data_Y6D
#

_chem_comp.id                                   Y6D
_chem_comp.name                                 "2-(benzotriazol-1-yl)-~{N}-(4-pyridin-3-ylphenyl)-~{N}-(thiophen-3-ylmethyl)ethanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H19 N5 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-08
_chem_comp.pdbx_modified_date                   2021-08-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       425.506
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y6D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LMH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y6D  C10  C1   C  0  1  Y  N  N  -19.601  -40.530   0.972  -5.105  -1.892   0.773  C10  Y6D   1  
Y6D  C14  C2   C  0  1  N  N  N  -25.284  -40.212   4.645  -0.440   1.885  -1.516  C14  Y6D   2  
Y6D  C21  C3   C  0  1  Y  N  N  -26.334  -41.975   2.288   1.200  -1.018   0.200  C21  Y6D   3  
Y6D  C22  C4   C  0  1  Y  N  N  -27.159  -42.991   1.784   2.463  -1.542   0.380  C22  Y6D   4  
Y6D  C30  C5   C  0  1  Y  N  N  -25.970  -44.610   3.172   3.406   0.340  -0.799  C30  Y6D   5  
Y6D  C31  C6   C  0  1  Y  N  N  -25.179  -43.605   3.707   2.142   0.863  -0.971  C31  Y6D   6  
Y6D  O01  O1   O  0  1  N  N  N  -22.657  -39.982   3.662  -1.135  -0.763   0.739  O01  Y6D   7  
Y6D  C02  C7   C  0  1  N  N  N  -23.229  -40.978   3.293  -1.306   0.136  -0.057  C02  Y6D   8  
Y6D  C03  C8   C  0  1  N  N  N  -22.589  -42.020   2.345  -2.701   0.612  -0.368  C03  Y6D   9  
Y6D  N04  N1   N  0  1  Y  N  N  -21.281  -41.522   1.985  -3.674  -0.261   0.294  N04  Y6D  10  
Y6D  C05  C9   C  0  1  Y  N  N  -20.986  -40.787   0.885  -4.242  -1.401  -0.222  C05  Y6D  11  
Y6D  C06  C10  C  0  1  Y  N  N  -21.767  -40.277  -0.159  -4.123  -2.076  -1.432  C06  Y6D  12  
Y6D  C07  C11  C  0  1  Y  N  N  -21.111  -39.548  -1.150  -4.852  -3.225  -1.646  C07  Y6D  13  
Y6D  C08  C12  C  0  1  Y  N  N  -19.729  -39.243  -1.067  -5.704  -3.711  -0.663  C08  Y6D  14  
Y6D  C09  C13  C  0  1  Y  N  N  -18.966  -39.738   0.019  -5.839  -3.060   0.529  C09  Y6D  15  
Y6D  N11  N2   N  0  1  Y  N  N  -19.156  -41.108   2.126  -5.030  -1.056   1.828  N11  Y6D  16  
Y6D  N12  N3   N  0  1  Y  N  N  -20.149  -41.705   2.695  -4.207  -0.098   1.582  N12  Y6D  17  
Y6D  N13  N4   N  0  1  N  N  N  -24.586  -41.148   3.756  -0.247   0.710  -0.663  N13  Y6D  18  
Y6D  C15  C14  C  0  1  Y  N  N  -25.161  -40.812   6.059  -0.384   3.133  -0.673  C15  Y6D  19  
Y6D  C16  C15  C  0  1  Y  N  N  -24.429  -42.010   6.531   0.764   3.727  -0.345  C16  Y6D  20  
Y6D  S17  S1   S  0  1  Y  N  N  -24.502  -42.255   8.193   0.435   5.146   0.640  S17  Y6D  21  
Y6D  C18  C16  C  0  1  Y  N  N  -25.404  -40.927   8.453  -1.296   4.845   0.548  C18  Y6D  22  
