data_O6D
#

_chem_comp.id                                   O6D
_chem_comp.name                                 "(2S)-2-{[4-(3-amino-4-methylphenyl)-6-methylpyrimidin-2-yl]oxy}-3-methoxy-3,3-diphenylpropanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H27 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-12
_chem_comp.pdbx_modified_date                   2019-06-21
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       469.532
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    O6D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6P9E
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O6D  C4   C1   C  0  1  Y  N  N  -29.717   4.758  -22.832   5.837  -1.113   0.761  C4   O6D   1  
O6D  C5   C2   C  0  1  Y  N  N  -30.322   4.514  -24.065   4.536  -0.659   0.598  C5   O6D   2  
O6D  C6   C3   C  0  1  Y  N  N  -31.609   4.974  -24.353   4.290   0.475  -0.173  C6   O6D   3  
O6D  C7   C4   C  0  1  Y  N  N  -32.238   4.601  -25.643   2.902   0.966  -0.351  C7   O6D   4  
O6D  C8   C5   C  0  1  Y  N  N  -33.267   5.326  -26.231   2.645   2.102  -1.122  C8   O6D   5  
O6D  C9   C6   C  0  1  Y  N  N  -33.656   4.971  -27.514   1.334   2.522  -1.259  C9   O6D   6  
O6D  C11  C7   C  0  1  Y  N  N  -32.102   3.311  -27.503   0.643   0.763   0.060  C11  O6D   7  
O6D  C14  C8   C  0  1  N  N  S  -30.530   1.504  -27.555  -1.692   0.602   0.451  C14  O6D   8  
O6D  C15  C9   C  0  1  N  N  N  -30.362   0.115  -28.412  -2.697  -0.551   0.493  C15  O6D   9  
O6D  C24  C10  C  0  1  Y  N  N  -33.926  -2.300  -28.986  -6.585   0.913  -0.499  C24  O6D  10  
O6D  C29  C11  C  0  1  Y  N  N  -28.490   1.091  -32.202  -1.544  -3.550  -2.322  C29  O6D  11  
O6D  C23  C12  C  0  1  Y  N  N  -32.700  -2.746  -29.439  -6.450  -0.165   0.354  C23  O6D  12  
O6D  C25  C13  C  0  1  Y  N  N  -34.016  -1.083  -28.338  -5.462   1.517  -1.033  C25  O6D  13  
O6D  C28  C14  C  0  1  Y  N  N  -29.867   1.076  -32.093  -2.224  -3.906  -1.172  C28  O6D  14  
O6D  C30  C15  C  0  1  Y  N  N  -27.714   0.787  -31.101  -1.236  -2.223  -2.560  C30  O6D  15  
O6D  C1   C16  C  0  1  Y  N  N  -32.288   5.694  -23.371   5.353   1.147  -0.776  C1   O6D  16  
O6D  C22  C17  C  0  1  Y  N  N  -31.561  -1.979  -29.245  -5.192  -0.639   0.676  C22  O6D  17  
O6D  C26  C18  C  0  1  Y  N  N  -32.880  -0.309  -28.145  -4.204   1.047  -0.707  C26  O6D  18  
O6D  C27  C19  C  0  1  Y  N  N  -30.469   0.778  -30.880  -2.597  -2.936  -0.261  C27  O6D  19  
O6D  C31  C20  C  0  1  Y  N  N  -28.313   0.456  -29.894  -1.610  -1.253  -1.649  C31  O6D  20  
O6D  C2   C21  C  0  1  Y  N  N  -31.703   5.936  -22.139   6.644   0.688  -0.609  C2   O6D  21  
O6D  C21  C22  C  0  1  Y  N  N  -31.633  -0.743  -28.601  -4.069  -0.035   0.143  C21  O6D  22  
O6D  C20  C23  C  0  1  Y  N  N  -29.702   0.453  -29.764  -2.290  -1.609  -0.500  C20  O6D  23  
O6D  C3   C24  C  0  1  Y  N  N  -30.420   5.478  -21.843   6.890  -0.433   0.161  C3   O6D  24  
O6D  C16  C25  C  0  1  N  N  N  -29.215   2.260  -27.424  -2.018   1.592   1.540  C16  O6D  25  
O6D  C34  C26  C  0  1  N  N  N  -29.768   5.807  -20.528   8.303  -0.924   0.344  C34  O6D  26  
O6D  C33  C27  C  0  1  N  N  N  -34.708   5.726  -28.262   1.007   3.741  -2.082  C33  O6D  27  
O6D  C32  C28  C  0  1  N  N  N  -29.817  -1.227  -26.398  -1.464  -1.640   2.237  C32  O6D  28  
O6D  N12  N1   N  0  1  Y  N  N  -31.664   3.568  -26.272   1.881   0.328   0.217  N12  O6D  29  
