data_Y9D
# 
_chem_comp.id                                    Y9D 
_chem_comp.name                                  "1-[7-[6-ethenyl-8-ethoxy-7-(5-methyl-1~{H}-indazol-4-yl)-2-(1-methylpiperidin-4-yl)oxy-quinazolin-4-yl]-2,7-diazaspiro[3.5]nonan-2-yl]propan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C36 H45 N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-28 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        623.788 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y9D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8X6R 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y9D C10 C1  C 0 1 Y N N N N N 70.807 -11.427 99.070  6.373   -2.243 1.457  C10 Y9D 1  
Y9D C9  C2  C 0 1 Y N N N N N 71.906 -11.913 98.390  6.973   -2.729 0.317  C9  Y9D 2  
Y9D C21 C3  C 0 1 Y N N N N N 68.378 -7.318  95.682  0.562   -1.812 0.466  C21 Y9D 3  
Y9D C6  C4  C 0 1 Y N N N N N 71.511 -10.691 95.073  4.489   -2.474 -2.257 C6  Y9D 4  
Y9D C22 C5  C 0 1 Y N N N N N 67.265 -7.808  95.037  0.280   -0.470 0.194  C22 Y9D 5  
Y9D C7  C6  C 0 1 Y N N N N N 71.047 -10.798 96.416  4.938   -2.311 -0.927 C7  Y9D 6  
Y9D C12 C7  C 0 1 Y N N N N N 69.957 -10.325 97.127  4.333   -1.821 0.251  C12 Y9D 7  
Y9D C19 C8  C 0 1 Y N N N N N 69.037 -9.485  96.409  2.934   -1.343 0.227  C19 Y9D 8  
Y9D C20 C9  C 0 1 Y N N N N N 69.264 -8.131  96.353  1.876   -2.248 0.485  C20 Y9D 9  
Y9D C11 C10 C 0 1 Y N N N N N 69.843 -10.638 98.472  5.062   -1.793 1.431  C11 Y9D 10 
Y9D C17 C11 C 0 1 Y N N N N N 67.034 -9.168  95.110  1.334   0.442  -0.061 C17 Y9D 11 
Y9D C8  C12 C 0 1 Y N N N N N 71.994 -11.579 97.059  6.267   -2.769 -0.883 C8  Y9D 12 
Y9D C18 C13 C 0 1 Y N N N N N 67.925 -9.994  95.785  2.665   -0.008 -0.039 C18 Y9D 13 
Y9D C32 C14 C 0 1 Y N N N N N 66.337 -7.005  94.364  -1.051  0.019  0.164  C32 Y9D 14 
Y9D C34 C15 C 0 1 Y N N N N N 65.110 -8.862  93.912  -0.224  2.123  -0.334 C34 Y9D 15 
Y9D C1  C16 C 0 1 N N N N N N 70.182 -6.547  97.871  1.187   -4.514 1.021  C1  Y9D 16 
Y9D C46 C17 C 0 1 N N N N N N 65.180 1.517   92.612  -9.954  -2.885 -1.399 C46 Y9D 17 
Y9D C2  C18 C 0 1 N N N N N N 70.411 -7.525  96.993  2.176   -3.663 0.777  C2  Y9D 18 
Y9D C45 C19 C 0 1 N N N N N N 66.611 1.333   93.022  -8.686  -3.063 -0.562 C45 Y9D 19 
Y9D C43 C20 C 0 1 N N N N N N 66.635 0.716   94.391  -7.968  -1.743 -0.450 C43 Y9D 20 
Y9D C40 C21 C 0 1 N N N N N N 61.973 -8.704  94.298  1.110   4.890  0.476  C40 Y9D 21 
Y9D C42 C22 C 0 1 N N N N N N 62.220 -9.938  92.051  0.224   5.399  -1.801 C42 Y9D 22 
Y9D C24 C23 C 0 1 N N N N N N 65.403 -3.465  94.444  -4.051  -1.992 -0.541 C24 Y9D 23 
