data_VBD
#

_chem_comp.id                                   VBD
_chem_comp.name                                 "(7S)-8-(cyclopropylmethyl)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-7-methyl-5-(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H19 F2 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-22
_chem_comp.pdbx_modified_date                   2021-02-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       399.394
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VBD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VXU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VBD  C4   C1   C  0  1  Y  N  N  -22.907  -54.265  33.180  -4.443  -0.715   0.757  C4   VBD   1  
VBD  C14  C2   C  0  1  N  N  N  -30.195  -58.851  35.458   2.474  -3.162  -1.296  C14  VBD   2  
VBD  C5   C3   C  0  1  Y  N  N  -22.166  -53.230  33.723  -5.496  -0.032   0.164  C5   VBD   3  
VBD  C6   C4   C  0  1  Y  N  N  -22.460  -52.829  35.015  -5.262   1.168  -0.494  C6   VBD   4  
VBD  C11  C5   C  0  1  N  N  N  -28.865  -59.582  33.551   3.844  -1.400  -0.283  C11  VBD   5  
VBD  C7   C6   C  0  1  Y  N  N  -26.124  -55.993  35.591  -0.548   0.670  -0.201  C7   VBD   6  
VBD  C8   C7   C  0  1  Y  N  N  -28.101  -57.005  36.116   0.234  -1.467  -0.584  C8   VBD   7  
VBD  C9   C8   C  0  1  Y  N  N  -28.010  -57.796  34.970   1.528  -0.984  -0.531  C9   VBD   8  
VBD  C10  C9   C  0  1  Y  N  N  -26.885  -57.599  34.141   1.734   0.382  -0.306  C10  VBD   9  
VBD  C12  C10  C  0  1  N  N  S  -27.579  -59.535  32.752   3.963  -0.042   0.358  C12  VBD  10  
VBD  C13  C11  C  0  1  N  N  N  -26.783  -60.817  32.904   3.659  -0.159   1.853  C13  VBD  11  
VBD  N1   N1   N  0  1  N  N  N  -25.205  -55.066  35.938  -1.629   1.521  -0.030  N1   VBD  12  
VBD  N2   N2   N  0  1  Y  N  N  -27.170  -56.111  36.423  -0.772  -0.617  -0.416  N2   VBD  13  
VBD  C3   C12  C  0  1  Y  N  N  -23.907  -54.889  33.882  -3.161  -0.201   0.692  C3   VBD  14  
VBD  N3   N3   N  0  1  Y  N  N  -25.942  -56.695  34.460   0.678   1.171  -0.146  N3   VBD  15  
VBD  C1   C13  C  0  1  Y  N  N  -23.454  -53.425  35.747  -3.980   1.683  -0.559  C1   VBD  16  
VBD  C2   C14  C  0  1  Y  N  N  -24.181  -54.463  35.177  -2.927   1.000   0.035  C2   VBD  17  
VBD  N4   N4   N  0  1  N  N  N  -28.992  -58.749  34.631   2.631  -1.836  -0.695  N4   VBD  18  
VBD  N5   N5   N  0  1  N  N  N  -26.726  -58.356  32.998   3.017   0.895  -0.258  N5   VBD  19  
VBD  O1   O1   O  0  1  N  N  N  -29.757  -60.359  33.237   4.827  -2.094  -0.433  O1   VBD  20  
VBD  F1   F1   F  0  1  N  N  N  -21.751  -51.822  35.569  -6.287   1.832  -1.072  F1   VBD  21  
VBD  F2   F2   F  0  1  N  N  N  -22.631  -54.670  31.923  -4.672  -1.880   1.401  F2   VBD  22  
VBD  O2   O2   O  0  1  N  N  N  -21.189  -52.636  33.008  -6.758  -0.539   0.227  O2   VBD  23  
