data_MGD
#

_chem_comp.id                                   MGD
_chem_comp.name                                 "2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H26 N10 O13 P2 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "MOLYBDOPTERIN GUANOSINE DINUCLEOTIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       740.557
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MGD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1AA6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MGD  PB      PB      P  0  1  N  N  R  76.024  41.615  32.763  -0.098   1.311   -1.069  PB      MGD   1  
MGD  O1B     O1B     O  0  1  N  N  N  74.800  41.012  33.335   0.513   2.551   -0.541  O1B     MGD   2  
MGD  O2B     O2B     O  0  1  N  N  N  76.113  41.838  31.285  -1.630   1.598   -1.471  O2B     MGD   3  
MGD  O3B     O3B     O  0  1  N  N  N  77.408  40.855  33.124  -0.044   0.163    0.058  O3B     MGD   4  
MGD  O3A     O3A     O  0  1  N  N  N  77.488  38.506  32.888  -0.861  -0.387    2.495  O3A     MGD   5  
MGD  PA      PA      P  0  1  N  N  S  77.853  39.635  34.007  -0.873   0.715    1.323  PA      MGD   6  
MGD  O1A     O1A     O  0  1  N  N  N  79.306  39.702  34.233  -0.249   1.964    1.815  O1A     MGD   7  
MGD  O2A     O2A     O  0  1  N  N  N  76.931  39.441  35.189  -2.392   1.012    0.881  O2A     MGD   8  
MGD  "O5'"   "O5'"   O  0  1  N  N  N  76.425  42.939  33.641   0.715   0.823   -2.370  "O5'"   MGD   9  
MGD  "C5'"   "C5'"   C  0  1  N  N  N  76.583  42.816  35.057   0.631   1.879   -3.329  "C5'"   MGD  10  
MGD  "C4'"   "C4'"   C  0  1  N  N  R  75.969  43.939  35.880   1.388   1.478   -4.597  "C4'"   MGD  11  
MGD  "O4'"   "O4'"   O  0  1  N  N  N  76.726  45.121  35.769   0.787   0.307   -5.175  "O4'"   MGD  12  
MGD  "C3'"   "C3'"   C  0  1  N  N  S  74.551  44.309  35.448   1.298   2.607   -5.641  "C3'"   MGD  13  
MGD  "O3'"   "O3'"   O  0  1  N  N  N  73.688  43.940  36.542   2.599   3.090   -5.980  "O3'"   MGD  14  
MGD  "C2'"   "C2'"   C  0  1  N  N  R  74.599  45.870  35.239   0.633   1.932   -6.869  "C2'"   MGD  15  
MGD  "O2'"   "O2'"   O  0  1  N  N  N  73.471  46.524  35.856   1.249   2.364   -8.084  "O2'"   MGD  16  
MGD  "C1'"   "C1'"   C  0  1  N  N  R  75.849  46.215  36.034   0.918   0.431   -6.608  "C1'"   MGD  17  
MGD  N9      N9      N  0  1  Y  N  N  76.474  47.493  35.621  -0.067  -0.411   -7.290  N9      MGD  18  
MGD  C8      C8      C  0  1  Y  N  N  76.374  48.134  34.407  -1.291  -0.773   -6.808  C8      MGD  19  
MGD  N7      N7      N  0  1  Y  N  N  77.100  49.214  34.337  -1.903  -1.523   -7.676  N7      MGD  20  
MGD  C5      C5      C  0  1  Y  N  N  77.708  49.305  35.580  -1.111  -1.688   -8.764  C5      MGD  21  
MGD  C6      C6      C  0  1  N  N  N  78.594  50.272  36.102  -1.250  -2.384   -9.987  C6      MGD  22  
MGD  O6      O6      O  0  1  N  N  N  78.855  51.303  35.488  -2.263  -3.016  -10.235  O6      MGD  23  
MGD  N1      N1      N  0  1  N  N  N  79.026  50.033  37.392  -0.232  -2.333  -10.874  N1      MGD  24  
MGD  C2      C2      C  0  1  N  N  N  78.613  48.938  38.114   0.895  -1.623  -10.587  C2      MGD  25  
MGD  N2      N2      N  0  1  N  N  N  79.060  48.762  39.332   1.914  -1.589  -11.506  N2      MGD  26  
