data_X9D
#

_chem_comp.id                                   X9D
_chem_comp.name                                 "4-[(E)-({1-carboxy-2-[(3R)-3-hydroxy-2-oxo-2,3-dihydro-1H-indol-3-yl]ethan-1-id-1-yl}iminio)methyl]-2-methyl-5-[(phosphonooxy)methyl]pyridin-1-ium-3-olate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 N3 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-07
_chem_comp.pdbx_modified_date                   2021-01-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       465.351
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X9D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XT0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X9D  C05   C1   C   0  1  N  N  N  82.243  14.338  13.803   3.635   0.287  -0.130  C05   X9D   1  
X9D  C06   C2   C   0  1  Y  N  N  83.258  14.240  12.694   2.961  -1.061  -0.110  C06   X9D   2  
X9D  C07   C3   C   0  1  Y  N  N  83.105  14.968  11.518   1.550  -1.154  -0.121  C07   X9D   3  
X9D  C08   C4   C   0  1  N  N  N  81.990  15.968  11.559   0.752   0.010  -0.146  C08   X9D   4  
X9D  C10   C5   C  -1  1  N  N  S  80.046  16.572   9.967  -1.318   0.991  -0.184  C10   X9D   5  
X9D  C11   C6   C   0  1  N  N  N  79.290  17.033  11.194  -2.711   0.987  -0.760  C11   X9D   6  
X9D  C12   C7   C   0  1  N  N  R  78.153  16.016  11.265  -3.717   0.654   0.343  C12   X9D   7  
X9D  C14   C8   C   0  1  Y  N  N  77.305  16.244  12.469  -5.130   0.723  -0.190  C14   X9D   8  
X9D  C15   C9   C   0  1  Y  N  N  76.001  16.534  12.079  -5.666  -0.550  -0.045  C15   X9D   9  
X9D  C17   C10  C   0  1  N  N  N  77.131  16.218  10.127  -3.559  -0.785   0.788  C17   X9D  10  
X9D  C19   C11  C   0  1  Y  N  N  75.016  16.790  13.021  -6.976  -0.781  -0.460  C19   X9D  11  
X9D  C20   C12  C   0  1  Y  N  N  75.369  16.749  14.368  -7.721   0.244  -1.005  C20   X9D  12  
X9D  C21   C13  C   0  1  Y  N  N  76.683  16.450  14.760  -7.176   1.507  -1.145  C21   X9D  13  
X9D  C22   C14  C   0  1  Y  N  N  77.666  16.190  13.802  -5.875   1.744  -0.736  C22   X9D  14  
X9D  C23   C15  C   0  1  N  N  N  80.425  17.949   9.096  -0.831   2.130   0.457  C23   X9D  15  
X9D  C26   C16  C   0  1  Y  N  N  84.081  14.849  10.526   0.954  -2.440  -0.108  C26   X9D  16  
X9D  C28   C17  C   0  1  Y  N  N  85.158  13.999  10.728   1.752  -3.539  -0.085  C28   X9D  17  
X9D  C29   C18  C   0  1  N  N  N  86.206  13.847   9.670   1.131  -4.912  -0.071  C29   X9D  18  
X9D  C31   C19  C   0  1  Y  N  N  84.359  13.404  12.842   3.700  -2.194  -0.087  C31   X9D  19  
X9D  N09   N1   N   1  1  N  N  N  81.625  16.031  10.102  -0.554  -0.090  -0.288  N09   X9D  20  
X9D  N16   N2   N   0  1  N  N  N  75.807  16.542  10.678  -4.725  -1.407   0.528  N16   X9D  21  
X9D  N30   N3   N   1  1  Y  N  N  85.269  13.302  11.862   3.104  -3.411  -0.075  N30   X9D  22  
X9D  O01   O1   O   0  1  N  N  N  81.379  11.530  13.830   5.951   2.142  -1.527  O01   X9D  23  
X9D  O03   O2   O   0  1  N  N  N  79.081  12.276  13.497   5.789   2.255   0.990  O03   X9D  24  
X9D  O04   O3   O   0  1  N  N  N  80.962  13.947  13.364   5.052   0.111  -0.120  O04   X9D  25  
