data_N9D
#

_chem_comp.id                                   N9D
_chem_comp.name                                 "(3R,5S)-5-[(2R)-2-amino-2-carboxyethyl]-1-(4-propylphenyl)pyrazolidine-3-carboxylic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H23 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-08
_chem_comp.pdbx_modified_date                   2020-05-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       321.372
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    N9D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6OVE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N9D  C11  C1   C  0  1  Y  N  N  -17.544  19.373  -14.833  -2.971  -0.318  -1.365  C11  N9D   1  
N9D  C17  C2   C  0  1  Y  N  N  -16.477  20.909  -13.334  -2.370  -0.473   0.950  C17  N9D   2  
N9D  C18  C3   C  0  1  Y  N  N  -17.638  20.981  -12.585  -1.070  -0.775   0.597  C18  N9D   3  
N9D  C19  C4   C  0  1  N  N  N  -20.959  21.300   -8.776   3.516  -2.458   0.584  C19  N9D   4  
N9D  O20  O1   O  0  1  N  N  N  -21.981  21.030   -8.092   4.595  -2.162   1.326  O20  N9D   5  
N9D  C02  C5   C  0  1  N  N  R  -20.517  16.726  -10.906   1.738   2.405  -0.351  C02  N9D   6  
N9D  C03  C6   C  0  1  N  N  N  -19.757  17.999  -11.283   0.867   1.151  -0.253  C03  N9D   7  
N9D  C04  C7   C  0  1  N  N  S  -20.652  19.056  -11.631   1.427   0.068  -1.177  C04  N9D   8  
N9D  C05  C8   C  0  1  N  N  N  -21.351  19.560  -10.344   2.820  -0.402  -0.684  C05  N9D   9  
N9D  C06  C9   C  0  1  N  N  R  -20.410  20.280   -9.803   2.424  -1.436   0.402  C06  N9D  10  
N9D  C09  C10  C  0  1  Y  N  N  -18.755  20.240  -12.942  -0.716  -0.850  -0.744  C09  N9D  11  
N9D  C10  C11  C  0  1  Y  N  N  -18.708  19.445  -14.081  -1.672  -0.620  -1.725  C10  N9D  12  
N9D  C12  C12  C  0  1  Y  N  N  -16.428  20.105  -14.460  -3.320  -0.245  -0.029  C12  N9D  13  
N9D  C13  C13  C  0  1  N  N  N  -15.146  20.033  -15.289  -4.738   0.085   0.361  C13  N9D  14  
N9D  C14  C14  C  0  1  N  N  N  -13.894  19.884  -14.428  -5.546  -1.208   0.484  C14  N9D  15  
N9D  C15  C15  C  0  1  N  N  N  -13.712  18.455  -13.921  -6.986  -0.873   0.879  C15  N9D  16  
N9D  C22  C16  C  0  1  N  N  N  -19.599  15.756  -10.163   1.252   3.433   0.637  C22  N9D  17  
N9D  N01  N1   N  0  1  N  N  N  -21.011  16.086  -12.111   1.654   2.955  -1.711  N01  N9D  18  
N9D  N07  N2   N  0  1  N  N  N  -19.696  21.060  -11.045   1.204  -2.070  -0.145  N07  N9D  19  
N9D  N08  N3   N  0  1  N  N  N  -19.956  20.364  -12.123   0.598  -1.156  -1.105  N08  N9D  20  
N9D  O21  O2   O  0  1  N  N  N  -20.369  22.402   -8.623   3.421  -3.543   0.062  O21  N9D  21  
N9D  O23  O3   O  0  1  N  N  N  -19.402  14.601  -10.624   0.552   4.345   0.266  O23  N9D  22  
N9D  O24  O4   O  0  1  N  N  N  -19.045  16.106   -9.088   1.596   3.336   1.931  O24  N9D  23  
N9D  H1   H1   H  0  1  N  N  N  -17.508  18.745  -15.711  -3.713  -0.135  -2.127  H1   N9D  24  
N9D  H2   H2   H  0  1  N  N  N  -15.609  21.480  -13.040  -2.646  -0.415   1.993  H2   N9D  25  
N9D  H3   H3   H  0  1  N  N  N  -17.675  21.620  -11.715  -0.329  -0.953   1.362  H3   N9D  26  
N9D  H4   H4   H  0  1  N  N  N  -22.175  21.757   -7.512   5.270  -2.849   1.414  H4   N9D  27  
N9D  H5   H5   H  0  1  N  N  N  -21.359  16.994  -10.250   2.773   2.147  -0.127  H5   N9D  28  
N9D  H6   H6   H  0  1  N  N  N  -19.104  17.785  -12.142   0.867   0.788   0.775  H6   N9D  29  
N9D  H7   H7   H  0  1  N  N  N  -19.144  18.317  -10.427  -0.153   1.393  -0.553  H7   N9D  30  
N9D  H8   H8   H  0  1  N  N  N  -21.403  18.732  -12.366   1.487   0.433  -2.202  H8   N9D  31  
N9D  H9   H9   H  0  1  N  N  N  -22.237  20.168  -10.580   3.381  -0.876  -1.489  H9   N9D  32  
N9D  H10  H10  H  0  1  N  N  N  -21.643  18.724   -9.691   3.382   0.425  -0.251  H10  N9D  33  
N9D  H11  H11  H  0  1  N  N  N  -19.643  19.664   -9.311   2.208  -0.936   1.346  H11  N9D  34  
N9D  H12  H12  H  0  1  N  N  N  -19.579  18.882  -14.381  -1.400  -0.678  -2.769  H12  N9D  35  
