data_Q5D
#

_chem_comp.id                                   Q5D
_chem_comp.name                                 "4-cyano-N-cyclopropyl-N-[(thiophen-2-yl)methyl]benzamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H14 N2 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-09-23
_chem_comp.pdbx_modified_date                   2019-11-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       282.360
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Q5D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6UE6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q5D  C4   C1   C  0  1  Y  N  N  34.928  60.923  105.663  -3.588  -0.202  -0.000  C4   Q5D   1  
Q5D  C5   C2   C  0  1  N  N  N  35.819  60.831  106.794  -4.859  -0.860  -0.014  C5   Q5D   2  
Q5D  C6   C3   C  0  1  Y  N  N  33.585  60.563  105.794  -2.414  -0.948  -0.127  C6   Q5D   3  
Q5D  N1   N1   N  0  1  N  N  N  32.206  61.729  101.316   1.244   1.189  -0.586  N1   Q5D   4  
Q5D  C7   C4   C  0  1  Y  N  N  32.751  60.564  104.686  -1.191  -0.315  -0.114  C7   Q5D   5  
Q5D  C8   C5   C  0  1  N  N  N  32.724  63.101  101.539   2.539   1.873  -0.597  C8   Q5D   6  
Q5D  C9   C6   C  0  1  N  N  N  32.328  63.961  102.692   3.100   2.347   0.746  C9   Q5D   7  
Q5D  C10  C7   C  0  1  N  N  N  31.840  64.283  101.314   2.553   3.365  -0.257  C10  Q5D   8  
Q5D  C11  C8   C  0  1  N  N  N  31.504  61.463  100.067   1.096  -0.109  -1.249  C11  Q5D   9  
Q5D  C12  C9   C  0  1  Y  N  N  32.396  60.990   98.956   1.553  -1.203  -0.319  C12  Q5D  10  
Q5D  C13  C10  C  0  1  Y  N  N  32.412  61.420   97.653   1.496  -1.155   1.013  C13  Q5D  11  
Q5D  C14  C11  C  0  1  Y  N  N  33.375  60.678   96.873   1.969  -2.284   1.658  C14  Q5D  12  
Q5D  C15  C12  C  0  1  Y  N  N  34.044  59.732   97.568   2.411  -3.249   0.851  C15  Q5D  13  
Q5D  N    N2   N  0  1  N  N  N  36.519  60.728  107.690  -5.868  -1.382  -0.025  N    Q5D  14  
Q5D  C3   C13  C  0  1  Y  N  N  35.416  61.312  104.415  -3.521   1.187   0.134  C3   Q5D  15  
Q5D  C2   C14  C  0  1  Y  N  N  34.581  61.299  103.309  -2.298   1.820   0.141  C2   Q5D  16  
Q5D  C1   C15  C  0  1  Y  N  N  33.240  60.907  103.424  -1.124   1.073   0.027  C1   Q5D  17  
Q5D  C    C16  C  0  1  N  N  N  32.369  60.716  102.218   0.189   1.753   0.035  C    Q5D  18  
Q5D  O    O1   O  0  1  N  N  N  31.772  59.664  102.093   0.317   2.821   0.601  O    Q5D  19  
Q5D  S    S1   S  0  1  Y  N  N  33.551  59.696   99.188   2.236  -2.743  -0.825  S    Q5D  20  
Q5D  H1   H1   H  0  1  N  N  N  33.195  60.283  106.761  -2.465  -2.021  -0.235  H1   Q5D  21  
Q5D  H2   H2   H  0  1  N  N  N  31.711  60.296  104.801  -0.283  -0.891  -0.212  H2   Q5D  22  
Q5D  H3   H3   H  0  1  N  N  N  33.762  63.249  101.206   3.251   1.520  -1.343  H3   Q5D  23  
Q5D  H4   H4   H  0  1  N  N  N  33.073  64.608  103.177   2.505   2.149   1.637  H4   Q5D  24  
Q5D  H5   H5   H  0  1  N  N  N  31.627  63.578  103.448   4.181   2.305   0.883  H5   Q5D  25  
Q5D  H6   H6   H  0  1  N  N  N  32.227  65.167  100.786   3.274   3.994  -0.779  H6   Q5D  26  
