data_Q9D
# 
_chem_comp.id                                    Q9D 
_chem_comp.name                                  "benzyl [(2S)-1-(3-nitrophenyl)-3-oxobutan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H18 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-10-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        342.346 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Q9D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6UKD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Q9D C22 C1  C 0  1 Y N N N N N -27.853 -9.932  13.159 -3.157 -2.415 0.918  C22 Q9D 1  
Q9D C24 C2  C 0  1 Y N N N N N -26.324 -10.187 14.978 -1.846 -0.640 1.845  C24 Q9D 2  
Q9D C28 C3  C 0  1 N N N N N N -23.230 -15.580 11.749 3.162  0.058  -1.158 C28 Q9D 3  
Q9D C02 C4  C 0  1 N N N N N N -23.928 -14.066 13.387 1.092  1.014  -0.452 C02 Q9D 4  
Q9D C04 C5  C 0  1 N N S N N N -24.515 -12.707 15.430 -1.050 2.037  0.098  C04 Q9D 5  
Q9D C05 C6  C 0  1 N N N N N N -25.860 -12.407 16.070 -2.157 1.733  1.110  C05 Q9D 6  
Q9D C06 C7  C 0  1 Y N N N N N -26.592 -11.550 15.036 -2.510 0.270  1.043  C06 Q9D 7  
Q9D C07 C8  C 0  1 Y N N N N N -27.484 -12.117 14.144 -3.499 -0.163 0.180  C07 Q9D 8  
Q9D C08 C9  C 0  1 Y N N N N N -28.117 -11.291 13.215 -3.822 -1.506 0.117  C08 Q9D 9  
Q9D C23 C10 C 0  1 Y N N N N N -26.954 -9.370  14.050 -2.169 -1.982 1.782  C23 Q9D 10 
Q9D C25 C11 C 0  1 N N N N N N -23.487 -13.046 16.490 -0.782 3.520  0.078  C25 Q9D 11 
Q9D C29 C12 C 0  1 Y N N N N N -23.908 -16.685 10.958 4.347  -0.671 -0.579 C29 Q9D 12 
Q9D C30 C13 C 0  1 Y N N N N N -24.196 -16.497 9.629  5.437  0.041  -0.115 C30 Q9D 13 
Q9D C31 C14 C 0  1 Y N N N N N -24.834 -17.512 8.898  6.522  -0.627 0.421  C31 Q9D 14 
Q9D C32 C15 C 0  1 Y N N N N N -25.174 -18.699 9.516  6.516  -2.008 0.494  C32 Q9D 15 
Q9D C33 C16 C 0  1 Y N N N N N -24.886 -18.871 10.864 5.426  -2.720 0.030  C33 Q9D 16 
Q9D C34 C17 C 0  1 Y N N N N N -24.266 -17.868 11.587 4.341  -2.051 -0.507 C34 Q9D 17 
Q9D C56 C18 C 0  1 N N N N N N -23.337 -14.494 16.923 -1.752 4.452  -0.601 C56 Q9D 18 
Q9D N03 N1  N 0  1 N N N N N N -24.723 -13.851 14.554 0.171  1.325  0.482  N03 Q9D 19 
Q9D N09 N2  N 1  1 N N N N N N -29.065 -11.853 12.275 -4.880 -1.970 -0.809 N09 Q9D 20 
Q9D O01 O1  O 0  1 N N N N N N -23.145 -13.277 12.972 0.909  1.325  -1.612 O01 Q9D 21 
Q9D O27 O2  O 0  1 N N N N N N -24.142 -15.283 12.763 2.215  0.360  -0.099 O27 Q9D 22 
Q9D O41 O3  O 0  1 N N N N N N -29.376 -13.223 12.349 -5.164 -3.153 -0.865 O41 Q9D 23 
Q9D O47 O4  O -1 1 N N N N N N -29.649 -11.022 11.301 -5.466 -1.169 -1.515 O47 Q9D 24 
Q9D O52 O5  O 0  1 N N N N N N -22.839 -12.191 16.992 0.211  3.961  0.605  O52 Q9D 25 
Q9D H1  H1  H 0  1 N N N N N N -28.346 -9.314  12.424 -3.413 -3.464 0.872  H1  Q9D 26 
Q9D H2  H2  H 0  1 N N N N N N -25.613 -9.756  15.667 -1.074 -0.301 2.520  H2  Q9D 27 
Q9D H3  H3  H 0  1 N N N N N N -22.276 -15.930 12.171 3.497  0.986  -1.621 H3  Q9D 28 
Q9D H4  H4  H 0  1 N N N N N N -23.050 -14.699 11.115 2.681  -0.569 -1.908 H4  Q9D 29 
Q9D H5  H5  H 0  1 N N N N N N -24.178 -11.834 14.852 -1.365 1.711  -0.893 H5  Q9D 30 
Q9D H6  H6  H 0  1 N N N N N N -25.728 -11.853 17.011 -1.808 1.977  2.114  H6  Q9D 31 
Q9D H7  H7  H 0  1 N N N N N N -26.413 -13.337 16.266 -3.037 2.331  0.876  H7  Q9D 32 
Q9D H8  H8  H 0  1 N N N N N N -27.686 -13.178 14.166 -4.018 0.547  -0.447 H8  Q9D 33 
Q9D H9  H9  H 0  1 N N N N N N -26.746 -8.311  14.023 -1.650 -2.692 2.409  H9  Q9D 34 
Q9D H10 H10 H 0  1 N N N N N N -23.932 -15.568 9.146  5.441  1.120  -0.171 H10 Q9D 35 
Q9D H11 H11 H 0  1 N N N N N N -25.059 -17.364 7.852  7.374  -0.071 0.784  H11 Q9D 36 