Y6D  C19  C17  C  0  1  Y  N  N  -25.726  -40.171   7.277  -1.521   3.753  -0.185  C19  Y6D  23  
Y6D  C20  C18  C  0  1  Y  N  N  -25.367  -42.290   3.254   1.035   0.184  -0.477  C20  Y6D  24  
Y6D  C23  C19  C  0  1  Y  N  N  -26.952  -44.289   2.221   3.574  -0.865  -0.119  C23  Y6D  25  
Y6D  C24  C20  C  0  1  Y  N  N  -27.839  -45.432   1.650   4.934  -1.426   0.073  C24  Y6D  26  
Y6D  C25  C21  C  0  1  Y  N  N  -28.287  -45.360   0.318   6.056  -0.753  -0.418  C25  Y6D  27  
Y6D  C26  C22  C  0  1  Y  N  N  -29.063  -46.416  -0.172   7.303  -1.318  -0.213  C26  Y6D  28  
Y6D  C27  C23  C  0  1  Y  N  N  -29.294  -47.481   0.661   7.397  -2.519   0.466  C27  Y6D  29  
Y6D  N28  N5   N  0  1  Y  N  N  -28.849  -47.533   1.901   6.320  -3.132   0.918  N28  Y6D  30  
Y6D  C29  C24  C  0  1  Y  N  N  -28.123  -46.549   2.410   5.114  -2.630   0.751  C29  Y6D  31  
Y6D  H1   H1   H  0  1  N  N  N  -24.810  -39.220   4.606   0.347   1.920  -2.270  H1   Y6D  32  
Y6D  H2   H2   H  0  1  N  N  N  -26.342  -40.124   4.356  -1.411   1.822  -2.008  H2   Y6D  33  
Y6D  H3   H3   H  0  1  N  N  N  -26.442  -40.960   1.936   0.338  -1.545   0.583  H3   Y6D  34  
Y6D  H4   H4   H  0  1  N  N  N  -27.938  -42.766   1.071   2.590  -2.476   0.907  H4   Y6D  35  
Y6D  H5   H5   H  0  1  N  N  N  -25.832  -45.634   3.485   4.266   0.868  -1.183  H5   Y6D  36  
Y6D  H6   H6   H  0  1  N  N  N  -24.434  -43.829   4.456   2.012   1.802  -1.490  H6   Y6D  37  
Y6D  H7   H7   H  0  1  N  N  N  -23.208  -42.140   1.444  -2.826   1.633  -0.009  H7   Y6D  38  
Y6D  H8   H8   H  0  1  N  N  N  -22.496  -42.989   2.857  -2.863   0.583  -1.446  H8   Y6D  39  
Y6D  H9   H9   H  0  1  N  N  N  -22.834  -40.442  -0.195  -3.462  -1.702  -2.200  H9   Y6D  40  
Y6D  H10  H10  H  0  1  N  N  N  -21.673  -39.205  -2.007  -4.758  -3.753  -2.583  H10  Y6D  41  
Y6D  H11  H11  H  0  1  N  N  N  -19.260  -38.636  -1.828  -6.270  -4.613  -0.845  H11  Y6D  42  
Y6D  H12  H12  H  0  1  N  N  N  -17.915  -39.506   0.106  -6.505  -3.448   1.285  H12  Y6D  43  
Y6D  H13  H13  H  0  1  N  N  N  -23.894  -42.670   5.864   1.747   3.387  -0.639  H13  Y6D  44  
Y6D  H14  H14  H  0  1  N  N  N  -25.736  -40.636   9.438  -2.059   5.453   1.011  H14  Y6D  45  
Y6D  H15  H15  H  0  1  N  N  N  -26.302  -39.258   7.276  -2.516   3.379  -0.380  H15  Y6D  46  
Y6D  H16  H16  H  0  1  N  N  N  -28.039  -44.515  -0.307   5.953   0.184  -0.945  H16  Y6D  47  
Y6D  H17  H17  H  0  1  N  N  N  -29.467  -46.393  -1.173   8.192  -0.826  -0.578  H17  Y6D  48  
Y6D  H18  H18  H  0  1  N  N  N  -29.867  -48.315   0.284   8.368  -2.963   0.628  H18  Y6D  49  
Y6D  H19  H19  H  0  1  N  N  N  -27.752  -46.621   3.422   4.256  -3.158   1.140  H19  Y6D  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y6D  C07  C08  DOUB  Y  N   1  
