data_Y0D
#

_chem_comp.id                                   Y0D
_chem_comp.name                                 "N-(cyclopropylmethyl)-4-(thiophene-2-carbonyl)piperazine-1-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H19 N3 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-25
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       293.385
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y0D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5S9C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y0D  N1   N1   N  0  1  N  N  N  -16.022  17.217  25.975  -3.370  -0.042   0.036  N1   Y0D   1  
Y0D  N3   N2   N  0  1  N  N  N  -19.144  13.266  25.580   1.288   0.864   0.336  N3   Y0D   2  
Y0D  C4   C1   C  0  1  N  N  N  -13.827  20.263  25.378  -7.193   0.174   0.535  C4   Y0D   3  
Y0D  C5   C2   C  0  1  N  N  N  -14.391  19.540  24.202  -6.784   0.513  -0.899  C5   Y0D   4  
Y0D  C6   C3   C  0  1  N  N  N  -18.276  14.668  27.360   0.113  -1.212  -0.173  C6   Y0D   5  
Y0D  C7   C4   C  0  1  N  N  N  -18.508  13.246  26.897   1.127  -0.535   0.757  C7   Y0D   6  
Y0D  C8   C5   C  0  1  N  N  N  -20.234  12.606  25.188   2.508   1.356   0.042  C8   Y0D   7  
Y0D  C10  C6   C  0  1  Y  N  N  -21.695  13.186  27.230   4.940   0.819   0.414  C10  Y0D   8  
Y0D  C13  C7   C  0  1  N  N  N  -18.526  14.164  24.602   0.094   1.716   0.235  C13  Y0D   9  
Y0D  C1   C8   C  0  1  N  N  N  -16.640  16.442  26.875  -2.297  -0.858   0.026  C1   Y0D  10  
Y0D  C11  C9   C  0  1  Y  N  N  -23.070  13.038  27.553   5.844  -0.211   0.312  C11  Y0D  11  
Y0D  C12  C10  C  0  1  Y  N  N  -23.709  12.159  26.760   5.339  -1.366  -0.138  C12  Y0D  12  
Y0D  C14  C11  C  0  1  N  N  N  -17.246  14.756  25.139  -0.917   1.033  -0.694  C14  Y0D  13  
Y0D  C2   C12  C  0  1  N  N  N  -15.497  18.535  26.307  -4.710  -0.597   0.245  C2   Y0D  14  
Y0D  C3   C13  C  0  1  N  N  N  -14.265  18.846  25.512  -5.740   0.534   0.219  C3   Y0D  15  
Y0D  C9   C14  C  0  1  Y  N  N  -21.388  12.538  26.038   3.674   0.468   0.038  C9   Y0D  16  
Y0D  N2   N3   N  0  1  N  N  N  -17.461  15.438  26.413  -1.078  -0.364  -0.268  N2   Y0D  17  
Y0D  O1   O1   O  0  1  N  N  N  -16.526  16.647  28.080  -2.429  -2.039   0.282  O1   Y0D  18  
Y0D  O2   O2   O  0  1  N  N  N  -20.304  12.161  24.054   2.642   2.537  -0.219  O2   Y0D  19  
Y0D  S1   S1   S  0  1  Y  N  N  -22.716  11.570  25.520   3.671  -1.218  -0.463  S1   Y0D  20  
Y0D  H1   H1   H  0  1  N  N  N  -15.917  16.879  25.040  -3.255   0.912  -0.090  H1   Y0D  21  
Y0D  H5   H2   H  0  1  N  N  N  -14.405  21.066  25.860  -7.787   0.910   1.077  H5   Y0D  22  
Y0D  H6   H3   H  0  1  N  N  N  -12.756  20.513  25.408  -7.415  -0.869   0.763  H6   Y0D  23  
Y0D  H7   H4   H  0  1  N  N  N  -15.385  19.809  23.816  -6.737  -0.307  -1.616  H7   Y0D  24  
Y0D  H8   H5   H  0  1  N  N  N  -13.736  19.257  23.364  -7.110   1.472  -1.303  H8   Y0D  25  
Y0D  H10  H6   H  0  1  N  N  N  -17.761  14.644  28.331   0.552  -1.339  -1.163  H10  Y0D  26  
Y0D  H9   H7   H  0  1  N  N  N  -19.250  15.166  27.474  -0.162  -2.186   0.233  H9   Y0D  27  
Y0D  H12  H8   H  0  1  N  N  N  -17.545  12.719  26.832   2.085  -1.050   0.691  H12  Y0D  28  
Y0D  H11  H9   H  0  1  N  N  N  -19.162  12.728  27.614   0.761  -0.568   1.783  H11  Y0D  29  
Y0D  H13  H10  H  0  1  N  N  N  -20.981  13.730  27.831   5.203   1.807   0.762  H13  Y0D  30  
