data_XQD
#

_chem_comp.id                                   XQD
_chem_comp.name                                 "[(2~{R},3~{R},4~{S},5~{S},6~{R})-3-acetamido-5-[[(1~{S})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-1-oxidanyl-ethyl]amino]-6-methyl-4-oxidanyl-oxan-2-yl] [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C40 H66 N11 O32 P5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-31
_chem_comp.pdbx_modified_date                   2021-02-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       1399.940
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XQD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L82
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XQD  N1     N1   N  0  1  N  N  N  -17.224  -23.230  19.774  -17.612   2.442  -1.647  N1     XQD    1  
XQD  N3     N2   N  0  1  N  N  N  -19.434  -23.714  20.545  -17.911   4.382  -2.924  N3     XQD    2  
XQD  C4     C1   C  0  1  N  N  N  -19.895  -23.308  19.337  -17.655   3.696  -4.057  C4     XQD    3  
XQD  C5     C2   C  0  1  N  N  N  -19.075  -22.861  18.312  -17.359   2.314  -3.981  C5     XQD    4  
XQD  C6     C3   C  0  1  N  N  N  -17.731  -22.810  18.539  -17.342   1.711  -2.773  C6     XQD    5  
XQD  O5P    O1   O  0  1  N  N  N   -6.812   -9.496  11.211   -0.284   0.609  -1.755  O5P    XQD    6  
XQD  C5P    C4   C  0  1  N  N  N   -6.596  -10.682  10.971   -0.413   0.115  -0.655  C5P    XQD    7  
XQD  C6P    C5   C  0  1  N  N  N   -6.709  -11.209   9.516    0.579  -0.910  -0.168  C6P    XQD    8  
XQD  C7P    C6   C  0  1  N  N  N   -7.935  -10.440   8.949    1.640  -1.145  -1.245  C7P    XQD    9  
XQD  N8P    N3   N  0  1  N  N  N   -8.210  -11.061   7.630    2.604  -2.141  -0.772  N8P    XQD   10  
XQD  C9P    C7   C  0  1  N  N  N   -7.854  -10.554   6.449    3.635  -2.509  -1.559  C9P    XQD   11  
XQD  O9P    O2   O  0  1  N  N  N   -7.236   -9.453   6.267    3.712  -2.086  -2.693  O9P    XQD   12  
XQD  CAP    C8   C  0  1  N  N  R   -8.182  -11.461   5.256    4.691  -3.444  -1.030  CAP    XQD   13  
XQD  OAP    O3   O  0  1  N  N  N   -6.930  -11.570   4.551    4.277  -3.962   0.236  OAP    XQD   14  
XQD  CBP    C9   C  0  1  N  N  N   -9.322  -10.944   4.353    6.009  -2.685  -0.864  CBP    XQD   15  
XQD  CDP    C10  C  0  1  N  N  N  -10.624  -11.085   5.154    6.527  -2.257  -2.239  CDP    XQD   16  
XQD  CEP    C11  C  0  1  N  N  N   -9.075   -9.482   3.936    5.778  -1.446   0.002  CEP    XQD   17  
XQD  CCP    C12  C  0  1  N  N  N   -9.311  -11.763   3.055    7.039  -3.593  -0.191  CCP    XQD   18  
XQD  O6A    O4   O  0  1  N  N  N   -9.529  -13.118   3.449    8.270  -2.884  -0.036  O6A    XQD   19  
XQD  P2A    P1   P  0  1  N  N  N   -9.537  -14.219   2.209    9.579  -3.536   0.638  P2A    XQD   20  
XQD  O4E    O5   O  0  1  N  N  N  -10.666  -13.807   1.268    9.923  -4.791  -0.067  O4E    XQD   21  
XQD  O5A    O6   O  0  1  N  N  N   -9.538  -15.602   2.845    9.283  -3.855   2.188  O5A    XQD   22  
XQD  O3A    O7   O  0  1  N  N  N   -8.185  -13.801   1.429   10.810  -2.504   0.528  O3A    XQD   23  
XQD  P1A    P2   P  0  1  N  N  N   -6.961  -14.770   1.031   12.410  -2.659   0.612  P1A    XQD   24  