Y6D  C07  C06  SING  Y  N   2  
Y6D  C08  C09  SING  Y  N   3  
Y6D  C26  C25  DOUB  Y  N   4  
Y6D  C26  C27  SING  Y  N   5  
Y6D  C06  C05  DOUB  Y  N   6  
Y6D  C09  C10  DOUB  Y  N   7  
Y6D  C25  C24  SING  Y  N   8  
Y6D  C27  N28  DOUB  Y  N   9  
Y6D  C05  C10  SING  Y  N  10  
Y6D  C05  N04  SING  Y  N  11  
Y6D  C10  N11  SING  Y  N  12  
Y6D  C24  C23  SING  N  N  13  
Y6D  C24  C29  DOUB  Y  N  14  
Y6D  C22  C23  DOUB  Y  N  15  
Y6D  C22  C21  SING  Y  N  16  
Y6D  N28  C29  SING  Y  N  17  
Y6D  N04  C03  SING  N  N  18  
Y6D  N04  N12  SING  Y  N  19  
Y6D  N11  N12  DOUB  Y  N  20  
Y6D  C23  C30  SING  Y  N  21  
Y6D  C21  C20  DOUB  Y  N  22  
Y6D  C03  C02  SING  N  N  23  
Y6D  C30  C31  DOUB  Y  N  24  
Y6D  C20  C31  SING  Y  N  25  
Y6D  C20  N13  SING  N  N  26  
Y6D  C02  O01  DOUB  N  N  27  
Y6D  C02  N13  SING  N  N  28  
Y6D  N13  C14  SING  N  N  29  
Y6D  C14  C15  SING  N  N  30  
Y6D  C15  C16  DOUB  Y  N  31  
Y6D  C15  C19  SING  Y  N  32  
Y6D  C16  S17  SING  Y  N  33  
Y6D  C19  C18  DOUB  Y  N  34  
Y6D  S17  C18  SING  Y  N  35  
Y6D  C14  H1   SING  N  N  36  
Y6D  C14  H2   SING  N  N  37  
Y6D  C21  H3   SING  N  N  38  
Y6D  C22  H4   SING  N  N  39  
Y6D  C30  H5   SING  N  N  40  
Y6D  C31  H6   SING  N  N  41  
Y6D  C03  H7   SING  N  N  42  
Y6D  C03  H8   SING  N  N  43  
Y6D  C06  H9   SING  N  N  44  
Y6D  C07  H10  SING  N  N  45  
Y6D  C08  H11  SING  N  N  46  
Y6D  C09  H12  SING  N  N  47  
Y6D  C16  H13  SING  N  N  48  
Y6D  C18  H14  SING  N  N  49  
Y6D  C19  H15  SING  N  N  50  
Y6D  C25  H16  SING  N  N  51  
Y6D  C26  H17  SING  N  N  52  
Y6D  C27  H18  SING  N  N  53  
Y6D  C29  H19  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y6D  InChI             InChI                 1.03   "InChI=1S/C24H19N5OS/c30-24(16-29-23-6-2-1-5-22(23)26-27-29)28(15-18-11-13-31-17-18)21-9-7-19(8-10-21)20-4-3-12-25-14-20/h1-14,17H,15-16H2"  
Y6D  InChIKey          InChI                 1.03   LHBIUOYHJIXRST-UHFFFAOYSA-N  
Y6D  SMILES_CANONICAL  CACTVS                3.385  "O=C(Cn1nnc2ccccc12)N(Cc3cscc3)c4ccc(cc4)c5cccnc5"  
Y6D  SMILES            CACTVS                3.385  "O=C(Cn1nnc2ccccc12)N(Cc3cscc3)c4ccc(cc4)c5cccnc5"  
Y6D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)nnn2CC(=O)N(Cc3ccsc3)c4ccc(cc4)c5cccnc5"  
Y6D  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)nnn2CC(=O)N(Cc3ccsc3)c4ccc(cc4)c5cccnc5"  
#
_pdbx_chem_comp_identifier.comp_id          Y6D
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-(benzotriazol-1-yl)-~{N}-(4-pyridin-3-ylphenyl)-~{N}-(thiophen-3-ylmethyl)ethanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y6D  "Create component"  2021-02-08  RCSB  
Y6D  "Initial release"   2021-08-11  RCSB  
##
