data_VKD
#

_chem_comp.id                                   VKD
_chem_comp.name                                 Cobimetinib
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H21 F3 I N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "{3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]phenyl}{3-hydroxy-3-[(2R)-piperidin-2-yl]azetidin-1-yl}methanone"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-21
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       531.310
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VKD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JUS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VKD  C25  C1   C  0  1  N  N  N  -50.774  74.888   6.275  -6.485   2.672  -0.283  C25  VKD   1  
VKD  C26  C2   C  0  1  N  N  N  -49.365  74.452   6.438  -7.595   3.351   0.525  C26  VKD   2  
VKD  C27  C3   C  0  1  N  N  N  -49.215  73.220   7.281  -8.759   2.372   0.701  C27  VKD   3  
VKD  N29  N1   N  0  1  N  N  N  -51.349  73.720   8.440  -7.194   0.492   0.581  N29  VKD   4  
VKD  C30  C4   C  0  1  N  N  N  -51.823  76.143   9.718  -4.127  -0.319   0.432  C30  VKD   5  
VKD  C10  C5   C  0  1  Y  N  N  -55.360  78.410  11.668  -0.087  -2.122  -0.513  C10  VKD   6  
VKD  C12  C6   C  0  1  Y  N  N  -55.231  80.954  12.048   1.841  -0.733  -0.943  C12  VKD   7  
VKD  C13  C7   C  0  1  Y  N  N  -54.875  80.780  13.377   2.173  -0.768   0.405  C13  VKD   8  
VKD  C14  C8   C  0  1  Y  N  N  -54.693  81.852  14.223   3.284  -0.084   0.860  C14  VKD   9  
VKD  C15  C9   C  0  1  Y  N  N  -54.837  83.140  13.735   4.065   0.637  -0.025  C15  VKD  10  
VKD  C17  C10  C  0  1  Y  N  N  -55.180  83.339  12.394   3.739   0.675  -1.369  C17  VKD  11  
VKD  C18  C11  C  0  1  Y  N  N  -55.378  82.245  11.551   2.628  -0.007  -1.831  C18  VKD  12  
VKD  C02  C12  C  0  1  N  N  N  -53.886  77.914   9.647  -1.720  -0.237  -0.562  C02  VKD  13  
VKD  C03  C13  C  0  1  Y  N  N  -54.615  77.488  10.934  -1.300  -1.564  -0.078  C03  VKD  14  
VKD  C04  C14  C  0  1  Y  N  N  -54.532  76.171  11.370  -2.107  -2.273   0.817  C04  VKD  15  
VKD  C05  C15  C  0  1  Y  N  N  -55.170  75.749  12.526  -1.711  -3.513   1.266  C05  VKD  16  
VKD  C06  C16  C  0  1  Y  N  N  -55.911  76.656  13.262  -0.512  -4.065   0.836  C06  VKD  17  
VKD  C08  C17  C  0  1  Y  N  N  -56.015  77.978  12.833   0.298  -3.375  -0.050  C08  VKD  18  
VKD  C21  C18  C  0  1  N  N  N  -51.751  77.407   8.052  -3.648   1.517  -0.481  C21  VKD  19  
VKD  C22  C19  C  0  1  N  N  N  -51.108  76.130   8.447  -4.950   0.702  -0.375  C22  VKD  20  
VKD  C24  C20  C  0  1  N  N  R  -51.531  74.935   7.609  -6.045   1.395   0.438  C24  VKD  21  
VKD  C28  C21  C  0  1  N  N  N  -49.931  73.317   8.615  -8.253   1.104   1.393  C28  VKD  22  
VKD  F07  F1   F  0  1  N  N  N  -56.544  76.233  14.402  -0.133  -5.282   1.284  F07  VKD  23  
VKD  F09  F2   F  0  1  N  N  N  -56.761  78.841  13.588   1.463  -3.919  -0.464  F09  VKD  24  