XQD  O1A    O8   O  0  1  N  N  N   -6.090  -15.110   2.239   12.849  -2.877   2.145  O1A    XQD   25  
XQD  O2A    O9   O  0  1  N  N  N   -7.456  -15.923   0.196   12.836  -3.825  -0.194  O2A    XQD   26  
XQD  O5C    O10  O  0  1  N  N  N   -6.166  -13.838   0.043   13.109  -1.327   0.038  O5C    XQD   27  
XQD  C5C    C13  C  0  1  N  N  N   -6.869  -13.231  -1.041   14.523  -1.195  -0.118  C5C    XQD   28  
XQD  C4C    C14  C  0  1  N  N  R   -5.892  -12.372  -1.815   14.848   0.189  -0.684  C4C    XQD   29  
XQD  C3C    C15  C  0  1  N  N  S   -4.460  -12.900  -1.709   16.359   0.308  -0.979  C3C    XQD   30  
XQD  O3C    O11  O  0  1  N  N  N   -3.762  -12.463  -2.862   16.618   0.080  -2.366  O3C    XQD   31  
XQD  P3B    P3   P  0  1  N  N  N   -3.552  -13.453  -4.176   17.569  -1.106  -2.896  P3B    XQD   32  
XQD  O9A    O12  O  0  1  N  N  N   -2.628  -12.542  -4.966   18.896  -1.001  -2.251  O9A    XQD   33  
XQD  O8A    O13  O  0  1  N  N  N   -4.939  -13.764  -4.787   16.907  -2.528  -2.532  O8A    XQD   34  
XQD  O7A    O14  O  0  1  N  N  N   -2.888  -14.729  -3.779   17.737  -0.986  -4.493  O7A    XQD   35  
XQD  C2C    C16  C  0  1  N  N  R   -3.862  -12.163  -0.500   16.702   1.766  -0.597  C2C    XQD   36  
XQD  O2C    O15  O  0  1  N  N  N   -2.432  -12.043  -0.495   17.183   2.482  -1.737  O2C    XQD   37  
XQD  O4C    O16  O  0  1  N  N  N   -5.851  -11.024  -1.255   14.582   1.210   0.303  O4C    XQD   38  
XQD  C1A    C17  C  0  1  N  N  R   -4.565  -10.813  -0.614   15.357   2.354  -0.117  C1A    XQD   39  
XQD  N9A    N4   N  0  1  Y  N  N   -4.892  -10.332   0.760   15.572   3.265   1.010  N9A    XQD   40  
XQD  C4A    C18  C  0  1  Y  N  N   -4.638   -9.083   1.186   15.844   4.607   0.929  C4A    XQD   41  
XQD  N3A    N5   N  0  1  Y  N  N   -4.062   -7.987   0.608   15.995   5.476  -0.065  N3A    XQD   42  
XQD  C2A    C19  C  0  1  Y  N  N   -3.953   -6.839   1.303   16.260   6.741   0.183  C2A    XQD   43  
XQD  C8A    C20  C  0  1  Y  N  N   -5.514  -11.031   1.745   15.534   2.935   2.333  C8A    XQD   44  
XQD  N7A    N6   N  0  1  Y  N  N   -5.668  -10.213   2.840   15.770   3.988   3.061  N7A    XQD   45  
XQD  C5A    C21  C  0  1  Y  N  N   -5.149   -8.999   2.481   15.971   5.058   2.254  C5A    XQD   46  
XQD  C6A    C22  C  0  1  Y  N  N   -4.948   -7.819   3.177   16.254   6.417   2.468  C6A    XQD   47  
XQD  N6A    N7   N  0  1  N  N  N   -5.457   -7.713   4.438   16.391   6.918   3.751  N6A    XQD   48  
XQD  N1A    N8   N  0  1  Y  N  N   -4.396   -6.749   2.587   16.389   7.210   1.411  N1A    XQD   49  
XQD  N4P    N9   N  0  1  N  N  N   -6.332  -11.548  11.980   -1.443   0.483   0.132  N4P    XQD   50  
XQD  C3P    C23  C  0  1  N  N  N   -6.286  -11.261  13.435   -2.407   1.479  -0.341  C3P    XQD   51  
XQD  C2P    C24  C  0  1  N  N  N   -6.587  -12.569  14.156   -3.468   1.714   0.736  C2P    XQD   52  
XQD  S1P    S1   S  0  1  N  N  N   -6.425  -12.192  15.934   -4.662   2.947   0.150  S1P    XQD   53  
XQD  C      C25  C  0  1  N  N  S   -5.570  -13.723  16.552   -5.734   3.196   1.592  C      XQD   54  
