data_Y5D
#

_chem_comp.id                                   Y5D
_chem_comp.name                                 "{1-(ethylsulfonyl)-3-[4-(2-{[3-fluoro-4-(1-methylpiperidin-4-yl)phenyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-1H-pyrazol-1-yl]azetidin-3-yl}acetonitrile"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H32 F N9 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-04
_chem_comp.pdbx_modified_date                   2022-01-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       577.676
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y5D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LL4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y5D  C10   C1   C  0  1  Y  N  N  11.713  -16.514  5.496  -3.076  -0.769   0.809  C10   Y5D   1  
Y5D  C13   C2   C  0  1  Y  N  N  10.434  -19.415  5.833  -0.088  -2.399  -0.713  C13   Y5D   2  
Y5D  C15   C3   C  0  1  Y  N  N  11.752  -21.226  6.043   0.688  -4.289  -1.663  C15   Y5D   3  
Y5D  C17   C4   C  0  1  Y  N  N   9.677  -20.548  6.154   1.320  -2.364  -0.699  C17   Y5D   4  
Y5D  C21   C5   C  0  1  Y  N  N   5.425  -18.162  6.122   3.288   0.860   0.771  C21   Y5D   5  
Y5D  C22   C6   C  0  1  Y  N  N   4.082  -18.444  6.386   3.940   0.339  -0.340  C22   Y5D   6  
Y5D  C24   C7   C  0  1  Y  N  N   3.507  -16.152  5.924   6.047   1.005   0.583  C24   Y5D   7  
Y5D  C26   C8   C  0  1  N  N  N   1.967  -14.853  7.116   7.935   1.882  -0.768  C26   Y5D   8  
Y5D  C04   C9   C  0  1  N  N  N  14.130  -14.862  4.682  -5.622   0.955   1.448  C04   Y5D   9  
Y5D  C05   C10  C  0  1  N  N  N  12.927  -14.344  5.365  -5.541  -0.562   1.197  C05   Y5D  10  
Y5D  C06   C11  C  0  1  N  N  N  13.133  -13.902  6.820  -5.770  -1.407   2.451  C06   Y5D  11  
Y5D  C07   C12  C  0  1  N  N  N  13.315  -15.088  7.762  -5.631  -2.833   2.114  C07   Y5D  12  
Y5D  C11   C13  C  0  1  Y  N  N  10.385  -16.857  5.380  -2.277  -1.302  -0.164  C11   Y5D  13  
Y5D  C12   C14  C  0  1  Y  N  N   9.728  -18.211  5.638  -0.797  -1.313  -0.173  C12   Y5D  14  
Y5D  C14   C15  C  0  1  Y  N  N  11.778  -19.862  5.737  -0.458  -3.663  -1.347  C14   Y5D  15  
Y5D  C19   C16  C  0  1  Y  N  N   7.764  -19.279  6.142   1.221  -0.300   0.326  C19   Y5D  16  
Y5D  C23   C17  C  0  1  Y  N  N   3.108  -17.442  6.275   5.316   0.414  -0.431  C23   Y5D  17  
Y5D  C25   C18  C  0  1  N  N  N   2.578  -14.922  5.803   7.548   1.084   0.481  C25   Y5D  18  
Y5D  C27   C19  C  0  1  N  N  N   1.010  -13.656  7.227   9.459   1.907  -0.900  C27   Y5D  19  
Y5D  C29   C20  C  0  1  N  N  N   0.330  -11.877  6.167   9.448  -0.135  -2.201  C29   Y5D  20  
Y5D  C30   C21  C  0  1  N  N  N   0.818  -13.543  4.833   9.648  -0.239   0.210  C30   Y5D  21  
Y5D  C31   C22  C  0  1  N  N  N   1.643  -14.832  4.713   8.129  -0.328   0.375  C31   Y5D  22  
Y5D  C32   C23  C  0  1  Y  N  N   4.847  -15.907  5.665   5.400   1.531   1.690  C32   Y5D  23  
Y5D  C34   C24  C  0  1  Y  N  N   5.810  -16.890  5.759   4.023   1.459   1.786  C34   Y5D  24  
