data_U9D
#

_chem_comp.id                                   U9D
_chem_comp.name                                 "4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C9 H18 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-05-05
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       206.236
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U9D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U9D  C4    C4    C  0  1  N  N  N  31.759  7.524  38.679  -0.257   1.310  -0.302  C4    U9D   1  
U9D  C5    C5    C  0  1  N  N  S  32.395  6.958  40.044  -1.286   0.272   0.154  C5    U9D   2  
U9D  O5    O5    O  0  1  N  N  N  31.335  6.777  41.075  -0.936  -1.008  -0.377  O5    U9D   3  
U9D  C6    C6    C  0  1  N  N  N  33.485  7.914  40.587  -2.673   0.672  -0.351  C6    U9D   4  
U9D  O6    O6    O  0  1  N  N  N  34.113  7.253  41.686  -3.649  -0.232   0.171  O6    U9D   5  
U9D  C6M   C6M   C  0  1  N  N  N       ?      ?       ?  -4.986   0.054  -0.243  C6M   U9D   6  
U9D  C3    C3    C  0  1  N  N  S  30.671  6.547  38.203   1.137   0.872   0.156  C3    U9D   7  
U9D  O3    O3    O  0  1  N  N  N  30.108  7.021  37.007   2.112   1.797  -0.328  O3    U9D   8  
U9D  C3M   C3M   C  0  1  N  N  N  29.818  5.913  35.868   2.375   2.884   0.563  C3M   U9D   9  
U9D  C2    C2    C  0  1  N  N  R  29.578  6.376  39.350   1.432  -0.523  -0.404  C2    U9D  10  
U9D  O2    O2    O  0  1  N  N  N  28.565  5.520  38.969   2.700  -0.973   0.076  O2    U9D  11  
U9D  C2M   C2M   C  0  1  N  N  N  27.194  6.096  38.534   3.383  -1.852  -0.820  C2M   U9D  12  
U9D  C1    C1    C  0  1  N  N  S  30.237  5.858  40.658   0.338  -1.490   0.056  C1    U9D  13  
U9D  O1    O1    O  0  1  N  N  N  29.621  4.514  41.063   0.353  -1.584   1.482  O1    U9D  14  
U9D  H101  H101  H  0  0  N  N  N  31.315  8.514  38.860  -0.276   1.388  -1.389  H101  U9D  15  
U9D  H102  H102  H  0  0  N  N  N  32.543  7.608  37.912  -0.498   2.278   0.138  H102  U9D  16  
U9D  H11   H11   H  0  1  N  N  N  32.859  5.986  39.823  -1.295   0.223   1.243  H11   U9D  17  
U9D  H131  H131  H  0  0  N  N  N  34.225  8.127  39.802  -2.902   1.685  -0.020  H131  U9D  18  
U9D  H132  H132  H  0  0  N  N  N  33.027  8.856  40.925  -2.688   0.633  -1.441  H132  U9D  19  
U9D  H151  H151  H  0  0  N  N  N       ?      ?       ?  -5.049   0.003  -1.330  H151  U9D  20  
U9D  H152  H152  H  0  0  N  N  N       ?      ?       ?  -5.667  -0.676   0.195  H152  U9D  21  
U9D  H153  H153  H  0  0  N  N  N       ?      ?       ?  -5.264   1.054   0.090  H153  U9D  22  
U9D  H16   H16   H  0  1  N  N  N  31.137  5.565  38.038   1.171   0.843   1.245  H16   U9D  23  
U9D  H181  H181  H  0  0  N  N  N  29.380  6.401  34.984   1.456   3.445   0.733  H181  U9D  24  
U9D  H182  H182  H  0  0  N  N  N  30.761  5.422  35.586   2.744   2.495   1.512  H182  U9D  25  
U9D  H183  H183  H  0  0  N  N  N  29.115  5.162  36.258   3.125   3.541   0.123  H183  U9D  26  