X9D  O13   O4   O   0  1  N  N  N  78.804  14.775  11.275  -3.556   1.541   1.451  O13   X9D  26  
X9D  O18   O5   O   0  1  N  N  N  77.368  16.134   8.952  -2.571  -1.285   1.282  O18   X9D  27  
X9D  O24   O6   O   0  1  N  N  N  80.128  17.815   7.889  -0.118   2.019   1.440  O24   X9D  28  
X9D  O25   O7   O   0  1  N  N  N  80.866  19.047   9.502  -1.150   3.359  -0.011  O25   X9D  29  
X9D  O27   O8   O  -1  1  N  N  N  83.979  15.543   9.371  -0.399  -2.572  -0.117  O27   X9D  30  
X9D  O32   O9   O   0  1  N  N  N  80.300  12.863  15.514   7.591   0.782   0.013  O32   X9D  31  
X9D  P02   P1   P   0  1  N  N  N  80.380  12.618  14.061   6.089   1.342  -0.137  P02   X9D  32  
X9D  H051  H1   H   0  0  N  N  N  82.553  13.683  14.631   3.342   0.826  -1.031  H051  X9D  33  
X9D  H052  H2   H   0  0  N  N  N  82.198  15.379  14.156   3.333   0.857   0.749  H052  X9D  34  
X9D  H081  H4   H   0  0  N  N  N  81.567  16.496  12.401   1.211   0.982  -0.047  H081  X9D  35  
X9D  H111  H6   H   0  0  N  N  N  79.922  16.990  12.093  -2.936   1.971  -1.172  H111  X9D  36  
X9D  H112  H7   H   0  0  N  N  N  78.905  18.055  11.066  -2.776   0.239  -1.550  H112  X9D  37  
X9D  H191  H8   H   0  0  N  N  N  74.004  17.015  12.719  -7.409  -1.765  -0.354  H191  X9D  38  
X9D  H201  H9   H   0  0  N  N  N  74.621  16.950  15.121  -8.736   0.058  -1.326  H201  X9D  39  
X9D  H211  H10  H   0  0  N  N  N  76.936  16.421  15.810  -7.763   2.306  -1.573  H211  X9D  40  
X9D  H221  H11  H   0  0  N  N  N  78.678  15.954  14.094  -5.446   2.730  -0.843  H221  X9D  41  
X9D  H292  H12  H   0  0  N  N  N  87.002  14.588   9.833   0.991  -5.258  -1.095  H292  X9D  42  
X9D  H293  H13  H   0  0  N  N  N  86.632  12.834   9.719   1.788  -5.602   0.459  H293  X9D  43  
X9D  H291  H14  H   0  0  N  N  N  85.753  14.007   8.680   0.166  -4.869   0.434  H291  X9D  44  
X9D  H311  H15  H   0  0  N  N  N  84.482  12.834  13.751   4.778  -2.128  -0.083  H311  X9D  45  
X9D  H091  H17  H   0  0  N  N  N  82.226  15.790   9.340  -0.957  -0.954  -0.469  H091  X9D  46  
X9D  H161  H18  H   0  0  N  N  N  74.962  16.726  10.176  -4.893  -2.343   0.718  H161  X9D  47  
X9D  H4    H19  H   0  1  N  N  N  80.968  10.818  13.354   6.134   1.605  -2.310  H4    X9D  48  
X9D  H131  H20  H   0  0  N  N  N  79.410  14.741  12.005  -4.169   1.375   2.180  H131  X9D  49  
X9D  H5    H21  H   0  1  N  N  N  80.912  19.658   8.776  -0.767   4.085   0.498  H5    X9D  50  
X9D  H7    H23  H   0  1  N  N  N  79.403  12.749  15.806   8.270   1.470   0.011  H7    X9D  51  
X9D  H301  H24  H   0  0  N  N  N  86.050  12.689  11.983   3.655  -4.209  -0.058  H301  X9D  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X9D  O24  C23   DOUB  N  N   1  
X9D  O18  C17   DOUB  N  N   2  
X9D  C23  O25   SING  N  N   3  
X9D  C23  C10   SING  N  N   4  
X9D  O27  C26   SING  N  N   5  
X9D  C29  C28   SING  N  N   6  
X9D  C10  N09   SING  N  N   7  
X9D  C10  C11   SING  N  N   8  
X9D  N09  C08   DOUB  N  N   9  
X9D  C17  N16   SING  N  N  10  