MGD  N3      N3      N  0  1  N  N  N  77.771  48.046  37.623   1.036  -0.972   -9.454  N3      MGD  27  
MGD  C4      C4      C  0  1  Y  N  N  77.348  48.267  36.365   0.068  -0.973   -8.530  C4      MGD  28  
MGD  C10     C10     C  0  1  N  N  N  78.150  38.282  31.647  -1.608   0.158    3.584  C10     MGD  29  
MGD  C11     C11     C  0  1  N  N  R  78.391  36.768  31.609  -1.636  -0.846    4.738  C11     MGD  30  
MGD  O11     O11     O  0  1  N  N  N  77.195  36.043  31.778  -0.297  -1.109    5.158  O11     MGD  31  
MGD  C12     C12     C  0  1  N  N  N  79.090  36.395  30.337  -2.471  -0.282    5.854  C12     MGD  32  
MGD  S12     S12     S  0  1  N  N  N  80.419  37.424  29.793  -3.976   0.546    5.464  S12     MGD  33  
MGD  C13     C13     C  0  1  N  N  N  78.726  35.256  29.602  -2.111  -0.390    7.139  C13     MGD  34  
MGD  S13     S13     S  0  1  N  N  N  79.582  34.826  28.123  -3.142   0.294    8.393  S13     MGD  35  
MGD  C14     C14     C  0  1  N  N  R  77.596  34.379  30.087  -0.823  -1.091    7.493  C14     MGD  36  
MGD  N15     N15     N  0  1  N  N  N  76.455  34.681  29.249   0.221  -0.081    7.729  N15     MGD  37  
MGD  C16     C16     C  0  1  N  N  N  75.237  34.342  29.774   1.575  -0.474    7.687  C16     MGD  38  
MGD  C17     C17     C  0  1  N  N  N  74.101  34.331  28.922   2.579   0.343    8.214  C17     MGD  39  
MGD  O17     O17     O  0  1  N  N  N  74.181  34.641  27.714   2.304   1.417    8.728  O17     MGD  40  
MGD  N18     N18     N  0  1  N  N  N  72.898  33.999  29.516   3.859  -0.082    8.147  N18     MGD  41  
MGD  C19     C19     C  0  1  N  N  N  72.815  33.718  30.854   4.153  -1.277    7.567  C19     MGD  42  
MGD  N19     N19     N  0  1  N  N  N  71.653  33.419  31.385   5.461  -1.686    7.503  N19     MGD  43  
MGD  N20     N20     N  0  1  N  N  N  73.868  33.744  31.625   3.213  -2.053    7.070  N20     MGD  44  
MGD  C21     C21     C  0  1  N  N  N  75.089  34.046  31.136   1.927  -1.688    7.113  C21     MGD  45  
MGD  N22     N22     N  0  1  N  N  N  76.155  33.995  31.985   0.940  -2.511    6.595  N22     MGD  46  
MGD  C23     C23     C  0  1  N  N  R  77.347  34.672  31.530  -0.384  -1.954    6.304  C23     MGD  47  
MGD  HOB2    2HOB    H  0  0  N  N  N  76.898  42.225  30.917  -1.990   0.767   -1.809  HOB2    MGD  48  
MGD  HOA2    2HOA    H  0  0  N  N  N  77.200  38.703  35.723  -2.761   0.175    0.568  HOA2    MGD  49  
MGD  "H5'1"  "1H5'"  H  0  0  N  N  N  76.191  41.830  35.401  -0.413   2.065   -3.574  "H5'1"  MGD  50  
MGD  "H5'2"  "2H5'"  H  0  0  N  N  N  77.661  42.699  35.313   1.074   2.784   -2.913  "H5'2"  MGD  51  
MGD  "H4'"   "H4'"   H  0  1  N  N  N  75.954  43.542  36.921   2.433   1.278   -4.357  "H4'"   MGD  52  
MGD  "H3'"   "H3'"   H  0  1  N  N  N  74.184  43.807  34.522   0.675   3.421   -5.269  "H3'"   MGD  53  
MGD  "HO3'"  "'HO3"  H  0  0  N  N  N  72.806  44.170  36.273   2.480   3.749   -6.678  "HO3'"  MGD  54  
MGD  "H2'"   "H2'"   H  0  1  N  N  N  74.589  46.177  34.167  -0.439   2.126   -6.889  "H2'"   MGD  55  
MGD  "HO2'"  "'HO2"  H  0  0  N  N  N  73.499  47.465  35.730   1.035   3.301   -8.188  "HO2'"  MGD  56  
MGD  "H1'"   "H1'"   H  0  1  N  N  N  75.614  46.358  37.114   1.928   0.171   -6.925  "H1'"   MGD  57  