XQD  O      O17  O  0  1  N  N  N   -4.745  -14.402  15.580   -5.102   2.654   2.754  O      XQD   55  
XQD  CH3    C26  C  0  1  N  N  N   -4.578  -13.230  17.558   -5.977   4.692   1.795  CH3    XQD   56  
XQD  N4A    N10  N  0  1  N  N  N   -6.526  -14.704  17.187   -7.017   2.516   1.371  N4A    XQD   57  
XQD  "C4'"  C27  C  0  1  N  N  S   -7.698  -15.159  16.457   -6.814   1.094   1.064  "C4'"  XQD   58  
XQD  "C3'"  C28  C  0  1  N  N  S   -7.497  -16.598  16.120   -7.346   0.240   2.219  "C3'"  XQD   59  
XQD  "O3'"  O18  O  0  1  N  N  N   -6.289  -16.818  15.308   -6.596   0.518   3.403  "O3'"  XQD   60  
XQD  "C5'"  C29  C  0  1  N  N  R   -8.977  -14.997  17.358   -7.572   0.734  -0.217  "C5'"  XQD   61  
XQD  "C6'"  C30  C  0  1  N  N  N   -9.493  -13.651  17.870   -7.006   1.540  -1.388  "C6'"  XQD   62  
XQD  "O5'"  O19  O  0  1  N  N  N  -10.101  -15.489  16.573   -7.420  -0.662  -0.482  "O5'"  XQD   63  
XQD  "C1'"  C31  C  0  1  N  N  R   -9.968  -16.794  16.089   -7.942  -1.510   0.542  "C1'"  XQD   64  
XQD  "C2'"  C32  C  0  1  N  N  R   -8.710  -16.977  15.278   -7.200  -1.240   1.854  "C2'"  XQD   65  
XQD  "N2'"  N11  N  0  1  N  N  N   -8.631  -18.391  14.887   -7.773  -2.066   2.919  "N2'"  XQD   66  
XQD  "C7'"  C33  C  0  1  N  N  N   -8.434  -18.797  13.620   -7.349  -3.334   3.091  "C7'"  XQD   67  
XQD  "C8'"  C34  C  0  1  N  N  N   -8.287  -20.306  13.401   -7.939  -4.184   4.187  "C8'"  XQD   68  
XQD  "O7'"  O20  O  0  1  N  N  N   -8.408  -17.981  12.686   -6.493  -3.791   2.363  "O7'"  XQD   69  
XQD  "O1'"  O21  O  0  1  N  N  N   -9.995  -17.683  17.224   -9.335  -1.242   0.719  "O1'"  XQD   70  
XQD  PB     P4   P  0  1  N  N  N  -11.376  -18.268  17.803  -10.487  -2.014  -0.099  PB     XQD   71  
XQD  O2B    O22  O  0  1  N  N  N  -10.915  -18.924  19.047  -10.365  -1.656  -1.664  O2B    XQD   72  
XQD  O1B    O23  O  0  1  N  N  N  -12.489  -17.285  17.754  -10.331  -3.474   0.087  O1B    XQD   73  
XQD  O3B    O24  O  0  1  N  N  N  -11.791  -19.298  16.623  -11.931  -1.555   0.445  O3B    XQD   74  
XQD  PA     P5   P  0  1  N  N  N  -11.552  -20.832  16.423  -13.408  -2.192   0.373  PA     XQD   75  
XQD  O4D    O25  O  0  1  N  N  N  -12.297  -21.225  15.175  -13.625  -2.783  -0.967  O4D    XQD   76  
XQD  O5B    O26  O  0  1  N  N  N  -10.097  -21.151  16.430  -13.553  -3.338   1.494  O5B    XQD   77  
XQD  O6B    O27  O  0  1  N  N  N  -12.264  -21.480  17.674  -14.502  -1.041   0.636  O6B    XQD   78  
XQD  C5B    C35  C  0  1  N  N  N  -13.639  -21.319  18.064  -15.909  -1.267   0.535  C5B    XQD   79  
XQD  C4B    C36  C  0  1  N  N  R  -13.872  -22.158  19.341  -16.658   0.030   0.846  C4B    XQD   80  
XQD  C2B    C37  C  0  1  N  N  S  -13.625  -23.644  19.101  -18.177  -0.229   0.845  C2B    XQD   81  
XQD  O4A    O28  O  0  1  N  N  N  -12.861  -24.221  20.127  -18.738   0.081   2.122  O4A    XQD   82  
XQD  C3B    C38  C  0  1  N  N  R  -15.039  -24.179  19.099  -18.726   0.735  -0.236  C3B    XQD   83  
XQD  "O2'"  O29  O  0  1  N  N  N  -15.146  -25.521  19.527  -19.948   1.339   0.193  "O2'"  XQD   84  
XQD  C1B    C39  C  0  1  N  N  R  -15.781  -23.241  20.007  -17.593   1.788  -0.336  C1B    XQD   85  