U9D  H19   H19   H  0  1  N  N  N  29.166  7.375  39.558   1.449  -0.482  -1.493  H19   U9D  27  
U9D  H1B1  H1B1  H  0  0  N  N  N  26.517  5.271  38.268   2.772  -2.738  -0.995  H1B1  U9D  28  
U9D  H1B2  H1B2  H  0  0  N  N  N  26.759  6.674  39.363   3.560  -1.340  -1.766  H1B2  U9D  29  
U9D  H1B3  H1B3  H  0  0  N  N  N  27.332  6.753  37.662   4.336  -2.148  -0.382  H1B3  U9D  30  
U9D  H1C   H1C   H  0  1  N  N  N  29.508  6.407  41.273   0.519  -2.475  -0.375  H1C   U9D  31  
U9D  H2    H2    H  0  1  N  Y  N  28.899  4.308  40.481  -0.316  -2.181   1.844  H2    U9D  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U9D  C4   C5    SING  N  N   1  
U9D  C4   C3    SING  N  N   2  
U9D  C4   H101  SING  N  N   3  
U9D  C4   H102  SING  N  N   4  
U9D  C5   O5    SING  N  N   5  
U9D  C5   C6    SING  N  N   6  
U9D  C5   H11   SING  N  N   7  
U9D  O5   C1    SING  N  N   8  
U9D  C6   O6    SING  N  N   9  
U9D  C6   H131  SING  N  N  10  
U9D  C6   H132  SING  N  N  11  
U9D  O6   C6M   SING  N  N  12  
U9D  C6M  H151  SING  N  N  13  
U9D  C6M  H152  SING  N  N  14  
U9D  C6M  H153  SING  N  N  15  
U9D  C3   O3    SING  N  N  16  
U9D  C3   C2    SING  N  N  17  
U9D  C3   H16   SING  N  N  18  
U9D  O3   C3M   SING  N  N  19  
U9D  C3M  H181  SING  N  N  20  
U9D  C3M  H182  SING  N  N  21  
U9D  C3M  H183  SING  N  N  22  
U9D  C2   O2    SING  N  N  23  
U9D  C2   C1    SING  N  N  24  
U9D  C2   H19   SING  N  N  25  
U9D  O2   C2M   SING  N  N  26  
U9D  C2M  H1B1  SING  N  N  27  
U9D  C2M  H1B2  SING  N  N  28  
U9D  C2M  H1B3  SING  N  N  29  
U9D  C1   O1    SING  N  N  30  
U9D  C1   H1C   SING  N  N  31  
U9D  O1   H2    SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U9D  SMILES            ACDLabs               12.01  "C1C(OC(C(C1OC)OC)O)COC"  
U9D  InChI             InChI                 1.03   "InChI=1S/C9H18O5/c1-11-5-6-4-7(12-2)8(13-3)9(10)14-6/h6-10H,4-5H2,1-3H3/t6-,7-,8+,9?/m0/s1"  
U9D  InChIKey          InChI                 1.03   VGIKFUPOZBZSKX-VTBDLZGYSA-N  
U9D  SMILES_CANONICAL  CACTVS                3.385  "COC[C@@H]1C[C@H](OC)[C@@H](OC)[C@@H](O)O1"  
U9D  SMILES            CACTVS                3.385  "COC[CH]1C[CH](OC)[CH](OC)[CH](O)O1"  
U9D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COC[C@@H]1C[C@@H]([C@H](C(O1)O)OC)OC"  
U9D  SMILES            "OpenEye OEToolkits"  2.0.7  "COCC1CC(C(C(O1)O)OC)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U9D  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose"  
U9D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{R},4~{S},6~{S})-3,4-dimethoxy-6-(methoxymethyl)oxan-2-ol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
U9D  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
U9D  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
U9D  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
U9D  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U9D  "Create component"  2020-05-05  RCSB  
U9D  "Initial release"   2020-07-29  RCSB  
##