Y5D  C36   C25  C  0  1  Y  N  N   9.645  -15.697  5.202  -3.121  -1.841  -1.157  C36   Y5D  25  
Y5D  C38   C26  C  0  1  N  N  N  12.876  -13.167  4.500  -6.801  -0.384   0.330  C38   Y5D  26  
Y5D  C39   C27  C  0  1  N  N  N  15.682  -11.956  2.275  -8.150   3.045  -0.371  C39   Y5D  27  
Y5D  C40   C28  C  0  1  N  N  N  14.935  -10.783  2.914  -8.507   4.171  -1.343  C40   Y5D  28  
Y5D  F33   F1   F  0  1  N  N  N   5.275  -14.650  5.336   6.116   2.114   2.676  F33   Y5D  29  
Y5D  N03   N1   N  0  1  N  N  N  14.147  -13.609  3.906  -6.380   1.023   0.184  N03   Y5D  30  
Y5D  N08   N2   N  0  1  N  N  N  13.430  -16.010  8.440  -5.524  -3.934   1.853  N08   Y5D  31  
Y5D  N09   N3   N  0  1  Y  N  N  11.769  -15.197  5.279  -4.355  -0.972   0.440  N09   Y5D  32  
Y5D  N16   N4   N  0  1  Y  N  N  10.500  -21.600  6.287   1.758  -3.524  -1.276  N16   Y5D  33  
Y5D  N18   N5   N  0  1  Y  N  N   8.328  -20.454  6.331   1.926  -1.302  -0.173  N18   Y5D  34  
Y5D  N20   N6   N  0  1  N  N  N   6.349  -19.268  6.281   1.895   0.786   0.864  N20   Y5D  35  
Y5D  N28   N7   N  0  1  N  N  N   1.087  -12.821  6.052   9.966   0.532  -0.999  N28   Y5D  36  
Y5D  N35   N8   N  0  1  Y  N  N   8.422  -18.180  5.812  -0.105  -0.293   0.332  N35   Y5D  37  
Y5D  N37   N9   N  0  1  Y  N  N  10.511  -14.673  5.114  -4.358  -1.637  -0.791  N37   Y5D  38  
Y5D  O01   O1   O  0  1  N  N  N  15.219  -14.598  1.793  -6.908   1.488  -2.146  O01   Y5D  39  
Y5D  O41   O2   O  0  1  N  N  N  13.380  -13.171  1.584  -5.522   3.061  -0.832  O41   Y5D  40  
Y5D  S02   S1   S  0  1  N  N  N  14.600  -13.407  2.310  -6.650   2.204  -0.945  S02   Y5D  41  
Y5D  H101  H1   H  0  0  N  N  N  12.539  -17.174  5.717  -2.742  -0.279   1.711  H101  Y5D  42  
Y5D  H151  H2   H  0  0  N  N  N  12.615  -21.875  6.076   0.755  -5.254  -2.144  H151  Y5D  43  
Y5D  H221  H3   H  0  0  N  N  N   3.792  -19.443  6.678   3.371  -0.124  -1.132  H221  Y5D  44  
Y5D  H261  H4   H  0  0  N  N  N   1.403  -15.780  7.298   7.501   1.410  -1.650  H261  Y5D  45  
Y5D  H262  H5   H  0  0  N  N  N   2.758  -14.750  7.874   7.560   2.902  -0.680  H262  Y5D  46  
Y5D  H042  H6   H  0  0  N  N  N  13.963  -15.770  4.084  -6.208   1.224   2.327  H042  Y5D  47  
Y5D  H041  H7   H  0  0  N  N  N  15.002  -15.009  5.336  -4.656   1.459   1.411  H041  Y5D  48  
Y5D  H061  H8   H  0  0  N  N  N  14.029  -13.266  6.874  -5.034  -1.140   3.209  H061  Y5D  49  
Y5D  H062  H9   H  0  0  N  N  N  12.254  -13.325  7.143  -6.773  -1.221   2.837  H062  Y5D  50  
Y5D  H141  H10  H  0  0  N  N  N  12.644  -19.270  5.480  -1.459  -4.024  -1.525  H141  Y5D  51  
Y5D  H231  H11  H  0  0  N  N  N   2.067  -17.665  6.458   5.823   0.009  -1.294  H231  Y5D  52  
Y5D  H251  H12  H  0  0  N  N  N   3.247  -14.053  5.720   7.948   1.578   1.366  H251  Y5D  53  
Y5D  H272  H13  H  0  0  N  N  N   1.281  -13.059  8.111   9.737   2.461  -1.796  H272  Y5D  54  
Y5D  H271  H14  H  0  0  N  N  N  -0.019  -14.028  7.337   9.891   2.391  -0.024  H271  Y5D  55  