O6D  N10  N2   N  0  1  Y  N  N  -33.063   3.951  -28.167   0.370   1.840  -0.661  N10  O6D  30  
O6D  N35  N3   N  0  1  N  N  N  -28.422   4.319  -22.608   6.089  -2.249   1.533  N35  O6D  31  
O6D  O17  O1   O  0  1  N  N  N  -28.898   3.137  -28.210  -1.261   1.738   2.470  O17  O6D  32  
O6D  O18  O2   O  0  1  N  N  N  -28.482   1.893  -26.386  -3.150   2.311   1.476  O18  O6D  33  
O6D  O13  O3   O  0  1  N  N  N  -31.538   2.299  -28.179  -0.373   0.091   0.651  O13  O6D  34  
O6D  O19  O4   O  0  1  N  N  N  -29.401  -0.666  -27.657  -2.722  -1.114   1.806  O19  O6D  35  
O6D  H1   H1   H  0  1  N  N  N  -29.782   3.956  -24.815   3.717  -1.183   1.067  H1   O6D  36  
O6D  H2   H2   H  0  1  N  N  N  -33.748   6.139  -25.707   3.451   2.640  -1.600  H2   O6D  37  
O6D  H3   H3   H  0  1  N  N  N  -30.863   1.217  -26.546  -1.747   1.097  -0.518  H3   O6D  38  
O6D  H4   H4   H  0  1  N  N  N  -34.811  -2.900  -29.138  -7.569   1.281  -0.754  H4   O6D  39  
O6D  H5   H5   H  0  1  N  N  N  -28.023   1.339  -33.144  -1.249  -4.308  -3.032  H5   O6D  40  
O6D  H6   H6   H  0  1  N  N  N  -32.628  -3.697  -29.947  -7.328  -0.638   0.771  H6   O6D  41  
O6D  H7   H7   H  0  1  N  N  N  -34.973  -0.733  -27.981  -5.568   2.357  -1.704  H7   O6D  42  
O6D  H8   H8   H  0  1  N  N  N  -30.477   1.297  -32.956  -2.466  -4.942  -0.987  H8   O6D  43  
O6D  H9   H9   H  0  1  N  N  N  -26.637   0.807  -31.180  -0.705  -1.945  -3.458  H9   O6D  44  
O6D  H10  H10  H  0  1  N  N  N  -33.281   6.067  -23.573   5.165   2.026  -1.375  H10  O6D  45  
O6D  H11  H11  H  0  1  N  N  N  -30.607  -2.343  -29.597  -5.087  -1.482   1.343  H11  O6D  46  
O6D  H12  H12  H  0  1  N  N  N  -32.961   0.640  -27.636  -3.326   1.519  -1.124  H12  O6D  47  
O6D  H13  H13  H  0  1  N  N  N  -31.546   0.798  -30.800  -3.129  -3.214   0.637  H13  O6D  48  
O6D  H14  H14  H  0  1  N  N  N  -27.697   0.198  -29.045  -1.369  -0.217  -1.835  H14  O6D  49  
O6D  H15  H15  H  0  1  N  N  N  -32.252   6.491  -21.393   7.465   1.210  -1.078  H15  O6D  50  
O6D  H16  H16  H  0  1  N  N  N  -29.231   6.763  -20.613   8.547  -1.631  -0.448  H16  O6D  51  
O6D  H17  H17  H  0  1  N  N  N  -30.538   5.888  -19.747   8.990  -0.078   0.300  H17  O6D  52  
O6D  H18  H18  H  0  1  N  N  N  -29.058   5.010  -20.262   8.394  -1.416   1.312  H18  O6D  53  
O6D  H19  H19  H  0  1  N  N  N  -34.823   5.297  -29.268   0.826   3.445  -3.115  H19  O6D  54  
O6D  H20  H20  H  0  1  N  N  N  -35.664   5.655  -27.722   0.114   4.221  -1.680  H20  O6D  55  
O6D  H21  H21  H  0  1  N  N  N  -34.412   6.782  -28.346   1.843   4.439  -2.045  H21  O6D  56  
O6D  H22  H22  H  0  1  N  N  N  -28.982  -1.787  -25.952  -0.758  -0.822   2.377  H22  O6D  57  
O6D  H23  H23  H  0  1  N  N  N  -30.120  -0.417  -25.718  -1.596  -2.171   3.179  H23  O6D  58  
O6D  H24  H24  H  0  1  N  N  N  -30.667  -1.906  -26.562  -1.080  -2.326   1.483  H24  O6D  59  
O6D  H25  H25  H  0  1  N  N  N  -28.139   4.572  -21.683   6.999  -2.564   1.651  H25  O6D  60  
O6D  H26  H26  H  0  1  N  N  N  -28.385   3.325  -22.708   5.354  -2.723   1.952  H26  O6D  61  
O6D  H27  H27  H  0  1  N  N  N  -27.688   2.415  -26.358  -3.316   2.934   2.197  H27  O6D  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O6D  C29  C28  DOUB  Y  N   1  
O6D  C29  C30  SING  Y  N   2  
O6D  C28  C27  SING  Y  N   3  