Y0D  H17  H11  H  0  1  N  N  N  -18.303  13.598  23.686  -0.346   1.846   1.223  H17  Y0D  31  
Y0D  H16  H12  H  0  1  N  N  N  -19.228  14.978  24.368   0.371   2.686  -0.176  H16  Y0D  32  
Y0D  H14  H13  H  0  1  N  N  N  -23.554  13.577  28.354   6.885  -0.097   0.575  H14  Y0D  33  
Y0D  H15  H14  H  0  1  N  N  N  -24.738  11.862  26.898   5.912  -2.272  -0.277  H15  Y0D  34  
Y0D  H19  H15  H  0  1  N  N  N  -16.513  13.949  25.286  -1.876   1.547  -0.631  H19  Y0D  35  
Y0D  H18  H16  H  0  1  N  N  N  -16.853  15.479  24.409  -0.551   1.065  -1.720  H18  Y0D  36  
Y0D  H3   H17  H  0  1  N  N  N  -16.265  19.292  26.089  -4.935  -1.312  -0.547  H3   Y0D  37  
Y0D  H2   H18  H  0  1  N  N  N  -15.249  18.562  27.378  -4.748  -1.101   1.211  H2   Y0D  38  
Y0D  H4   H19  H  0  1  N  N  N  -13.457  18.103  25.582  -5.378   1.507   0.552  H4   Y0D  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y0D  O1   C1   DOUB  N  N   1  
Y0D  C1   N1   SING  N  N   2  
Y0D  N1   C2   SING  N  N   3  
Y0D  C2   C3   SING  N  N   4  
Y0D  C3   C4   SING  N  N   5  
Y0D  C4   C5   SING  N  N   6  
Y0D  C1   N2   SING  N  N   7  
Y0D  N2   C6   SING  N  N   8  
Y0D  C6   C7   SING  N  N   9  
Y0D  C7   N3   SING  N  N  10  
Y0D  N3   C8   SING  N  N  11  
Y0D  C8   O2   DOUB  N  N  12  
Y0D  C8   C9   SING  N  N  13  
Y0D  C9   C10  DOUB  Y  N  14  
Y0D  C10  C11  SING  Y  N  15  
Y0D  C11  C12  DOUB  Y  N  16  
Y0D  C12  S1   SING  Y  N  17  
Y0D  N3   C13  SING  N  N  18  
Y0D  C13  C14  SING  N  N  19  
Y0D  C3   C5   SING  N  N  20  
Y0D  N2   C14  SING  N  N  21  
Y0D  C9   S1   SING  Y  N  22  
Y0D  N1   H1   SING  N  N  23  
Y0D  C4   H5   SING  N  N  24  
Y0D  C4   H6   SING  N  N  25  
Y0D  C5   H7   SING  N  N  26  
Y0D  C5   H8   SING  N  N  27  
Y0D  C6   H10  SING  N  N  28  
Y0D  C6   H9   SING  N  N  29  
Y0D  C7   H12  SING  N  N  30  
Y0D  C7   H11  SING  N  N  31  
Y0D  C10  H13  SING  N  N  32  
Y0D  C13  H17  SING  N  N  33  
Y0D  C13  H16  SING  N  N  34  
Y0D  C11  H14  SING  N  N  35  
Y0D  C12  H15  SING  N  N  36  
Y0D  C14  H19  SING  N  N  37  
Y0D  C14  H18  SING  N  N  38  
Y0D  C2   H3   SING  N  N  39  
Y0D  C2   H2   SING  N  N  40  
Y0D  C3   H4   SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y0D  SMILES            ACDLabs               12.01  "N(CC1CC1)C(N3CCN(C(=O)c2cccs2)CC3)=O"  
Y0D  InChI             InChI                 1.03   "InChI=1S/C14H19N3O2S/c18-13(12-2-1-9-20-12)16-5-7-17(8-6-16)14(19)15-10-11-3-4-11/h1-2,9,11H,3-8,10H2,(H,15,19)"  
Y0D  InChIKey          InChI                 1.03   JVDHYYWAYKTYDN-UHFFFAOYSA-N  
Y0D  SMILES_CANONICAL  CACTVS                3.385  "O=C(NCC1CC1)N2CCN(CC2)C(=O)c3sccc3"  
Y0D  SMILES            CACTVS                3.385  "O=C(NCC1CC1)N2CCN(CC2)C(=O)c3sccc3"  
Y0D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(sc1)C(=O)N2CCN(CC2)C(=O)NCC3CC3"  
Y0D  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(sc1)C(=O)N2CCN(CC2)C(=O)NCC3CC3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y0D  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(cyclopropylmethyl)-4-(thiophene-2-carbonyl)piperazine-1-carboxamide"  
Y0D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-(cyclopropylmethyl)-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y0D  "Create component"  2021-01-25  RCSB  
Y0D  "Initial release"   2021-02-17  RCSB  
##