XQD  O4B    O30  O  0  1  N  N  N  -15.216  -21.961  19.657  -16.390   1.006  -0.175  O4B    XQD   86  
XQD  C2     C40  C  0  1  N  N  N  -18.070  -23.628  20.758  -17.888   3.756  -1.733  C2     XQD   87  
XQD  O2     O31  O  0  1  N  N  N  -17.687  -23.999  21.876  -18.120   4.387  -0.720  O2     XQD   88  
XQD  O4     O32  O  0  1  N  N  N  -21.144  -23.303  19.176  -17.676   4.261  -5.135  O4     XQD   89  
XQD  H1     H1   H  0  1  N  N  N  -20.052  -24.060  21.251  -18.111   5.330  -2.968  H1     XQD   90  
XQD  H2     H2   H  0  1  N  N  N  -19.489  -22.562  17.360  -17.148   1.749  -4.877  H2     XQD   91  
XQD  H3     H3   H  0  1  N  N  N  -17.063  -22.448  17.771  -17.117   0.658  -2.695  H3     XQD   92  
XQD  H4     H4   H  0  1  N  N  N   -6.885  -12.295   9.503    1.058  -0.548   0.742  H4     XQD   93  
XQD  H5     H5   H  0  1  N  N  N   -5.800  -10.978   8.942    0.061  -1.846   0.042  H5     XQD   94  
XQD  H6     H6   H  0  1  N  N  N   -7.699   -9.372   8.831    1.161  -1.506  -2.155  H6     XQD   95  
XQD  H7     H7   H  0  1  N  N  N   -8.802  -10.552   9.616    2.158  -0.209  -1.455  H7     XQD   96  
XQD  H8     H8   H  0  1  N  N  N   -8.703  -11.931   7.626    2.501  -2.536   0.108  H8     XQD   97  
XQD  H9     H9   H  0  1  N  N  N   -8.473  -12.449   5.643    4.831  -4.267  -1.730  H9     XQD   98  
XQD  H10    H10  H  0  1  N  N  N   -6.362  -10.850   4.800    4.133  -3.284   0.911  H10    XQD   99  
XQD  H11    H11  H  0  1  N  N  N  -10.562  -10.474   6.067    5.825  -1.556  -2.690  H11    XQD  100  
XQD  H12    H12  H  0  1  N  N  N  -11.471  -10.742   4.541    7.499  -1.777  -2.127  H12    XQD  101  
XQD  H13    H13  H  0  1  N  N  N  -10.773  -12.140   5.428    6.626  -3.134  -2.878  H13    XQD  102  
XQD  H14    H14  H  0  1  N  N  N   -9.072   -8.841   4.830    5.043  -0.798  -0.478  H14    XQD  103  
XQD  H15    H15  H  0  1  N  N  N   -8.103   -9.405   3.426    5.408  -1.750   0.982  H15    XQD  104  
XQD  H16    H16  H  0  1  N  N  N   -9.874   -9.156   3.254    6.716  -0.905   0.120  H16    XQD  105  
XQD  H17    H17  H  0  1  N  N  N   -8.340  -11.663   2.547    6.670  -3.898   0.789  H17    XQD  106  
XQD  H18    H18  H  0  1  N  N  N  -10.113  -11.426   2.382    7.204  -4.477  -0.808  H18    XQD  107  
XQD  H19    H19  H  0  1  N  N  N  -10.305  -16.083   2.556    9.050  -3.076   2.712  H19    XQD  108  
XQD  H20    H20  H  0  1  N  N  N   -5.979  -16.052   2.295   12.601  -2.150   2.733  H20    XQD  109  
XQD  H21    H21  H  0  1  N  N  N   -7.687  -12.607  -0.652   15.009  -1.315   0.850  H21    XQD  110  
XQD  H22    H22  H  0  1  N  N  N   -7.283  -14.009  -1.699   14.886  -1.962  -0.803  H22    XQD  111  
XQD  H23    H23  H  0  1  N  N  N   -6.190  -12.337  -2.873   14.269   0.375  -1.588  H23    XQD  112  
XQD  H24    H24  H  0  1  N  N  N   -4.438  -13.991  -1.570   16.925  -0.391  -0.363  H24    XQD  113  
XQD  H25    H25  H  0  1  N  N  N   -5.026  -13.316  -5.620   16.033  -2.666  -2.922  H25    XQD  114  
XQD  H26    H26  H  0  1  N  N  N   -1.994  -14.735  -4.100   18.299  -1.670  -4.882  H26    XQD  115  