O6D  C30  C31  DOUB  Y  N   4  
O6D  C27  C20  DOUB  Y  N   5  
O6D  C31  C20  SING  Y  N   6  
O6D  C20  C15  SING  N  N   7  
O6D  C23  C22  DOUB  Y  N   8  
O6D  C23  C24  SING  Y  N   9  
O6D  C22  C21  SING  Y  N  10  
O6D  C24  C25  DOUB  Y  N  11  
O6D  C21  C15  SING  N  N  12  
O6D  C21  C26  DOUB  Y  N  13  
O6D  C15  O19  SING  N  N  14  
O6D  C15  C14  SING  N  N  15  
O6D  C25  C26  SING  Y  N  16  
O6D  C33  C9   SING  N  N  17  
O6D  O17  C16  DOUB  N  N  18  
O6D  O13  C14  SING  N  N  19  
O6D  O13  C11  SING  N  N  20  
O6D  N10  C9   DOUB  Y  N  21  
O6D  N10  C11  SING  Y  N  22  
O6D  O19  C32  SING  N  N  23  
O6D  C14  C16  SING  N  N  24  
O6D  C9   C8   SING  Y  N  25  
O6D  C11  N12  DOUB  Y  N  26  
O6D  C16  O18  SING  N  N  27  
O6D  N12  C7   SING  Y  N  28  
O6D  C8   C7   DOUB  Y  N  29  
O6D  C7   C6   SING  N  N  30  
O6D  C6   C5   DOUB  Y  N  31  
O6D  C6   C1   SING  Y  N  32  
O6D  C5   C4   SING  Y  N  33  
O6D  C1   C2   DOUB  Y  N  34  
O6D  C4   N35  SING  N  N  35  
O6D  C4   C3   DOUB  Y  N  36  
O6D  C2   C3   SING  Y  N  37  
O6D  C3   C34  SING  N  N  38  
O6D  C5   H1   SING  N  N  39  
O6D  C8   H2   SING  N  N  40  
O6D  C14  H3   SING  N  N  41  
O6D  C24  H4   SING  N  N  42  
O6D  C29  H5   SING  N  N  43  
O6D  C23  H6   SING  N  N  44  
O6D  C25  H7   SING  N  N  45  
O6D  C28  H8   SING  N  N  46  
O6D  C30  H9   SING  N  N  47  
O6D  C1   H10  SING  N  N  48  
O6D  C22  H11  SING  N  N  49  
O6D  C26  H12  SING  N  N  50  
O6D  C27  H13  SING  N  N  51  
O6D  C31  H14  SING  N  N  52  
O6D  C2   H15  SING  N  N  53  
O6D  C34  H16  SING  N  N  54  
O6D  C34  H17  SING  N  N  55  
O6D  C34  H18  SING  N  N  56  
O6D  C33  H19  SING  N  N  57  
O6D  C33  H20  SING  N  N  58  
O6D  C33  H21  SING  N  N  59  
O6D  C32  H22  SING  N  N  60  
O6D  C32  H23  SING  N  N  61  
O6D  C32  H24  SING  N  N  62  
O6D  N35  H25  SING  N  N  63  
O6D  N35  H26  SING  N  N  64  
O6D  O18  H27  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O6D  SMILES            ACDLabs               12.01  "c1(N)c(ccc(c1)c2cc(C)nc(n2)OC(C(O)=O)C(OC)(c3ccccc3)c4ccccc4)C"  
O6D  InChI             InChI                 1.03   "InChI=1S/C28H27N3O4/c1-18-14-15-20(17-23(18)29)24-16-19(2)30-27(31-24)35-25(26(32)33)28(34-3,21-10-6-4-7-11-21)22-12-8-5-9-13-22/h4-17,25H,29H2,1-3H3,(H,32,33)/t25-/m1/s1"  
O6D  InChIKey          InChI                 1.03   GDPBXJYDHBGQBK-RUZDIDTESA-N  
O6D  SMILES_CANONICAL  CACTVS                3.385  "COC([C@H](Oc1nc(C)cc(n1)c2ccc(C)c(N)c2)C(O)=O)(c3ccccc3)c4ccccc4"  
O6D  SMILES            CACTVS                3.385  "COC([CH](Oc1nc(C)cc(n1)c2ccc(C)c(N)c2)C(O)=O)(c3ccccc3)c4ccccc4"  
O6D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1N)c2cc(nc(n2)O[C@H](C(=O)O)C(c3ccccc3)(c4ccccc4)OC)C"  
O6D  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1N)c2cc(nc(n2)OC(C(=O)O)C(c3ccccc3)(c4ccccc4)OC)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
O6D  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-2-{[4-(3-amino-4-methylphenyl)-6-methylpyrimidin-2-yl]oxy}-3-methoxy-3,3-diphenylpropanoic acid"  
O6D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[4-(3-azanyl-4-methyl-phenyl)-6-methyl-pyrimidin-2-yl]oxy-3-methoxy-3,3-diphenyl-propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O6D  "Create component"  2019-06-12  RCSB  
O6D  "Initial release"   2019-06-26  RCSB  
##