VBD  C15  C15  C  0  1  N  N  N  -30.033  -59.760  36.596   2.190  -4.149  -0.241  C15  VBD  24  
VBD  C16  C16  C  0  1  N  N  N  -29.883  -60.503  37.494   1.963  -4.935   0.600  C16  VBD  25  
VBD  C17  C17  C  0  1  N  N  N  -25.699  -58.037  31.991   3.040   2.193   0.429  C17  VBD  26  
VBD  C18  C18  C  0  1  N  N  N  -25.734  -56.609  31.522   4.396   2.865   0.206  C18  VBD  27  
VBD  C19  C19  C  0  1  N  N  N  -26.257  -56.328  30.143   4.662   4.181   0.939  C19  VBD  28  
VBD  C20  C20  C  0  1  N  N  N  -24.800  -56.202  30.420   4.413   4.182  -0.572  C20  VBD  29  
VBD  H1   H1   H  0  1  N  N  N  -30.442  -57.850  35.841   1.648  -3.143  -2.008  H1   VBD  30  
VBD  H2   H2   H  0  1  N  N  N  -31.021  -59.218  34.831   3.393  -3.438  -1.813  H2   VBD  31  
VBD  H3   H3   H  0  1  N  N  N  -28.952  -57.124  36.770   0.045  -2.515  -0.759  H3   VBD  32  
VBD  H4   H4   H  0  1  N  N  N  -27.879  -59.488  31.695   4.977   0.333   0.224  H4   VBD  33  
VBD  H5   H5   H  0  1  N  N  N  -27.438  -61.680  32.716   2.643  -0.529   1.989  H5   VBD  34  
VBD  H6   H6   H  0  1  N  N  N  -25.954  -60.822  32.181   4.363  -0.851   2.314  H6   VBD  35  
VBD  H7   H7   H  0  1  N  N  N  -26.379  -60.879  33.925   3.754   0.821   2.321  H7   VBD  36  
VBD  H8   H8   H  0  1  N  N  N  -25.259  -54.757  36.888  -1.487   2.478   0.045  H8   VBD  37  
VBD  H9   H9   H  0  1  N  N  N  -24.471  -55.696  33.437  -2.342  -0.732   1.154  H9   VBD  38  
VBD  H10  H10  H  0  1  N  N  N  -23.669  -53.093  36.752  -3.798   2.616  -1.071  H10  VBD  39  
VBD  H11  H11  H  0  1  N  N  N  -20.786  -51.952  33.529  -7.261  -0.245   0.999  H11  VBD  40  
VBD  H12  H12  H  0  1  N  N  N  -29.748  -61.173  38.304   1.760  -5.639   1.353  H12  VBD  41  
VBD  H13  H13  H  0  1  N  N  N  -25.851  -58.692  31.121   2.250   2.829   0.030  H13  VBD  42  
VBD  H14  H14  H  0  1  N  N  N  -24.710  -58.234  32.430   2.880   2.043   1.496  H14  VBD  43  
VBD  H15  H15  H  0  1  N  N  N  -25.945  -55.849  32.289   5.239   2.188   0.067  H15  VBD  44  
VBD  H16  H16  H  0  1  N  N  N  -26.861  -55.427  29.957   3.870   4.569   1.580  H16  VBD  45  
VBD  H17  H17  H  0  1  N  N  N  -26.628  -57.153  29.517   5.679   4.370   1.282  H17  VBD  46  
VBD  H18  H18  H  0  1  N  N  N  -24.096  -56.934  29.999   5.267   4.372  -1.222  H18  VBD  47  
VBD  H19  H19  H  0  1  N  N  N  -24.328  -55.208  30.439   3.458   4.571  -0.924  H19  VBD  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VBD  C19  C20  SING  N  N   1  
VBD  C19  C18  SING  N  N   2  
VBD  C20  C18  SING  N  N   3  
VBD  C18  C17  SING  N  N   4  
VBD  F2   C4   SING  N  N   5  
VBD  C17  N5   SING  N  N   6  
VBD  C12  C13  SING  N  N   7  
VBD  C12  N5   SING  N  N   8  
VBD  C12  C11  SING  N  N   9  