Y9D C29 C24 C 0 1 N N N N N N 67.922 -3.486  94.877  -3.912  -1.459 1.944  C29 Y9D 24 
Y9D C39 C25 C 0 1 N N N N N N 61.118 -9.862  94.771  -0.009  5.753  1.064  C39 Y9D 25 
Y9D C37 C26 C 0 1 N N N N N N 61.192 -10.949 92.529  -0.869  6.247  -1.147 C37 Y9D 26 
Y9D C23 C27 C 0 1 N N N N N N 65.540 -4.700  93.585  -2.993  -0.907 -0.772 C23 Y9D 27 
Y9D C30 C28 C 0 1 N N N N N N 67.726 -4.972  94.708  -2.861  -0.399 1.597  C30 Y9D 28 
Y9D C25 C29 C 0 1 N N N N N N 66.765 -1.503  95.581  -5.995  -2.622 1.006  C25 Y9D 29 
Y9D C27 C30 C 0 1 N N N N N N 66.862 -1.698  93.434  -5.874  -0.566 0.558  C27 Y9D 30 
Y9D C41 C31 C 0 1 N N N N N N 62.856 -9.011  93.080  0.634   4.277  -0.844 C41 Y9D 31 
Y9D C28 C32 C 0 1 N N N N N N 66.695 -2.678  94.594  -4.823  -1.669 0.736  C28 Y9D 32 
Y9D C3  C33 C 0 1 N N N N N N 68.688 -10.152 99.300  4.424   -1.271 2.693  C3  Y9D 33 
Y9D C13 C34 C 0 1 N N N N N N 67.230 -13.263 94.542  5.365   2.463  0.380  C13 Y9D 34 
Y9D C36 C35 C 0 1 N N N N N N 59.381 -11.479 94.096  -1.338  7.743  0.698  C36 Y9D 35 
Y9D C14 C36 C 0 1 N N N N N N 67.975 -11.953 94.612  4.239   1.538  0.846  C14 Y9D 36 
Y9D N5  N1  N 0 1 Y N N N N N 72.660 -11.349 94.890  5.460   -2.976 -2.966 N5  Y9D 37 
Y9D N16 N2  N 0 1 Y N N N N N 65.953 -9.687  94.533  1.031   1.724  -0.319 N16 Y9D 38 
Y9D N33 N3  N 0 1 Y N N N N N 65.235 -7.526  93.804  -1.243  1.303  -0.101 N33 Y9D 39 
Y9D N4  N4  N 0 1 Y N N N N N 72.925 -11.872 96.099  6.582   -3.180 -2.154 N4  Y9D 40 
Y9D N31 N5  N 0 1 N N N N N N 66.497 -5.581  94.236  -2.118  -0.821 0.403  N31 Y9D 41 
Y9D N26 N6  N 0 1 N N N N N N 66.901 -0.628  94.422  -6.818  -1.659 0.248  N26 Y9D 42 
Y9D N38 N7  N 0 1 N N N N N N 60.350 -10.448 93.655  -0.365  6.812  0.112  N38 Y9D 43 
Y9D O44 O1  O 0 1 N N N N N N 66.468 1.408   95.395  -8.425  -0.756 -0.986 O44 Y9D 44 
Y9D O15 O2  O 0 1 N N N N N N 67.729 -11.360 95.888  3.683   0.859  -0.281 O15 Y9D 45 
Y9D O35 O3  O 0 1 N N N N N N 64.093 -9.650  93.410  -0.487  3.425  -0.599 O35 Y9D 46 
Y9D H1  H1  H 0 1 N N N N N N 70.696 -11.674 100.115 6.928   -2.216 2.383  H1  Y9D 47 
Y9D H2  H2  H 0 1 N N N N N N 72.654 -12.521 98.876  7.994   -3.080 0.353  H2  Y9D 48 
Y9D H3  H3  H 0 1 N N N N N N 68.564 -6.254  95.661  -0.242  -2.505 0.664  H3  Y9D 49 
Y9D H4  H4  H 0 1 N N N N N N 70.996 -10.144 94.297  3.508   -2.217 -2.626 H4  Y9D 50 
Y9D H5  H5  H 0 1 N N N N N N 69.169 -6.236  98.081  1.406   -5.550 1.234  H5  Y9D 51 
Y9D H6  H6  H 0 1 N N N N N N 71.009 -6.067  98.372  0.163   -4.171 1.005  H6  Y9D 52 
Y9D H7  H7  H 0 1 N N N N N N 65.140 1.969   91.610  -10.473 -3.839 -1.481 H7  Y9D 53 