Y5D  H291  H15  H  0  0  N  N  N   0.551  -11.341  7.101   8.365  -0.233  -2.123  H291  Y5D  56  
Y5D  H293  H16  H  0  0  N  N  N   0.461  -11.196  5.313   9.697   0.457  -3.081  H293  Y5D  57  
Y5D  H292  H17  H  0  0  N  N  N  -0.708  -12.240  6.190   9.896  -1.125  -2.289  H292  Y5D  58  
Y5D  H302  H18  H  0  0  N  N  N   1.056  -12.892  3.979  10.079   0.255   1.080  H302  Y5D  59  
Y5D  H301  H19  H  0  0  N  N  N  -0.250  -13.805  4.808  10.062  -1.243   0.120  H301  Y5D  60  
Y5D  H312  H20  H  0  0  N  N  N   0.968  -15.700  4.740   7.893  -0.887   1.280  H312  Y5D  61  
Y5D  H311  H21  H  0  0  N  N  N   2.194  -14.825  3.761   7.698  -0.835  -0.489  H311  Y5D  62  
Y5D  H341  H22  H  0  0  N  N  N   6.846  -16.667  5.552   3.518   1.870   2.648  H341  Y5D  63  
Y5D  H361  H23  H  0  0  N  N  N   8.569  -15.629  5.145  -2.800  -2.336  -2.062  H361  Y5D  64  
Y5D  H382  H24  H  0  0  N  N  N  12.931  -12.206  5.033  -6.777  -0.949  -0.601  H382  Y5D  65  
Y5D  H381  H25  H  0  0  N  N  N  12.027  -13.151  3.801  -7.734  -0.511   0.880  H381  Y5D  66  
Y5D  H392  H26  H  0  0  N  N  N  16.602  -12.164  2.842  -7.976   3.463   0.621  H392  Y5D  67  
Y5D  H391  H27  H  0  0  N  N  N  15.940  -11.710  1.234  -8.972   2.331  -0.325  H391  Y5D  68  
Y5D  H402  H28  H  0  0  N  N  N  15.576   -9.889  2.903  -7.685   4.886  -1.389  H402  Y5D  69  
Y5D  H403  H29  H  0  0  N  N  N  14.015  -10.581  2.346  -8.682   3.754  -2.335  H403  Y5D  70  
Y5D  H401  H30  H  0  0  N  N  N  14.676  -11.035  3.953  -9.409   4.677  -0.998  H401  Y5D  71  
Y5D  H161  H31  H  0  0  N  N  N  10.214  -22.526  6.533   2.690  -3.767  -1.399  H161  Y5D  72  
Y5D  H201  H32  H  0  0  N  N  N   5.933  -20.145  6.522   1.401   1.494   1.304  H201  Y5D  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y5D  O41  S02   DOUB  N  N   1  
Y5D  O01  S02   DOUB  N  N   2  
Y5D  C39  S02   SING  N  N   3  
Y5D  C39  C40   SING  N  N   4  
Y5D  S02  N03   SING  N  N   5  
Y5D  N03  C38   SING  N  N   6  
Y5D  N03  C04   SING  N  N   7  
Y5D  C38  C05   SING  N  N   8  
Y5D  C04  C05   SING  N  N   9  
Y5D  C31  C30   SING  N  N  10  
Y5D  C31  C25   SING  N  N  11  
Y5D  C30  N28   SING  N  N  12  
Y5D  N37  C36   DOUB  Y  N  13  
Y5D  N37  N09   SING  Y  N  14  
Y5D  C36  C11   SING  Y  N  15  
Y5D  N09  C05   SING  N  N  16  
Y5D  N09  C10   SING  Y  N  17  
Y5D  F33  C32   SING  N  N  18  
Y5D  C05  C06   SING  N  N  19  
Y5D  C11  C10   DOUB  Y  N  20  
Y5D  C11  C12   SING  N  N  21  
Y5D  C12  N35   DOUB  Y  N  22  
Y5D  C12  C13   SING  Y  N  23  
Y5D  C32  C34   DOUB  Y  N  24  
Y5D  C32  C24   SING  Y  N  25  
Y5D  C14  C13   SING  Y  N  26  
Y5D  C14  C15   DOUB  Y  N  27  
Y5D  C34  C21   SING  Y  N  28  
Y5D  C25  C24   SING  N  N  29  
Y5D  C25  C26   SING  N  N  30  
Y5D  N35  C19   SING  Y  N  31  
Y5D  C13  C17   DOUB  Y  N  32  
Y5D  C24  C23   DOUB  Y  N  33  
Y5D  C15  N16   SING  Y  N  34  
Y5D  N28  C29   SING  N  N  35  
Y5D  N28  C27   SING  N  N  36  
Y5D  C21  N20   SING  N  N  37  