XQD  H27    H27  H  0  1  N  N  N   -4.201  -12.662   0.419   17.439   1.787   0.205  H27    XQD  116  
XQD  H28    H28  H  0  1  N  N  N   -2.156  -11.576   0.285   17.414   3.403  -1.554  H28    XQD  117  
XQD  H29    H29  H  0  1  N  N  N   -3.943  -10.088  -1.159   14.856   2.873  -0.934  H29    XQD  118  
XQD  H30    H30  H  0  1  N  N  N   -3.506   -5.975   0.834   16.378   7.420  -0.648  H30    XQD  119  
XQD  H31    H31  H  0  1  N  N  N   -5.835  -12.060   1.679   15.336   1.946   2.719  H31    XQD  120  
XQD  H32    H32  H  0  1  N  N  N   -5.336   -6.777   4.769   16.290   6.330   4.515  H32    XQD  121  
XQD  H33    H33  H  0  1  N  N  N   -6.431   -7.938   4.424   16.587   7.859   3.886  H33    XQD  122  
XQD  H34    H34  H  0  1  N  N  N   -6.146  -12.493  11.712   -1.546   0.088   1.012  H34    XQD  123  
XQD  H35    H35  H  0  1  N  N  N   -5.288  -10.895  13.717   -1.889   2.415  -0.551  H35    XQD  124  
XQD  H36    H36  H  0  1  N  N  N   -7.041  -10.504  13.695   -2.887   1.117  -1.251  H36    XQD  125  
XQD  H37    H37  H  0  1  N  N  N   -7.608  -12.909  13.926   -3.986   0.778   0.946  H37    XQD  126  
XQD  H38    H38  H  0  1  N  N  N   -5.867  -13.346  13.860   -2.989   2.076   1.645  H38    XQD  127  
XQD  H39    H39  H  0  1  N  N  N   -4.350  -15.168  15.979   -4.927   1.705   2.699  H39    XQD  128  
XQD  H40    H40  H  0  1  N  N  N   -5.104  -12.689  18.358   -6.459   5.106   0.909  H40    XQD  129  
XQD  H41    H41  H  0  1  N  N  N   -4.037  -14.085  17.989   -6.622   4.841   2.662  H41    XQD  130  
XQD  H42    H42  H  0  1  N  N  N   -3.863  -12.554  17.067   -5.025   5.196   1.959  H42    XQD  131  
XQD  H43    H43  H  0  1  N  N  N   -6.858  -14.278  18.029   -7.547   2.971   0.642  H43    XQD  132  
XQD  H45    H45  H  0  1  N  N  N   -7.832  -14.572  15.537   -5.751   0.900   0.925  H45    XQD  133  
XQD  H46    H46  H  0  1  N  N  N   -7.468  -17.208  17.035   -8.397   0.471   2.390  H46    XQD  134  
XQD  H47    H47  H  0  1  N  N  N   -5.520  -16.587  15.815   -6.880   0.011   4.176  H47    XQD  135  
XQD  H48    H48  H  0  1  N  N  N   -8.845  -15.656  18.229   -8.629   0.968  -0.092  H48    XQD  136  
XQD  H49    H49  H  0  1  N  N  N  -10.397  -13.811  18.475   -5.968   1.253  -1.560  H49    XQD  137  
XQD  H50    H50  H  0  1  N  N  N   -8.719  -13.172  18.487   -7.592   1.339  -2.285  H50    XQD  138  
XQD  H51    H51  H  0  1  N  N  N   -9.734  -13.002  17.015   -7.054   2.604  -1.154  H51    XQD  139  
XQD  H52    H52  H  0  1  N  N  N  -10.824  -17.028  15.439   -7.806  -2.553   0.255  H52    XQD  140  
XQD  H53    H53  H  0  1  N  N  N   -8.750  -16.337  14.384   -6.144  -1.483   1.731  H53    XQD  141  
XQD  H54    H54  H  0  1  N  N  N   -8.729  -19.087  15.599   -8.457  -1.701   3.501  H54    XQD  142  
XQD  H55    H55  H  0  1  N  N  N   -8.162  -20.511  12.327   -8.807  -4.719   3.805  H55    XQD  143  
XQD  H56    H56  H  0  1  N  N  N   -7.406  -20.672  13.949   -7.193  -4.900   4.532  H56    XQD  144  
XQD  H57    H57  H  0  1  N  N  N   -9.187  -20.819  13.770   -8.241  -3.546   5.018  H57    XQD  145  
XQD  H58    H58  H  0  1  N  N  N  -11.436  -18.617  19.779  -10.457  -0.714  -1.861  H58    XQD  146  