Y9D H8  H8  H 0 1 N N N N N N 64.675 0.540   92.594  -10.607 -2.156 -0.919 H8  Y9D 54 
Y9D H9  H9  H 0 1 N N N N N N 64.674 2.177   93.332  -9.685  -2.531 -2.395 H9  Y9D 55 
Y9D H10 H10 H 0 1 N N N N N N 71.415 -7.852  96.768  3.200   -4.006 0.793  H10 Y9D 56 
Y9D H11 H11 H 0 1 N N N N N N 67.120 0.671   92.307  -8.955  -3.417 0.433  H11 Y9D 57 
Y9D H12 H12 H 0 1 N N N N N N 67.119 2.308   93.045  -8.033  -3.792 -1.042 H12 Y9D 58 
Y9D H13 H13 H 0 1 N N N N N N 62.628 -8.401  95.128  1.988   5.508  0.294  H13 Y9D 59 
Y9D H14 H14 H 0 1 N N N N N N 61.305 -7.871  94.035  1.363   4.095  1.177  H14 Y9D 60 
Y9D H15 H15 H 0 1 N N N N N N 63.035 -10.503 91.574  -0.156  4.968  -2.727 H15 Y9D 61 
Y9D H16 H16 H 0 1 N N N N N N 61.727 -9.302  91.301  1.089   6.026  -2.019 H16 Y9D 62 
Y9D H17 H17 H 0 1 N N N N N N 64.647 -2.808  93.989  -4.738  -2.017 -1.386 H17 Y9D 63 
Y9D H18 H18 H 0 1 N N N N N N 65.066 -3.774  95.445  -3.564  -2.962 -0.438 H18 Y9D 64 
Y9D H19 H19 H 0 1 N N N N N N 68.717 -3.161  94.190  -3.416  -2.397 2.194  H19 Y9D 65 
Y9D H20 H20 H 0 1 N N N N N N 68.232 -3.293  95.915  -4.504  -1.122 2.795  H20 Y9D 66 
Y9D H21 H21 H 0 1 N N N N N N 60.417 -9.501  95.538  -0.883  5.131  1.259  H21 Y9D 67 
Y9D H22 H22 H 0 1 N N N N N N 61.769 -10.636 95.204  0.331   6.202  1.997  H22 Y9D 68 
Y9D H23 H23 H 0 1 N N N N N N 60.533 -11.202 91.686  -1.153  7.056  -1.820 H23 Y9D 69 
Y9D H24 H24 H 0 1 N N N N N N 61.721 -11.853 92.864  -1.739  5.623  -0.942 H24 Y9D 70 
Y9D H25 H25 H 0 1 N N N N N N 65.904 -4.423  92.585  -2.399  -1.160 -1.650 H25 Y9D 71 
Y9D H26 H26 H 0 1 N N N N N N 64.567 -5.204  93.494  -3.485  0.052  -0.930 H26 Y9D 72 
Y9D H27 H27 H 0 1 N N N N N N 67.915 -5.412  95.698  -3.355  0.552  1.401  H27 Y9D 73 
Y9D H28 H28 H 0 1 N N N N N N 68.508 -5.298  94.007  -2.171  -0.285 2.434  H28 Y9D 74 
Y9D H29 H29 H 0 1 N N N N N N 67.637 -1.517  96.251  -5.893  -3.593 0.519  H29 Y9D 75 
Y9D H30 H30 H 0 1 N N N N N N 65.851 -1.344  96.172  -6.265  -2.701 2.059  H30 Y9D 76 
Y9D H31 H31 H 0 1 N N N N N N 66.006 -1.654  92.745  -6.110  -0.030 1.478  H31 Y9D 77 
Y9D H32 H32 H 0 1 N N N N N N 67.791 -1.824  92.858  -5.677  0.098  -0.284 H32 Y9D 78 
Y9D H33 H33 H 0 1 N N N N N N 63.072 -8.056  92.579  1.443   3.696  -1.288 H33 Y9D 79 
Y9D H34 H34 H 0 1 N N N N N N 67.869 -10.885 99.254  3.941   -2.093 3.223  H34 Y9D 80 
Y9D H35 H35 H 0 1 N N N N N N 69.012 -10.029 100.344 5.189   -0.828 3.330  H35 Y9D 81 
Y9D H36 H36 H 0 1 N N N N N N 68.338 -9.186  98.909  3.680   -0.516 2.439  H36 Y9D 82 
