data_OZD
# 
_chem_comp.id                                    OZD 
_chem_comp.name                                  "6-[(2-hydroxyethyl)amino]-5-[(E)-(2-oxopropylidene)amino]pyrimidine-2,4(1H,3H)-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H12 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-07-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        240.216 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OZD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6PUG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OZD C5  C1  C 0 1 N N N N N N 4.427  63.863 163.406 2.504  -1.867 0.433  C5  OZD 1  
OZD C6  C2  C 0 1 N N N N N N 5.695  63.275 162.852 2.398  -3.393 0.493  C6  OZD 2  
OZD C1  C3  C 0 1 N N N N N N 1.791  68.518 160.188 -3.528 -0.748 0.148  C1  OZD 3  
OZD C4  C4  C 0 1 N N N N N N 2.451  64.105 161.987 1.034  0.053  0.051  C4  OZD 4  
OZD C3  C5  C 0 1 N N N N N N 1.520  64.943 161.321 -0.228 0.613  -0.224 C3  OZD 5  
OZD C2  C6  C 0 1 N N N N N N 1.292  67.093 160.440 -2.423 0.123  0.241  C2  OZD 6  
OZD N   N1  N 0 1 N N N N N N 1.999  66.235 161.084 -1.310 -0.163 -0.389 N   OZD 7  
OZD C   C7  C 0 1 N N N N N N 3.008  68.926 160.977 -4.808 -0.420 0.873  C   OZD 8  
OZD C7  C8  C 0 1 N N N N N N 0.879  62.292 161.972 1.975  2.217  0.117  C7  OZD 9  
OZD C8  C9  C 0 1 N N N N N N 0.212  64.435 160.950 -0.321 2.077  -0.325 C8  OZD 10 
OZD N1  N2  N 0 1 N N N N N N 3.669  64.539 162.365 1.185  -1.297 0.151  N1  OZD 11 
OZD N2  N3  N 0 1 N N N N N N 2.100  62.826 162.283 2.105  0.885  0.211  N2  OZD 12 
OZD N3  N4  N 0 1 N N N N N N 0.003  63.120 161.318 0.799  2.809  -0.150 N3  OZD 13 
OZD O1  O1  O 0 1 N N N N N N 6.598  64.314 162.447 2.035  -3.896 -0.794 O1  OZD 14 
OZD O2  O2  O 0 1 N N N N N N 0.581  61.134 162.265 2.959  2.914  0.268  O2  OZD 15 
OZD O3  O3  O 0 1 N N N N N N -0.674 65.063 160.382 -1.385 2.617  -0.562 O3  OZD 16 
OZD H1  H1  H 0 1 N N N N N N 4.680  64.587 164.194 2.867  -1.491 1.389  H1  OZD 17 
OZD H2  H2  H 0 1 N N N N N N 3.813  63.056 163.833 3.199  -1.583 -0.357 H2  OZD 18 
OZD H3  H3  H 0 1 N N N N N N 5.453  62.647 161.982 3.359  -3.812 0.789  H3  OZD 19 
OZD H4  H4  H 0 1 N N N N N N 6.176  62.659 163.626 1.638  -3.675 1.221  H4  OZD 20 
OZD H8  H8  H 0 1 N N N N N N 0.321  66.801 160.067 -2.493 1.024  0.831  H8  OZD 21 
OZD H9  H9  H 0 1 N N N N N N 3.178  70.006 160.858 -5.194 0.535  0.515  H9  OZD 22 
OZD H10 H10 H 0 1 N N N N N N 2.850  68.695 162.041 -5.543 -1.202 0.685  H10 OZD 23 
OZD H11 H11 H 0 1 N N N N N N 3.885  68.374 160.609 -4.613 -0.354 1.944  H11 OZD 24 
OZD H12 H12 H 0 1 N N N N N N 4.241  64.524 161.545 0.418  -1.880 0.036  H12 OZD 25 
OZD H13 H13 H 0 1 N N N N N N -0.886 62.728 161.081 0.754  3.776  -0.213 H13 OZD 26 
OZD H14 H14 H 0 1 N N N N N N 7.393  63.926 162.100 1.949  -4.859 -0.831 H14 OZD 27 
OZD O4  O4  O 0 1 N N N N N N 1.308  69.471 159.625 -3.449 -1.762 -0.516 O4  OZD 28 
OZD H5  H5  H 0 1 N N N N N N 2.767  62.246 162.751 2.978  0.505  0.398  H5  OZD 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OZD C1 C2  SING N N 1  
OZD C1 C   SING N N 2  
OZD O3 C8  DOUB N N 3  
OZD C2 N   DOUB N N 4  
OZD C8 N3  SING N N 5  
OZD C8 C3  SING N N 6  
OZD N  C3  SING N N 7  
OZD N3 C7  SING N N 8  
OZD C3 C4  DOUB N N 9  
OZD C7 O2  DOUB N N 10 
OZD C7 N2  SING N N 11 
OZD C4 N2  SING N N 12 
OZD C4 N1  SING N N 13 
OZD N1 C5  SING N N 14 
OZD O1 C6  SING N N 15 
OZD C6 C5  SING N N 16 
OZD C5 H1  SING N N 17 
OZD C5 H2  SING N N 18 
OZD C6 H3  SING N N 19 
OZD C6 H4  SING N N 20 
OZD C2 H8  SING N N 21 
OZD C  H9  SING N N 22 
OZD C  H10 SING N N 23 
OZD C  H11 SING N N 24 
OZD N1 H12 SING N N 25 
OZD N3 H13 SING N N 26 
OZD O1 H14 SING N N 27 
OZD C1 O4  DOUB N N 28 
OZD N2 H5  SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OZD SMILES           ACDLabs              12.01 "C(CO)NC=1NC(=O)NC(C=1\N=C\C(C)=O)=O"                                                                         
OZD InChI            InChI                1.03  "InChI=1S/C9H12N4O4/c1-5(15)4-11-6-7(10-2-3-14)12-9(17)13-8(6)16/h4,14H,2-3H2,1H3,(H3,10,12,13,16,17)/b11-4+" 
OZD InChIKey         InChI                1.03  HVWXIWYEXZLAAS-NYYWCZLTSA-N                                                                                   
OZD SMILES_CANONICAL CACTVS               3.385 "CC(=O)C=NC1=C(NCCO)NC(=O)NC1=O"                                                                              
OZD SMILES           CACTVS               3.385 "CC(=O)C=NC1=C(NCCO)NC(=O)NC1=O"                                                                              
OZD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)/C=N/C1=C(NC(=O)NC1=O)NCCO"                                                                            
OZD SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)C=NC1=C(NC(=O)NC1=O)NCCO"                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OZD "SYSTEMATIC NAME" ACDLabs              12.01 "6-[(2-hydroxyethyl)amino]-5-[(E)-(2-oxopropylidene)amino]pyrimidine-2,4(1H,3H)-dione"          
OZD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(2-hydroxyethylamino)-5-[(~{E})-2-oxidanylidenepropylideneamino]-1~{H}-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OZD "Create component" 2019-07-22 RCSB 
OZD "Create component" 2019-09-24 RCSB 
OZD "Initial release"  2020-02-19 RCSB 
OZD "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            OZD 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