XQD  H59    H59  H  0  1  N  N  N   -9.860  -21.570  15.611  -13.423  -3.021   2.399  H59    XQD  147  
XQD  H60    H60  H  0  1  N  N  N  -13.847  -20.259  18.270  -16.153  -1.594  -0.476  H60    XQD  148  
XQD  H61    H61  H  0  1  N  N  N  -14.300  -21.673  17.259  -16.205  -2.038   1.247  H61    XQD  149  
XQD  H62    H62  H  0  1  N  N  N  -13.210  -21.797  20.142  -16.346   0.414   1.817  H62    XQD  150  
XQD  H63    H63  H  0  1  N  N  N  -13.162  -23.793  18.114  -18.388  -1.264   0.578  H63    XQD  151  
XQD  H64    H64  H  0  1  N  N  N  -11.980  -23.867  20.104  -19.693  -0.064   2.178  H64    XQD  152  
XQD  H65    H65  H  0  1  N  N  N  -15.447  -24.079  18.083  -18.862   0.217  -1.185  H65    XQD  153  
XQD  H66    H66  H  0  1  N  N  N  -16.057  -25.790  19.501  -20.662   0.708   0.357  H66    XQD  154  
XQD  H67    H67  H  0  1  N  N  N  -15.564  -23.488  21.057  -17.684   2.526   0.461  H67    XQD  155  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XQD  O9A    P3B    DOUB  N  N    1  
XQD  O8A    P3B    SING  N  N    2  
XQD  P3B    O7A    SING  N  N    3  
XQD  P3B    O3C    SING  N  N    4  
XQD  O3C    C3C    SING  N  N    5  
XQD  C4C    C3C    SING  N  N    6  
XQD  C4C    O4C    SING  N  N    7  
XQD  C4C    C5C    SING  N  N    8  
XQD  C3C    C2C    SING  N  N    9  
XQD  O4C    C1A    SING  N  N   10  
XQD  C5C    O5C    SING  N  N   11  
XQD  C1A    C2C    SING  N  N   12  
XQD  C1A    N9A    SING  N  N   13  
XQD  C2C    O2C    SING  N  N   14  
XQD  O5C    P1A    SING  N  N   15  
XQD  O2A    P1A    DOUB  N  N   16  
XQD  N3A    C4A    DOUB  Y  N   17  
XQD  N3A    C2A    SING  Y  N   18  
XQD  N9A    C4A    SING  Y  N   19  
XQD  N9A    C8A    SING  Y  N   20  
XQD  P1A    O3A    SING  N  N   21  
XQD  P1A    O1A    SING  N  N   22  
XQD  C4A    C5A    SING  Y  N   23  
XQD  O4E    P2A    DOUB  N  N   24  
XQD  C2A    N1A    DOUB  Y  N   25  
XQD  O3A    P2A    SING  N  N   26  
XQD  C8A    N7A    DOUB  Y  N   27  
XQD  P2A    O5A    SING  N  N   28  
XQD  P2A    O6A    SING  N  N   29  
XQD  C5A    N7A    SING  Y  N   30  
XQD  C5A    C6A    DOUB  Y  N   31  
XQD  N1A    C6A    SING  Y  N   32  
XQD  CCP    O6A    SING  N  N   33  
XQD  CCP    CBP    SING  N  N   34  
XQD  C6A    N6A    SING  N  N   35  
XQD  CEP    CBP    SING  N  N   36  
XQD  CBP    CDP    SING  N  N   37  
XQD  CBP    CAP    SING  N  N   38  
XQD  OAP    CAP    SING  N  N   39  
XQD  CAP    C9P    SING  N  N   40  
XQD  O9P    C9P    DOUB  N  N   41  
XQD  C9P    N8P    SING  N  N   42  
XQD  N8P    C7P    SING  N  N   43  
XQD  C7P    C6P    SING  N  N   44  
XQD  C6P    C5P    SING  N  N   45  
XQD  C5P    O5P    DOUB  N  N   46  
XQD  C5P    N4P    SING  N  N   47  
XQD  N4P    C3P    SING  N  N   48  
XQD  "O7'"  "C7'"  DOUB  N  N   49  
XQD  "C8'"  "C7'"  SING  N  N   50  
XQD  C3P    C2P    SING  N  N   51  
XQD  "C7'"  "N2'"  SING  N  N   52  
XQD  C2P    S1P    SING  N  N   53  
XQD  "N2'"  "C2'"  SING  N  N   54  
XQD  O4D    PA     DOUB  N  N   55  
XQD  "C2'"  "C1'"  SING  N  N   56  
XQD  "C2'"  "C3'"  SING  N  N   57  
XQD  "O3'"  "C3'"  SING  N  N   58  
XQD  O      C      SING  N  N   59  