N9D  H13  H13  H  0  1  N  N  N  -15.213  19.168  -15.965  -4.739   0.607   1.317  H13  N9D  36  
N9D  H14  H14  H  0  1  N  N  N  -15.058  20.956  -15.881  -5.185   0.722  -0.402  H14  N9D  37  
N9D  H15  H15  H  0  1  N  N  N  -13.015  20.162  -15.029  -5.545  -1.730  -0.473  H15  N9D  38  
N9D  H16  H16  H  0  1  N  N  N  -13.976  20.559  -13.564  -5.099  -1.845   1.246  H16  N9D  39  
N9D  H17  H17  H  0  1  N  N  N  -12.801  18.396  -13.308  -6.988  -0.351   1.836  H17  N9D  40  
N9D  H18  H18  H  0  1  N  N  N  -14.582  18.168  -13.313  -7.433  -0.236   0.117  H18  N9D  41  
N9D  H19  H19  H  0  1  N  N  N  -13.622  17.771  -14.778  -7.562  -1.794   0.967  H19  N9D  42  
N9D  H20  H20  H  0  1  N  N  N  -21.508  15.253  -11.867   0.719   3.274  -1.914  H20  N9D  43  
N9D  H21  H21  H  0  1  N  N  N  -21.625  16.711  -12.593   2.327   3.695  -1.843  H21  N9D  44  
N9D  H23  H23  H  0  1  N  N  N  -18.708  21.112  -10.898   0.555  -2.303   0.592  H23  N9D  45  
N9D  H25  H25  H  0  1  N  N  N  -18.517  15.390   -8.755   1.260   4.019   2.528  H25  N9D  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N9D  C13  C12  SING  N  N   1  
N9D  C13  C14  SING  N  N   2  
N9D  C11  C12  DOUB  Y  N   3  
N9D  C11  C10  SING  Y  N   4  
N9D  C12  C17  SING  Y  N   5  
N9D  C14  C15  SING  N  N   6  
N9D  C10  C09  DOUB  Y  N   7  
N9D  C17  C18  DOUB  Y  N   8  
N9D  C09  C18  SING  Y  N   9  
N9D  C09  N08  SING  N  N  10  
N9D  N08  C04  SING  N  N  11  
N9D  N08  N07  SING  N  N  12  
N9D  N01  C02  SING  N  N  13  
N9D  C04  C03  SING  N  N  14  
N9D  C04  C05  SING  N  N  15  
N9D  C03  C02  SING  N  N  16  
N9D  N07  C06  SING  N  N  17  
N9D  C02  C22  SING  N  N  18  
N9D  O23  C22  DOUB  N  N  19  
N9D  C05  C06  SING  N  N  20  
N9D  C22  O24  SING  N  N  21  
N9D  C06  C19  SING  N  N  22  
N9D  C19  O21  DOUB  N  N  23  
N9D  C19  O20  SING  N  N  24  
N9D  C11  H1   SING  N  N  25  
N9D  C17  H2   SING  N  N  26  
N9D  C18  H3   SING  N  N  27  
N9D  O20  H4   SING  N  N  28  
N9D  C02  H5   SING  N  N  29  
N9D  C03  H6   SING  N  N  30  
N9D  C03  H7   SING  N  N  31  
N9D  C04  H8   SING  N  N  32  
N9D  C05  H9   SING  N  N  33  
N9D  C05  H10  SING  N  N  34  
N9D  C06  H11  SING  N  N  35  
N9D  C10  H12  SING  N  N  36  
N9D  C13  H13  SING  N  N  37  
N9D  C13  H14  SING  N  N  38  
N9D  C14  H15  SING  N  N  39  
N9D  C14  H16  SING  N  N  40  
N9D  C15  H17  SING  N  N  41  
N9D  C15  H18  SING  N  N  42  
N9D  C15  H19  SING  N  N  43  
N9D  N01  H20  SING  N  N  44  
N9D  N01  H21  SING  N  N  45  
N9D  N07  H23  SING  N  N  46  
N9D  O24  H25  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N9D  SMILES            ACDLabs               12.01  "c2c(ccc(N1C(CC(C(O)=O)N)CC(C(=O)O)N1)c2)CCC"  
N9D  InChI             InChI                 1.03   "InChI=1S/C16H23N3O4/c1-2-3-10-4-6-11(7-5-10)19-12(8-13(17)15(20)21)9-14(18-19)16(22)23/h4-7,12-14,18H,2-3,8-9,17H2,1H3,(H,20,21)(H,22,23)/t12-,13+,14+/m0/s1"  
N9D  InChIKey          InChI                 1.03   UPNZKJBKYMIUDF-BFHYXJOUSA-N  
N9D  SMILES_CANONICAL  CACTVS                3.385  "CCCc1ccc(cc1)N2N[C@H](C[C@@H]2C[C@@H](N)C(O)=O)C(O)=O"  
N9D  SMILES            CACTVS                3.385  "CCCc1ccc(cc1)N2N[CH](C[CH]2C[CH](N)C(O)=O)C(O)=O"  
N9D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCc1ccc(cc1)N2[C@H](C[C@@H](N2)C(=O)O)C[C@H](C(=O)O)N"  
N9D  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCc1ccc(cc1)N2C(CC(N2)C(=O)O)CC(C(=O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N9D  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R,5S)-5-[(2R)-2-amino-2-carboxyethyl]-1-(4-propylphenyl)pyrazolidine-3-carboxylic acid"  
N9D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{R},5~{S})-5-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]-1-(4-propylphenyl)pyrazolidine-3-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N9D  "Create component"  2019-05-08  RCSB  
N9D  "Initial release"   2020-05-13  RCSB  
##