MGD  H8      H8      H  0  1  N  N  N  75.757  47.806  33.553  -1.692  -0.480   -5.849  H8      MGD  58  
MGD  HN1     HN1     H  0  1  N  N  N  79.674  50.689  37.827  -0.303  -2.803  -11.720  HN1     MGD  59  
MGD  HN21    1HN2    H  0  0  N  N  N  78.753  47.949  39.867   2.722  -1.089  -11.316  HN21    MGD  60  
MGD  HN22    2HN2    H  0  0  N  N  N  78.863  49.602  39.875   1.824  -2.065  -12.347  HN22    MGD  61  
MGD  H101    1H10    H  0  0  N  N  N  77.601  38.678  30.760  -2.628   0.364    3.258  H101    MGD  62  
MGD  H102    2H10    H  0  0  N  N  N  79.071  38.893  31.505  -1.140   1.083    3.919  H102    MGD  63  
MGD  H11     H11     H  0  1  N  N  N  79.048  36.495  32.467  -2.088  -1.774    4.390  H11     MGD  64  
MGD  H12     H12     H  0  1  N  N  N  80.862  37.187  28.986  -4.446   0.772    6.704  H12     MGD  65  
MGD  H13     H13     H  0  1  N  N  N  79.335  34.055  27.625  -3.329  -0.792    9.162  H13     MGD  66  
MGD  H14     H14     H  0  1  N  N  N  77.824  33.290  30.013  -0.960  -1.709    8.381  H14     MGD  67  
MGD  H15     H15     H  0  1  N  N  N  76.571  34.252  28.330  -0.017   0.840    7.912  H15     MGD  68  
MGD  H18     H18     H  0  1  N  N  N  72.049  33.960  28.952   4.572   0.468    8.508  H18     MGD  69  
MGD  H191    1H19    H  0  0  N  N  N  71.591  33.209  32.381   5.684  -2.538    7.095  H191    MGD  70  
MGD  H192    2H19    H  0  0  N  N  N  71.249  32.640  30.864   6.164  -1.122    7.862  H192    MGD  71  
MGD  H22     H22     H  0  1  N  N  N  76.371  33.025  32.215   1.124  -3.448    6.424  H22     MGD  72  
MGD  H23     H23     H  0  1  N  N  N  78.242  34.306  32.084  -1.102  -2.756    6.132  H23     MGD  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MGD  PB     O1B     DOUB  N  N   1  
MGD  PB     O2B     SING  N  N   2  
MGD  PB     O3B     SING  N  N   3  
MGD  PB     "O5'"   SING  N  N   4  
MGD  O2B    HOB2    SING  N  N   5  
MGD  O3B    PA      SING  N  N   6  
MGD  O3A    PA      SING  N  N   7  
MGD  O3A    C10     SING  N  N   8  
MGD  PA     O1A     DOUB  N  N   9  
MGD  PA     O2A     SING  N  N  10  
MGD  O2A    HOA2    SING  N  N  11  
MGD  "O5'"  "C5'"   SING  N  N  12  
MGD  "C5'"  "C4'"   SING  N  N  13  
MGD  "C5'"  "H5'1"  SING  N  N  14  
MGD  "C5'"  "H5'2"  SING  N  N  15  
MGD  "C4'"  "O4'"   SING  N  N  16  
MGD  "C4'"  "C3'"   SING  N  N  17  
MGD  "C4'"  "H4'"   SING  N  N  18  
MGD  "O4'"  "C1'"   SING  N  N  19  
MGD  "C3'"  "O3'"   SING  N  N  20  
MGD  "C3'"  "C2'"   SING  N  N  21  
MGD  "C3'"  "H3'"   SING  N  N  22  
MGD  "O3'"  "HO3'"  SING  N  N  23  
MGD  "C2'"  "O2'"   SING  N  N  24  
MGD  "C2'"  "C1'"   SING  N  N  25  
MGD  "C2'"  "H2'"   SING  N  N  26  
MGD  "O2'"  "HO2'"  SING  N  N  27  
MGD  "C1'"  N9      SING  N  N  28  
MGD  "C1'"  "H1'"   SING  N  N  29  
MGD  N9     C8      SING  Y  N  30  
MGD  N9     C4      SING  Y  N  31  
MGD  C8     N7      DOUB  Y  N  32  
MGD  C8     H8      SING  N  N  33  
MGD  N7     C5      SING  Y  N  34  
MGD  C5     C6      SING  N  N  35  
MGD  C5     C4      DOUB  Y  N  36  
MGD  C6     O6      DOUB  N  N  37  
MGD  C6     N1      SING  N  N  38  
MGD  N1     C2      SING  N  N  39  
MGD  N1     HN1     SING  N  N  40  
MGD  C2     N2      SING  N  N  41  
MGD  C2     N3      DOUB  N  N  42  
MGD  N2     HN21    SING  N  N  43  