XQD  S1P    C      SING  N  N   60  
XQD  "C1'"  "O5'"  SING  N  N   61  
XQD  "C1'"  "O1'"  SING  N  N   62  
XQD  "C3'"  "C4'"  SING  N  N   63  
XQD  PA     O5B    SING  N  N   64  
XQD  PA     O3B    SING  N  N   65  
XQD  PA     O6B    SING  N  N   66  
XQD  "C4'"  N4A    SING  N  N   67  
XQD  "C4'"  "C5'"  SING  N  N   68  
XQD  C      N4A    SING  N  N   69  
XQD  C      CH3    SING  N  N   70  
XQD  "O5'"  "C5'"  SING  N  N   71  
XQD  O3B    PB     SING  N  N   72  
XQD  "O1'"  PB     SING  N  N   73  
XQD  "C5'"  "C6'"  SING  N  N   74  
XQD  O6B    C5B    SING  N  N   75  
XQD  O1B    PB     DOUB  N  N   76  
XQD  PB     O2B    SING  N  N   77  
XQD  C5B    C4B    SING  N  N   78  
XQD  C5     C6     DOUB  N  N   79  
XQD  C5     C4     SING  N  N   80  
XQD  C6     N1     SING  N  N   81  
XQD  C3B    C2B    SING  N  N   82  
XQD  C3B    "O2'"  SING  N  N   83  
XQD  C3B    C1B    SING  N  N   84  
XQD  C2B    C4B    SING  N  N   85  
XQD  C2B    O4A    SING  N  N   86  
XQD  O4     C4     DOUB  N  N   87  
XQD  C4     N3     SING  N  N   88  
XQD  C4B    O4B    SING  N  N   89  
XQD  O4B    C1B    SING  N  N   90  
XQD  N1     C1B    SING  N  N   91  
XQD  N1     C2     SING  N  N   92  
XQD  N3     C2     SING  N  N   93  
XQD  C2     O2     DOUB  N  N   94  
XQD  N3     H1     SING  N  N   95  
XQD  C5     H2     SING  N  N   96  
XQD  C6     H3     SING  N  N   97  
XQD  C6P    H4     SING  N  N   98  
XQD  C6P    H5     SING  N  N   99  
XQD  C7P    H6     SING  N  N  100  
XQD  C7P    H7     SING  N  N  101  
XQD  N8P    H8     SING  N  N  102  
XQD  CAP    H9     SING  N  N  103  
XQD  OAP    H10    SING  N  N  104  
XQD  CDP    H11    SING  N  N  105  
XQD  CDP    H12    SING  N  N  106  
XQD  CDP    H13    SING  N  N  107  
XQD  CEP    H14    SING  N  N  108  
XQD  CEP    H15    SING  N  N  109  
XQD  CEP    H16    SING  N  N  110  
XQD  CCP    H17    SING  N  N  111  
XQD  CCP    H18    SING  N  N  112  
XQD  O5A    H19    SING  N  N  113  
XQD  O1A    H20    SING  N  N  114  
XQD  C5C    H21    SING  N  N  115  
XQD  C5C    H22    SING  N  N  116  
XQD  C4C    H23    SING  N  N  117  
XQD  C3C    H24    SING  N  N  118  
XQD  O8A    H25    SING  N  N  119  
XQD  O7A    H26    SING  N  N  120  
XQD  C2C    H27    SING  N  N  121  
XQD  O2C    H28    SING  N  N  122  
XQD  C1A    H29    SING  N  N  123  
XQD  C2A    H30    SING  N  N  124  
XQD  C8A    H31    SING  N  N  125  
XQD  N6A    H32    SING  N  N  126  
XQD  N6A    H33    SING  N  N  127  
XQD  N4P    H34    SING  N  N  128  
XQD  C3P    H35    SING  N  N  129  
XQD  C3P    H36    SING  N  N  130  
XQD  C2P    H37    SING  N  N  131  
XQD  C2P    H38    SING  N  N  132  
XQD  O      H39    SING  N  N  133  
XQD  CH3    H40    SING  N  N  134  
XQD  CH3    H41    SING  N  N  135  
XQD  CH3    H42    SING  N  N  136  
XQD  N4A    H43    SING  N  N  137  
XQD  "C4'"  H45    SING  N  N  138  
XQD  "C3'"  H46    SING  N  N  139  
XQD  "O3'"  H47    SING  N  N  140  
XQD  "C5'"  H48    SING  N  N  141  
XQD  "C6'"  H49    SING  N  N  142  
XQD  "C6'"  H50    SING  N  N  143  
XQD  "C6'"  H51    SING  N  N  144  
XQD  "C1'"  H52    SING  N  N  145  