VKD  F19  F3   F  0  1  N  N  N  -55.710  82.435  10.240   2.309   0.031  -3.143  F19  VKD  25  
VKD  I16  I1   I  0  1  N  N  N  -54.517  84.732  15.092   5.747   1.673   0.671  I16  VKD  26  
VKD  N11  N2   N  0  1  N  N  N  -55.442  79.792  11.190   0.720  -1.429  -1.408  N11  VKD  27  
VKD  N20  N3   N  0  1  N  N  N  -52.667  77.255   9.204  -2.945   0.234  -0.258  N20  VKD  28  
VKD  O01  O1   O  0  1  N  N  N  -54.304  78.795   8.979  -0.961   0.432  -1.237  O01  VKD  29  
VKD  O23  O2   O  0  1  N  N  N  -49.740  76.287   8.650  -5.419   0.201  -1.628  O23  VKD  30  
VKD  H1   H1   H  0  1  N  N  N  -50.783  75.893   5.828  -6.859   2.419  -1.275  H1   VKD  31  
VKD  H2   H2   H  0  1  N  N  N  -51.286  74.184   5.603  -5.636   3.349  -0.375  H2   VKD  32  
VKD  H3   H3   H  0  1  N  N  N  -48.947  74.246   5.442  -7.210   3.639   1.503  H3   VKD  33  
VKD  H4   H4   H  0  1  N  N  N  -48.800  75.269   6.911  -7.941   4.237  -0.007  H4   VKD  34  
VKD  H5   H5   H  0  1  N  N  N  -49.626  72.364   6.725  -9.535   2.835   1.311  H5   VKD  35  
VKD  H6   H6   H  0  1  N  N  N  -48.144  73.054   7.470  -9.169   2.114  -0.276  H6   VKD  36  
VKD  H7   H7   H  0  1  N  N  N  -51.740  73.895   9.343  -7.546   0.210  -0.321  H7   VKD  37  
VKD  H9   H9   H  0  1  N  N  N  -52.377  75.218   9.935  -4.134  -0.137   1.507  H9   VKD  38  
VKD  H10  H10  H  0  1  N  N  N  -51.201  76.410  10.585  -4.340  -1.356   0.175  H10  VKD  39  
VKD  H11  H11  H  0  1  N  N  N  -54.737  79.779  13.758   1.564  -1.330   1.097  H11  VKD  40  
VKD  H12  H12  H  0  1  N  N  N  -54.440  81.689  15.260   3.542  -0.112   1.908  H12  VKD  41  
VKD  H13  H13  H  0  1  N  N  N  -55.292  84.342  12.010   4.351   1.239  -2.057  H13  VKD  42  
VKD  H14  H14  H  0  1  N  N  N  -53.957  75.460  10.795  -3.040  -1.849   1.155  H14  VKD  43  
VKD  H15  H15  H  0  1  N  N  N  -55.089  74.722  12.849  -2.336  -4.058   1.957  H15  VKD  44  
VKD  H16  H16  H  0  1  N  N  N  -51.091  78.285   8.108  -3.477   1.945  -1.469  H16  VKD  45  
VKD  H17  H17  H  0  1  N  N  N  -52.246  77.383   7.070  -3.513   2.238   0.325  H17  VKD  46  
VKD  H18  H18  H  0  1  N  N  N  -52.602  75.043   7.383  -5.658   1.650   1.425  H18  VKD  47  
VKD  H19  H19  H  0  1  N  N  N  -49.896  72.336   9.112  -7.856   1.361   2.375  H19  VKD  48  
VKD  H20  H20  H  0  1  N  N  N  -49.421  74.064   9.241  -9.077   0.400   1.507  H20  VKD  49  
VKD  H21  H21  H  0  1  N  N  N  -55.654  79.948  10.225   0.507  -1.429  -2.354  H21  VKD  50  
VKD  H22  H22  H  0  1  N  N  N  -49.585  77.058   9.183  -4.746  -0.266  -2.142  H22  VKD  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VKD  C25  C26  SING  N  N   1  
VKD  C25  C24  SING  N  N   2  
VKD  C26  C27  SING  N  N   3  
VKD  C27  C28  SING  N  N   4  
VKD  C24  N29  SING  N  N   5  
VKD  C24  C22  SING  N  N   6  
VKD  C21  C22  SING  N  N   7  
VKD  C21  N20  SING  N  N   8  
VKD  N29  C28  SING  N  N   9  
VKD  C22  O23  SING  N  N  10  
VKD  C22  C30  SING  N  N  11  
VKD  O01  C02  DOUB  N  N  12  
VKD  N20  C02  SING  N  N  13  