Y5D  C21  C22   DOUB  Y  N  38  
Y5D  C19  N20   SING  N  N  39  
Y5D  C19  N18   DOUB  Y  N  40  
Y5D  C17  N16   SING  Y  N  41  
Y5D  C17  N18   SING  Y  N  42  
Y5D  C23  C22   SING  Y  N  43  
Y5D  C06  C07   SING  N  N  44  
Y5D  C26  C27   SING  N  N  45  
Y5D  C07  N08   TRIP  N  N  46  
Y5D  C10  H101  SING  N  N  47  
Y5D  C15  H151  SING  N  N  48  
Y5D  C22  H221  SING  N  N  49  
Y5D  C26  H261  SING  N  N  50  
Y5D  C26  H262  SING  N  N  51  
Y5D  C04  H042  SING  N  N  52  
Y5D  C04  H041  SING  N  N  53  
Y5D  C06  H061  SING  N  N  54  
Y5D  C06  H062  SING  N  N  55  
Y5D  C14  H141  SING  N  N  56  
Y5D  C23  H231  SING  N  N  57  
Y5D  C25  H251  SING  N  N  58  
Y5D  C27  H272  SING  N  N  59  
Y5D  C27  H271  SING  N  N  60  
Y5D  C29  H291  SING  N  N  61  
Y5D  C29  H293  SING  N  N  62  
Y5D  C29  H292  SING  N  N  63  
Y5D  C30  H302  SING  N  N  64  
Y5D  C30  H301  SING  N  N  65  
Y5D  C31  H312  SING  N  N  66  
Y5D  C31  H311  SING  N  N  67  
Y5D  C34  H341  SING  N  N  68  
Y5D  C36  H361  SING  N  N  69  
Y5D  C38  H382  SING  N  N  70  
Y5D  C38  H381  SING  N  N  71  
Y5D  C39  H392  SING  N  N  72  
Y5D  C39  H391  SING  N  N  73  
Y5D  C40  H402  SING  N  N  74  
Y5D  C40  H403  SING  N  N  75  
Y5D  C40  H401  SING  N  N  76  
Y5D  N16  H161  SING  N  N  77  
Y5D  N20  H201  SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y5D  SMILES            ACDLabs               12.01  "c5c(c4c1c(ncc1)nc(Nc3ccc(C2CCN(C)CC2)c(c3)F)n4)cnn5C6(CN(C6)S(CC)(=O)=O)CC#N"  
Y5D  InChI             InChI                 1.03   "InChI=1S/C28H32FN9O2S/c1-3-41(39,40)37-17-28(18-37,9-10-30)38-16-20(15-32-38)25-23-6-11-31-26(23)35-27(34-25)33-21-4-5-22(24(29)14-21)19-7-12-36(2)13-8-19/h4-6,11,14-16,19H,3,7-9,12-13,17-18H2,1-2H3,(H2,31,33,34,35)"  
Y5D  InChIKey          InChI                 1.03   KODVAIZRONHLFN-UHFFFAOYSA-N  
Y5D  SMILES_CANONICAL  CACTVS                3.385  "CC[S](=O)(=O)N1CC(CC#N)(C1)n2cc(cn2)c3nc(Nc4ccc(C5CCN(C)CC5)c(F)c4)nc6[nH]ccc36"  
Y5D  SMILES            CACTVS                3.385  "CC[S](=O)(=O)N1CC(CC#N)(C1)n2cc(cn2)c3nc(Nc4ccc(C5CCN(C)CC5)c(F)c4)nc6[nH]ccc36"  
Y5D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCS(=O)(=O)N1CC(C1)(CC#N)n2cc(cn2)c3c4cc[nH]c4nc(n3)Nc5ccc(c(c5)F)C6CCN(CC6)C"  
Y5D  SMILES            "OpenEye OEToolkits"  2.0.7  "CCS(=O)(=O)N1CC(C1)(CC#N)n2cc(cn2)c3c4cc[nH]c4nc(n3)Nc5ccc(c(c5)F)C6CCN(CC6)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y5D  "SYSTEMATIC NAME"  ACDLabs               12.01  "{1-(ethylsulfonyl)-3-[4-(2-{[3-fluoro-4-(1-methylpiperidin-4-yl)phenyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-1H-pyrazol-1-yl]azetidin-3-yl}acetonitrile"  
Y5D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[1-ethylsulfonyl-3-[4-[2-[[3-fluoranyl-4-(1-methylpiperidin-4-yl)phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]pyrazol-1-yl]azetidin-3-yl]ethanenitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y5D  "Create component"  2021-02-04  RCSB  
Y5D  "Initial release"   2022-01-12  RCSB  
##