XQD  "C2'"  H53    SING  N  N  146  
XQD  "N2'"  H54    SING  N  N  147  
XQD  "C8'"  H55    SING  N  N  148  
XQD  "C8'"  H56    SING  N  N  149  
XQD  "C8'"  H57    SING  N  N  150  
XQD  O2B    H58    SING  N  N  151  
XQD  O5B    H59    SING  N  N  152  
XQD  C5B    H60    SING  N  N  153  
XQD  C5B    H61    SING  N  N  154  
XQD  C4B    H62    SING  N  N  155  
XQD  C2B    H63    SING  N  N  156  
XQD  O4A    H64    SING  N  N  157  
XQD  C3B    H65    SING  N  N  158  
XQD  "O2'"  H66    SING  N  N  159  
XQD  C1B    H67    SING  N  N  160  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XQD  SMILES            ACDLabs               12.01  "N6(C5C(C(C(COP(OP(OC4OC(C(NC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1C(C(O)C(O1)n2c3c(nc2)c(N)ncn3)OP(O)(=O)O)(C)O)C(O)C4NC(C)=O)C)(O)=O)(O)=O)O5)O)O)C(NC(C=C6)=O)=O"  
XQD  InChI             InChI                 1.03   "InChI=1S/C40H66N11O32P5S/c1-17-23(27(56)24(47-18(2)52)37(77-17)81-88(72,73)83-86(68,69)74-12-19-26(55)28(57)35(78-19)50-10-7-22(54)48-38(50)61)49-40(5,62)89-11-9-42-21(53)6-8-43-34(60)31(59)39(3,4)14-76-87(70,71)82-85(66,67)75-13-20-30(80-84(63,64)65)29(58)36(79-20)51-16-46-25-32(41)44-15-45-33(25)51/h7,10,15-17,19-20,23-24,26-31,35-37,49,55-59,62H,6,8-9,11-14H2,1-5H3,(H,42,53)(H,43,60)(H,47,52)(H,66,67)(H,68,69)(H,70,71)(H,72,73)(H2,41,44,45)(H,48,54,61)(H2,63,64,65)/t17-,19-,20-,23-,24-,26-,27+,28-,29-,30-,31+,35-,36-,37-,40+/m1/s1"  
XQD  InChIKey          InChI                 1.03   CHRNLGHDEXUXFL-IOFFXKHASA-N  
XQD  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](NC(C)=O)[C@@H](O)[C@@H]1N[C@@](C)(O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O[P](O)(O)=O)n5cnc6c(N)ncnc56"  
XQD  SMILES            CACTVS                3.385  "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](NC(C)=O)[CH](O)[CH]1N[C](C)(O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O[P](O)(O)=O)n5cnc6c(N)ncnc56"  
XQD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C)O)N[C@@](C)(O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)OP(=O)(O)O)O"  
XQD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C)O)NC(C)(O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)OP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XQD  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3R,4S,5S,6R)-3-(acetylamino)-5-({(3R,5S,9R,19S)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9,19-tetrahydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-18-thia-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaicosan-19-yl}amino)-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
XQD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{R},4~{S},5~{S},6~{R})-3-acetamido-5-[[(1~{S})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-1-oxidanyl-ethyl]amino]-6-methyl-4-oxidanyl-oxan-2-yl] [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate"  
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_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
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XQD  "Create component"  2020-12-31  RCSB  
XQD  "Initial release"   2021-03-03  RCSB  
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