X9D  C17  C12   SING  N  N  11  
X9D  C26  C28   DOUB  Y  N  12  
X9D  C26  C07   SING  Y  N  13  
X9D  N16  C15   SING  N  N  14  
X9D  C28  N30   SING  Y  N  15  
X9D  C11  C12   SING  N  N  16  
X9D  C12  O13   SING  N  N  17  
X9D  C12  C14   SING  N  N  18  
X9D  C07  C08   SING  N  N  19  
X9D  C07  C06   DOUB  Y  N  20  
X9D  N30  C31   DOUB  Y  N  21  
X9D  C15  C14   DOUB  Y  N  22  
X9D  C15  C19   SING  Y  N  23  
X9D  C14  C22   SING  Y  N  24  
X9D  C06  C31   SING  Y  N  25  
X9D  C06  C05   SING  N  N  26  
X9D  C19  C20   DOUB  Y  N  27  
X9D  O04  C05   SING  N  N  28  
X9D  O04  P02   SING  N  N  29  
X9D  O03  P02   DOUB  N  N  30  
X9D  C22  C21   DOUB  Y  N  31  
X9D  O01  P02   SING  N  N  32  
X9D  P02  O32   SING  N  N  33  
X9D  C20  C21   SING  Y  N  34  
X9D  C05  H051  SING  N  N  35  
X9D  C05  H052  SING  N  N  36  
X9D  C08  H081  SING  N  N  37  
X9D  C11  H111  SING  N  N  38  
X9D  C11  H112  SING  N  N  39  
X9D  C19  H191  SING  N  N  40  
X9D  C20  H201  SING  N  N  41  
X9D  C21  H211  SING  N  N  42  
X9D  C22  H221  SING  N  N  43  
X9D  C29  H292  SING  N  N  44  
X9D  C29  H293  SING  N  N  45  
X9D  C29  H291  SING  N  N  46  
X9D  C31  H311  SING  N  N  47  
X9D  N09  H091  SING  N  N  48  
X9D  N16  H161  SING  N  N  49  
X9D  O01  H4    SING  N  N  50  
X9D  O13  H131  SING  N  N  51  
X9D  O25  H5    SING  N  N  52  
X9D  O32  H7    SING  N  N  53  
X9D  N30  H301  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X9D  SMILES            ACDLabs               12.01  "C(c1c[nH+]c(c(c1[C@H]=[NH+][C-](CC3(O)c2ccccc2NC3=O)C(O)=O)[O-])C)OP(O)(=O)O"  
X9D  InChI             InChI                 1.03   "InChI=1S/C19H20N3O9P/c1-10-16(23)12(11(7-20-10)9-31-32(28,29)30)8-21-15(17(24)25)6-19(27)13-4-2-3-5-14(13)22-18(19)26/h2-5,7-8,21,23,27H,6,9H2,1H3,(H,22,26)(H,24,25)(H2,28,29,30)/b21-8+/t19-/m1/s1"  
X9D  InChIKey          InChI                 1.03   KVWUPOTUZSGNFK-JWWNMXMMSA-N  
X9D  SMILES_CANONICAL  CACTVS                3.385  "Cc1[nH+]cc(CO[P](O)(O)=O)c(C=[NH+][C-](C[C@]2(O)C(=O)Nc3ccccc23)C(O)=O)c1[O-]"  
X9D  SMILES            CACTVS                3.385  "Cc1[nH+]cc(CO[P](O)(O)=O)c(C=[NH+][C-](C[C]2(O)C(=O)Nc3ccccc23)C(O)=O)c1[O-]"  
X9D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)/C=[NH+]/[C@@-](C[C@]2(c3ccccc3NC2=O)O)C(=O)O)[O-]"  
X9D  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)C=[NH+][C-](CC2(c3ccccc3NC2=O)O)C(=O)O)[O-]"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X9D  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-[(E)-({1-carboxy-2-[(3R)-3-hydroxy-2-oxo-2,3-dihydro-1H-indol-3-yl]ethan-1-id-1-yl}iminio)methyl]-2-methyl-5-[(phosphonooxy)methyl]pyridin-1-ium-3-olate"  
X9D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-methyl-4-[(~{E})-[(2~{S})-1-oxidanyl-1-oxidanylidene-3-[(3~{R})-3-oxidanyl-2-oxidanylidene-1~{H}-indol-3-yl]propan-2-yl]azaniumylidenemethyl]-5-(phosphonooxymethyl)pyridin-1-ium-3-olate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X9D  "Create component"  2020-12-07  RCSB  
X9D  "Initial release"   2021-02-03  RCSB  
##