VBD  N5   C10  SING  N  N  10  
VBD  O2   C5   SING  N  N  11  
VBD  C4   C5   DOUB  Y  N  12  
VBD  C4   C3   SING  Y  N  13  
VBD  O1   C11  DOUB  N  N  14  
VBD  C11  N4   SING  N  N  15  
VBD  C5   C6   SING  Y  N  16  
VBD  C3   C2   DOUB  Y  N  17  
VBD  C10  N3   DOUB  Y  N  18  
VBD  C10  C9   SING  Y  N  19  
VBD  N3   C7   SING  Y  N  20  
VBD  N4   C9   SING  N  N  21  
VBD  N4   C14  SING  N  N  22  
VBD  C9   C8   DOUB  Y  N  23  
VBD  C6   F1   SING  N  N  24  
VBD  C6   C1   DOUB  Y  N  25  
VBD  C2   C1   SING  Y  N  26  
VBD  C2   N1   SING  N  N  27  
VBD  C14  C15  SING  N  N  28  
VBD  C7   N1   SING  N  N  29  
VBD  C7   N2   DOUB  Y  N  30  
VBD  C8   N2   SING  Y  N  31  
VBD  C15  C16  TRIP  N  N  32  
VBD  C14  H1   SING  N  N  33  
VBD  C14  H2   SING  N  N  34  
VBD  C8   H3   SING  N  N  35  
VBD  C12  H4   SING  N  N  36  
VBD  C13  H5   SING  N  N  37  
VBD  C13  H6   SING  N  N  38  
VBD  C13  H7   SING  N  N  39  
VBD  N1   H8   SING  N  N  40  
VBD  C3   H9   SING  N  N  41  
VBD  C1   H10  SING  N  N  42  
VBD  O2   H11  SING  N  N  43  
VBD  C16  H12  SING  N  N  44  
VBD  C17  H13  SING  N  N  45  
VBD  C17  H14  SING  N  N  46  
VBD  C18  H15  SING  N  N  47  
VBD  C19  H16  SING  N  N  48  
VBD  C19  H17  SING  N  N  49  
VBD  C20  H18  SING  N  N  50  
VBD  C20  H19  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VBD  SMILES            ACDLabs               12.01  "c4(c(c(F)cc(Nc1ncc2c(n1)N(C(C(N2CC#C)=O)C)CC3CC3)c4)O)F"  
VBD  InChI             InChI                 1.03   "InChI=1S/C20H19F2N5O2/c1-3-6-26-16-9-23-20(24-13-7-14(21)17(28)15(22)8-13)25-18(16)27(10-12-4-5-12)11(2)19(26)29/h1,7-9,11-12,28H,4-6,10H2,2H3,(H,23,24,25)/t11-/m0/s1"  
VBD  InChIKey          InChI                 1.03   VCABIQKTZQAYKL-NSHDSACASA-N  
VBD  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1N(CC2CC2)c3nc(Nc4cc(F)c(O)c(F)c4)ncc3N(CC#C)C1=O"  
VBD  SMILES            CACTVS                3.385  "C[CH]1N(CC2CC2)c3nc(Nc4cc(F)c(O)c(F)c4)ncc3N(CC#C)C1=O"  
VBD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1C(=O)N(c2cnc(nc2N1CC3CC3)Nc4cc(c(c(c4)F)O)F)CC#C"  
VBD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(=O)N(c2cnc(nc2N1CC3CC3)Nc4cc(c(c(c4)F)O)F)CC#C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VBD  "SYSTEMATIC NAME"  ACDLabs               12.01  "(7S)-8-(cyclopropylmethyl)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-7-methyl-5-(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one"  
VBD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(7~{S})-2-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]amino]-8-(cyclopropylmethyl)-7-methyl-5-prop-2-ynyl-7~{H}-pteridin-6-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VBD  "Create component"  2020-07-22  RCSB  
VBD  "Initial release"   2021-03-03  RCSB  
##