MGD  N2     HN22    SING  N  N  44  
MGD  N3     C4      SING  N  N  45  
MGD  C10    C11     SING  N  N  46  
MGD  C10    H101    SING  N  N  47  
MGD  C10    H102    SING  N  N  48  
MGD  C11    O11     SING  N  N  49  
MGD  C11    C12     SING  N  N  50  
MGD  C11    H11     SING  N  N  51  
MGD  O11    C23     SING  N  N  52  
MGD  C12    S12     SING  N  N  53  
MGD  C12    C13     DOUB  N  N  54  
MGD  S12    H12     SING  N  N  55  
MGD  C13    S13     SING  N  N  56  
MGD  C13    C14     SING  N  N  57  
MGD  S13    H13     SING  N  N  58  
MGD  C14    N15     SING  N  N  59  
MGD  C14    C23     SING  N  N  60  
MGD  C14    H14     SING  N  N  61  
MGD  N15    C16     SING  N  N  62  
MGD  N15    H15     SING  N  N  63  
MGD  C16    C17     SING  N  N  64  
MGD  C16    C21     DOUB  N  N  65  
MGD  C17    O17     DOUB  N  N  66  
MGD  C17    N18     SING  N  N  67  
MGD  N18    C19     SING  N  N  68  
MGD  N18    H18     SING  N  N  69  
MGD  C19    N19     SING  N  N  70  
MGD  C19    N20     DOUB  N  N  71  
MGD  N19    H191    SING  N  N  72  
MGD  N19    H192    SING  N  N  73  
MGD  N20    C21     SING  N  N  74  
MGD  C21    N22     SING  N  N  75  
MGD  N22    C23     SING  N  N  76  
MGD  N22    H22     SING  N  N  77  
MGD  C23    H23     SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MGD  SMILES            ACDLabs               10.04  "O=C1C=2NC3C(S)=C(S)C(OC3NC=2N=C(N)N1)COP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c5N=C(N)NC4=O)C(O)C6O"  
MGD  SMILES_CANONICAL  CACTVS                3.341  "NC1=NC2=C(N[C@@H]3[C@H](N2)O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6C(=O)NC(=Nc56)N)C(=C3S)S)C(=O)N1"  
MGD  SMILES            CACTVS                3.341  "NC1=NC2=C(N[CH]3[CH](N2)O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6C(=O)NC(=Nc56)N)C(=C3S)S)C(=O)N1"  
MGD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4C(=C([C@H]5[C@@H](O4)NC6=C(N5)C(=O)NC(=N6)N)S)S)O)O)N=C(NC2=O)N"  
MGD  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(=C(C5C(O4)NC6=C(N5)C(=O)NC(=N6)N)S)S)O)O)N=C(NC2=O)N"  
MGD  InChI             InChI                 1.03   "InChI=1S/C20H26N10O13P2S2/c21-19-26-13-7(15(33)28-19)24-6-12(47)11(46)5(41-17(6)25-13)2-40-45(37,38)43-44(35,36)39-1-4-9(31)10(32)18(42-4)30-3-23-8-14(30)27-20(22)29-16(8)34/h3-6,9-10,17-18,24,31-32,46-47H,1-2H2,(H,35,36)(H,37,38)(H3,22,27,29,34)(H4,21,25,26,28,33)/t4-,5-,6+,9-,10-,17-,18-/m1/s1"  
MGD  InChIKey          InChI                 1.03   VQAGYJCYOLHZDH-ILXWUORBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MGD  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-O-[(R)-{[(S)-{[(5aR,8R,9aR)-2-amino-4-oxo-6,7-disulfanyl-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridin-8-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine"  
MGD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[[(5aR,8R,9aR)-2-amino-4-oxo-6,7-bis-sulfanyl-3,5,5a,8,9a,10-hexahydropyrano[5,6-g]pteridin-8-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MGD  "Create component"   1999-07-08  RCSB  
MGD  "Modify descriptor"  2011-06-04  RCSB  
MGD  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     MGD
_pdbx_chem_comp_synonyms.name        "MOLYBDOPTERIN GUANOSINE DINUCLEOTIDE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