Y9D H37 H37 H 0 1 N N N N N N 67.408 -13.735 93.564  6.141   1.874  -0.108 H37 Y9D 83 
Y9D H38 H38 H 0 1 N N N N N N 67.586 -13.930 95.341  4.966   3.194  -0.324 H38 Y9D 84 
Y9D H39 H39 H 0 1 N N N N N N 66.153 -13.079 94.670  5.788   2.981  1.240  H39 Y9D 85 
Y9D H40 H40 H 0 1 N N N N N N 58.775 -11.083 94.925  -2.270  7.214  0.901  H40 Y9D 86 
Y9D H41 H41 H 0 1 N N N N N N 58.723 -11.746 93.256  -0.939  8.146  1.629  H41 Y9D 87 
Y9D H42 H42 H 0 1 N N N N N N 59.925 -12.373 94.434  -1.527  8.558  0.001  H42 Y9D 88 
Y9D H43 H43 H 0 1 N N N N N N 69.053 -12.132 94.488  4.637   0.807  1.550  H43 Y9D 89 
Y9D H44 H44 H 0 1 N N N N N N 67.621 -11.281 93.816  3.463   2.127  1.335  H44 Y9D 90 
Y9D H45 H45 H 0 1 N N N N N N 73.735 -12.429 96.282  7.433   -3.546 -2.440 H45 Y9D 91 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y9D C42 C37 SING N N 1  
Y9D C42 C41 SING N N 2  
Y9D C37 N38 SING N N 3  
Y9D C46 C45 SING N N 4  
Y9D C45 C43 SING N N 5  
Y9D C41 O35 SING N N 6  
Y9D C41 C40 SING N N 7  
Y9D O35 C34 SING N N 8  
Y9D C27 N26 SING N N 9  
Y9D C27 C28 SING N N 10 
Y9D C23 N31 SING N N 11 
Y9D C23 C24 SING N N 12 
Y9D N38 C36 SING N N 13 
Y9D N38 C39 SING N N 14 
Y9D N33 C34 DOUB Y N 15 
Y9D N33 C32 SING Y N 16 
Y9D C34 N16 SING Y N 17 
Y9D N31 C32 SING N N 18 
Y9D N31 C30 SING N N 19 
Y9D C40 C39 SING N N 20 
Y9D C32 C22 DOUB Y N 21 
Y9D C43 N26 SING N N 22 
Y9D C43 O44 DOUB N N 23 
Y9D N26 C25 SING N N 24 
Y9D C24 C28 SING N N 25 
Y9D N16 C17 DOUB Y N 26 
Y9D C13 C14 SING N N 27 
Y9D C28 C29 SING N N 28 
Y9D C28 C25 SING N N 29 
Y9D C14 O15 SING N N 30 
Y9D C30 C29 SING N N 31 
Y9D N5  C6  DOUB Y N 32 
Y9D N5  N4  SING Y N 33 
Y9D C22 C17 SING Y N 34 
Y9D C22 C21 SING Y N 35 
Y9D C6  C7  SING Y N 36 
Y9D C17 C18 SING Y N 37 
Y9D C21 C20 DOUB Y N 38 
Y9D C18 O15 SING N N 39 
Y9D C18 C19 DOUB Y N 40 
Y9D N4  C8  SING Y N 41 
Y9D C20 C19 SING Y N 42 
Y9D C20 C2  SING N N 43 
Y9D C19 C12 SING N N 44 
Y9D C7  C8  DOUB Y N 45 
Y9D C7  C12 SING Y N 46 
Y9D C2  C1  DOUB N N 47 
Y9D C8  C9  SING Y N 48 
Y9D C12 C11 DOUB Y N 49 
Y9D C9  C10 DOUB Y N 50 
Y9D C11 C10 SING Y N 51 
Y9D C11 C3  SING N N 52 
Y9D C10 H1  SING N N 53 
Y9D C9  H2  SING N N 54 
Y9D C21 H3  SING N N 55 
Y9D C6  H4  SING N N 56 
Y9D C1  H5  SING N N 57 
Y9D C1  H6  SING N N 58 
Y9D C46 H7  SING N N 59 
Y9D C46 H8  SING N N 60 
Y9D C46 H9  SING N N 61 
Y9D C2  H10 SING N N 62 
Y9D C45 H11 SING N N 63 
Y9D C45 H12 SING N N 64 
Y9D C40 H13 SING N N 65 
Y9D C40 H14 SING N N 66 
Y9D C42 H15 SING N N 67 
Y9D C42 H16 SING N N 68 
Y9D C24 H17 SING N N 69 
Y9D C24 H18 SING N N 70 
Y9D C29 H19 SING N N 71 