Q9D H12 H12 H 0  1 N N N N N N -25.659 -19.486 8.957  7.364  -2.530 0.912  H12 Q9D 37 
Q9D H13 H13 H 0  1 N N N N N N -25.149 -19.798 11.353 5.421  -3.798 0.087  H13 Q9D 38 
Q9D H14 H14 H 0  1 N N N N N N -24.061 -18.006 12.638 3.488  -2.607 -0.865 H14 Q9D 39 
Q9D H15 H15 H 0  1 N N N N N N -22.578 -14.563 17.717 -2.579 3.876  -1.016 H15 Q9D 40 
Q9D H16 H16 H 0  1 N N N N N N -24.300 -14.864 17.303 -2.136 5.168  0.124  H16 Q9D 41 
Q9D H17 H17 H 0  1 N N N N N N -23.024 -15.103 16.062 -1.242 4.985  -1.404 H17 Q9D 42 
Q9D H18 H18 H 0  1 N N N N N N -25.445 -14.507 14.776 0.318  1.077  1.408  H18 Q9D 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Q9D C31 C32 DOUB Y N 1  
Q9D C31 C30 SING Y N 2  
Q9D C32 C33 SING Y N 3  
Q9D C30 C29 DOUB Y N 4  
Q9D C33 C34 DOUB Y N 5  
Q9D C29 C34 SING Y N 6  
Q9D C29 C28 SING N N 7  
Q9D O47 N09 SING N N 8  
Q9D C28 O27 SING N N 9  
Q9D N09 O41 DOUB N N 10 
Q9D N09 C08 SING N N 11 
Q9D O27 C02 SING N N 12 
Q9D O01 C02 DOUB N N 13 
Q9D C22 C08 DOUB Y N 14 
Q9D C22 C23 SING Y N 15 
Q9D C08 C07 SING Y N 16 
Q9D C02 N03 SING N N 17 
Q9D C23 C24 DOUB Y N 18 
Q9D C07 C06 DOUB Y N 19 
Q9D N03 C04 SING N N 20 
Q9D C24 C06 SING Y N 21 
Q9D C06 C05 SING N N 22 
Q9D C04 C05 SING N N 23 
Q9D C04 C25 SING N N 24 
Q9D C25 C56 SING N N 25 
Q9D C25 O52 DOUB N N 26 
Q9D C22 H1  SING N N 27 
Q9D C24 H2  SING N N 28 
Q9D C28 H3  SING N N 29 
Q9D C28 H4  SING N N 30 
Q9D C04 H5  SING N N 31 
Q9D C05 H6  SING N N 32 
Q9D C05 H7  SING N N 33 
Q9D C07 H8  SING N N 34 
Q9D C23 H9  SING N N 35 
Q9D C30 H10 SING N N 36 
Q9D C31 H11 SING N N 37 
Q9D C32 H12 SING N N 38 
Q9D C33 H13 SING N N 39 
Q9D C34 H14 SING N N 40 
Q9D C56 H15 SING N N 41 
Q9D C56 H16 SING N N 42 
Q9D C56 H17 SING N N 43 
Q9D N03 H18 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Q9D SMILES           ACDLabs              12.01 "c1c(cc(cc1)CC(C(C)=O)NC(=O)OCc2ccccc2)[N+](=O)[O-]"                                                                                      
Q9D InChI            InChI                1.03  "InChI=1S/C18H18N2O5/c1-13(21)17(11-15-8-5-9-16(10-15)20(23)24)19-18(22)25-12-14-6-3-2-4-7-14/h2-10,17H,11-12H2,1H3,(H,19,22)/t17-/m0/s1" 
Q9D InChIKey         InChI                1.03  XMNMBBOQTUQLRM-KRWDZBQOSA-N                                                                                                               
Q9D SMILES_CANONICAL CACTVS               3.385 "CC(=O)[C@H](Cc1cccc(c1)[N+]([O-])=O)NC(=O)OCc2ccccc2"                                                                                    
Q9D SMILES           CACTVS               3.385 "CC(=O)[CH](Cc1cccc(c1)[N+]([O-])=O)NC(=O)OCc2ccccc2"                                                                                     
Q9D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)[C@H](Cc1cccc(c1)[N+](=O)[O-])NC(=O)OCc2ccccc2"                                                                                    
Q9D SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)C(Cc1cccc(c1)[N+](=O)[O-])NC(=O)OCc2ccccc2"                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Q9D "SYSTEMATIC NAME" ACDLabs              12.01 "benzyl [(2S)-1-(3-nitrophenyl)-3-oxobutan-2-yl]carbamate"                            
Q9D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-1-(3-nitrophenyl)-3-oxidanylidene-butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Q9D "Create component" 2019-10-07 RCSB 
Q9D "Initial release"  2020-09-09 RCSB 
Q9D "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Q9D 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C56 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