VKD  N20  C30  SING  N  N  14  
VKD  C02  C03  SING  N  N  15  
VKD  F19  C18  SING  N  N  16  
VKD  C03  C04  DOUB  Y  N  17  
VKD  C03  C10  SING  Y  N  18  
VKD  N11  C10  SING  N  N  19  
VKD  N11  C12  SING  N  N  20  
VKD  C04  C05  SING  Y  N  21  
VKD  C18  C12  DOUB  Y  N  22  
VKD  C18  C17  SING  Y  N  23  
VKD  C10  C08  DOUB  Y  N  24  
VKD  C12  C13  SING  Y  N  25  
VKD  C17  C15  DOUB  Y  N  26  
VKD  C05  C06  DOUB  Y  N  27  
VKD  C08  C06  SING  Y  N  28  
VKD  C08  F09  SING  N  N  29  
VKD  C06  F07  SING  N  N  30  
VKD  C13  C14  DOUB  Y  N  31  
VKD  C15  C14  SING  Y  N  32  
VKD  C15  I16  SING  N  N  33  
VKD  C25  H1   SING  N  N  34  
VKD  C25  H2   SING  N  N  35  
VKD  C26  H3   SING  N  N  36  
VKD  C26  H4   SING  N  N  37  
VKD  C27  H5   SING  N  N  38  
VKD  C27  H6   SING  N  N  39  
VKD  N29  H7   SING  N  N  40  
VKD  C30  H9   SING  N  N  41  
VKD  C30  H10  SING  N  N  42  
VKD  C13  H11  SING  N  N  43  
VKD  C14  H12  SING  N  N  44  
VKD  C17  H13  SING  N  N  45  
VKD  C04  H14  SING  N  N  46  
VKD  C05  H15  SING  N  N  47  
VKD  C21  H16  SING  N  N  48  
VKD  C21  H17  SING  N  N  49  
VKD  C24  H18  SING  N  N  50  
VKD  C28  H19  SING  N  N  51  
VKD  C28  H20  SING  N  N  52  
VKD  N11  H21  SING  N  N  53  
VKD  O23  H22  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VKD  SMILES            ACDLabs               12.01  "C1CCCNC1C4(CN(C(c2c(c(c(cc2)F)F)Nc3ccc(I)cc3F)=O)C4)O"  
VKD  InChI             InChI                 1.03   "InChI=1S/C21H21F3IN3O2/c22-14-6-5-13(19(18(14)24)27-16-7-4-12(25)9-15(16)23)20(29)28-10-21(30,11-28)17-3-1-2-8-26-17/h4-7,9,17,26-27,30H,1-3,8,10-11H2/t17-/m1/s1"  
VKD  InChIKey          InChI                 1.03   BSMCAPRUBJMWDF-QGZVFWFLSA-N  
VKD  SMILES_CANONICAL  CACTVS                3.385  "OC1(CN(C1)C(=O)c2ccc(F)c(F)c2Nc3ccc(I)cc3F)[C@H]4CCCCN4"  
VKD  SMILES            CACTVS                3.385  "OC1(CN(C1)C(=O)c2ccc(F)c(F)c2Nc3ccc(I)cc3F)[CH]4CCCCN4"  
VKD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1I)F)Nc2c(ccc(c2F)F)C(=O)N3CC(C3)([C@H]4CCCCN4)O"  
VKD  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1I)F)Nc2c(ccc(c2F)F)C(=O)N3CC(C3)(C4CCCCN4)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VKD  "SYSTEMATIC NAME"  ACDLabs               12.01  "{3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]phenyl}{3-hydroxy-3-[(2R)-piperidin-2-yl]azetidin-1-yl}methanone"  
VKD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[3,4-bis(fluoranyl)-2-[(2-fluoranyl-4-iodanyl-phenyl)amino]phenyl]-[3-oxidanyl-3-[(2~{R})-piperidin-2-yl]azetidin-1-yl]methanone"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VKD  "Create component"  2020-08-21  RCSB  
VKD  "Initial release"   2020-09-30  RCSB  
VKD  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VKD
_pdbx_chem_comp_synonyms.name        "{3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]phenyl}{3-hydroxy-3-[(2R)-piperidin-2-yl]azetidin-1-yl}methanone"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