Q5D  H7   H7   H  0  1  N  N  N  30.780  64.137  101.057   1.598   3.837  -0.024  H7   Q5D  27  
Q5D  H8   H8   H  0  1  N  N  N  31.010  62.391   99.743   0.049  -0.266  -1.509  H8   Q5D  28  
Q5D  H9   H9   H  0  1  N  N  N  30.745  60.689  100.255   1.701  -0.125  -2.155  H9   Q5D  29  
Q5D  H10  H10  H  0  1  N  N  N  31.787  62.209   97.262   1.110  -0.299   1.547  H10  Q5D  30  
Q5D  H11  H11  H  0  1  N  N  N  33.546  60.864   95.823   1.981  -2.376   2.734  H11  Q5D  31  
Q5D  H12  H12  H  0  1  N  N  N  34.796  59.083   97.145   2.815  -4.197   1.176  H12  Q5D  32  
Q5D  H13  H13  H  0  1  N  N  N  36.445  61.623  104.311  -4.429   1.764   0.232  H13  Q5D  33  
Q5D  H14  H14  H  0  1  N  N  N  34.969  61.595  102.345  -2.247   2.894   0.250  H14  Q5D  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q5D  C14  C15  DOUB  Y  N   1  
Q5D  C14  C13  SING  Y  N   2  
Q5D  C15  S    SING  Y  N   3  
Q5D  C13  C12  DOUB  Y  N   4  
Q5D  C12  S    SING  Y  N   5  
Q5D  C12  C11  SING  N  N   6  
Q5D  C11  N1   SING  N  N   7  
Q5D  C10  C8   SING  N  N   8  
Q5D  C10  C9   SING  N  N   9  
Q5D  N1   C8   SING  N  N  10  
Q5D  N1   C    SING  N  N  11  
Q5D  C8   C9   SING  N  N  12  
Q5D  O    C    DOUB  N  N  13  
Q5D  C    C1   SING  N  N  14  
Q5D  C2   C1   DOUB  Y  N  15  
Q5D  C2   C3   SING  Y  N  16  
Q5D  C1   C7   SING  Y  N  17  
Q5D  C3   C4   DOUB  Y  N  18  
Q5D  C7   C6   DOUB  Y  N  19  
Q5D  C4   C6   SING  Y  N  20  
Q5D  C4   C5   SING  N  N  21  
Q5D  C5   N    TRIP  N  N  22  
Q5D  C6   H1   SING  N  N  23  
Q5D  C7   H2   SING  N  N  24  
Q5D  C8   H3   SING  N  N  25  
Q5D  C9   H4   SING  N  N  26  
Q5D  C9   H5   SING  N  N  27  
Q5D  C10  H6   SING  N  N  28  
Q5D  C10  H7   SING  N  N  29  
Q5D  C11  H8   SING  N  N  30  
Q5D  C11  H9   SING  N  N  31  
Q5D  C13  H10  SING  N  N  32  
Q5D  C14  H11  SING  N  N  33  
Q5D  C15  H12  SING  N  N  34  
Q5D  C3   H13  SING  N  N  35  
Q5D  C2   H14  SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q5D  SMILES            ACDLabs               12.01  "c1(ccc(cc1)C(N(C2CC2)Cc3sccc3)=O)C#N"  
Q5D  InChI             InChI                 1.03   "InChI=1S/C16H14N2OS/c17-10-12-3-5-13(6-4-12)16(19)18(14-7-8-14)11-15-2-1-9-20-15/h1-6,9,14H,7-8,11H2"  
Q5D  InChIKey          InChI                 1.03   WYAGGMZTARRIDX-UHFFFAOYSA-N  
Q5D  SMILES_CANONICAL  CACTVS                3.385  "O=C(N(Cc1sccc1)C2CC2)c3ccc(cc3)C#N"  
Q5D  SMILES            CACTVS                3.385  "O=C(N(Cc1sccc1)C2CC2)c3ccc(cc3)C#N"  
Q5D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(sc1)CN(C2CC2)C(=O)c3ccc(cc3)C#N"  
Q5D  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(sc1)CN(C2CC2)C(=O)c3ccc(cc3)C#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Q5D  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-cyano-N-cyclopropyl-N-[(thiophen-2-yl)methyl]benzamide"  
Q5D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-cyano-~{N}-cyclopropyl-~{N}-(thiophen-2-ylmethyl)benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q5D  "Create component"  2019-09-23  RCSB  
Q5D  "Initial release"   2019-11-13  RCSB  
##