Y9D C29 H20 SING N N 72 
Y9D C39 H21 SING N N 73 
Y9D C39 H22 SING N N 74 
Y9D C37 H23 SING N N 75 
Y9D C37 H24 SING N N 76 
Y9D C23 H25 SING N N 77 
Y9D C23 H26 SING N N 78 
Y9D C30 H27 SING N N 79 
Y9D C30 H28 SING N N 80 
Y9D C25 H29 SING N N 81 
Y9D C25 H30 SING N N 82 
Y9D C27 H31 SING N N 83 
Y9D C27 H32 SING N N 84 
Y9D C41 H33 SING N N 85 
Y9D C3  H34 SING N N 86 
Y9D C3  H35 SING N N 87 
Y9D C3  H36 SING N N 88 
Y9D C13 H37 SING N N 89 
Y9D C13 H38 SING N N 90 
Y9D C13 H39 SING N N 91 
Y9D C36 H40 SING N N 92 
Y9D C36 H41 SING N N 93 
Y9D C36 H42 SING N N 94 
Y9D C14 H43 SING N N 95 
Y9D C14 H44 SING N N 96 
Y9D N4  H45 SING N N 97 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y9D InChI            InChI                1.06  "InChI=1S/C36H45N7O3/c1-6-24-19-26-32(33(45-8-3)31(24)30-23(4)9-10-28-27(30)20-37-40-28)38-35(46-25-11-15-41(5)16-12-25)39-34(26)42-17-13-36(14-18-42)21-43(22-36)29(44)7-2/h6,9-10,19-20,25H,1,7-8,11-18,21-22H2,2-5H3,(H,37,40)" 
Y9D InChIKey         InChI                1.06  CHJQNPXKYWVVNA-UHFFFAOYSA-N                                                                                                                                                                                                        
Y9D SMILES_CANONICAL CACTVS               3.385 "CCOc1c2nc(OC3CCN(C)CC3)nc(N4CCC5(CC4)CN(C5)C(=O)CC)c2cc(C=C)c1c6c(C)ccc7[nH]ncc67"                                                                                                                                                
Y9D SMILES           CACTVS               3.385 "CCOc1c2nc(OC3CCN(C)CC3)nc(N4CCC5(CC4)CN(C5)C(=O)CC)c2cc(C=C)c1c6c(C)ccc7[nH]ncc67"                                                                                                                                                
Y9D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC2(C1)CCN(CC2)c3c4cc(c(c(c4nc(n3)OC5CCN(CC5)C)OCC)c6c(ccc7c6cn[nH]7)C)C=C"                                                                                                                                              
Y9D SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC2(C1)CCN(CC2)c3c4cc(c(c(c4nc(n3)OC5CCN(CC5)C)OCC)c6c(ccc7c6cn[nH]7)C)C=C"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           Y9D 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[7-[6-ethenyl-8-ethoxy-7-(5-methyl-1~{H}-indazol-4-yl)-2-(1-methylpiperidin-4-yl)oxy-quinazolin-4-yl]-2,7-diazaspiro[3.5]nonan-2-yl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y9D "Create component" 2023-11-28 PDBJ 
Y9D "Initial release"  2024-01-17 RCSB 
# 
