data_LND
#

_chem_comp.id                                   LND
_chem_comp.name                                 "4-carbamoyl-1-(3-{2-[(E)-(hydroxyimino)methyl]-1H-imidazol-1-yl}propyl)pyridin-1-ium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H16 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2019-03-05
_chem_comp.pdbx_modified_date                   2019-05-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       274.298
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LND
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6O5V
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LND  CAI  C1   C  0  1  Y  N  N  91.076  53.839   4.391  -2.415   1.491  -0.512  CAI  LND   1  
LND  CAF  C2   C  0  1  Y  N  N  91.486  53.043   3.354  -3.640   1.209   0.062  CAF  LND   2  
LND  CAQ  C3   C  0  1  Y  N  N  90.669  52.033   2.859  -4.071  -0.119   0.122  CAQ  LND   3  
LND  CAP  C4   C  0  1  N  N  N  91.181  51.190   1.719  -5.378  -0.469   0.728  CAP  LND   4  
LND  OAB  O1   O  0  1  N  N  N  90.658  51.264   0.603  -6.091   0.405   1.180  OAB  LND   5  
LND  NAA  N1   N  0  1  N  N  N  92.218  50.395   2.002  -5.775  -1.756   0.776  NAA  LND   6  
LND  CAG  C5   C  0  1  Y  N  N  89.423  51.843   3.448  -3.236  -1.109  -0.405  CAG  LND   7  
LND  CAJ  C6   C  0  1  Y  N  N  89.060  52.665   4.488  -2.027  -0.738  -0.961  CAJ  LND   8  
LND  NAT  N2   N  1  1  Y  N  N  89.876  53.640   4.935  -1.658   0.527  -0.997  NAT  LND   9  
LND  CAM  C7   C  0  1  N  N  N  89.436  54.494   6.056  -0.369   0.874  -1.601  CAM  LND  10  
LND  CAK  C8   C  0  1  N  N  N  90.004  55.907   6.026   0.720   0.850  -0.527  CAK  LND  11  
LND  CAL  C9   C  0  1  N  N  N  89.980  56.622   7.389   2.066   1.212  -1.158  CAL  LND  12  
LND  NAS  N3   N  0  1  Y  N  N  88.719  56.657   8.157   3.109   1.190  -0.130  NAS  LND  13  
LND  CAH  C10  C  0  1  Y  N  N  87.510  56.054   7.871   3.563   2.258   0.590  CAH  LND  14  
LND  CAE  C11  C  0  1  Y  N  N  86.641  56.367   8.881   4.522   1.796   1.423  CAE  LND  15  
LND  NAO  N4   N  0  1  Y  N  N  87.286  57.165   9.792   4.656   0.483   1.225  NAO  LND  16  
LND  CAR  C12  C  0  1  Y  N  N  88.532  57.335   9.348   3.808   0.096   0.296  CAR  LND  17  
LND  CAD  C13  C  0  1  N  N  N  89.562  58.119  10.038   3.644  -1.279  -0.202  CAD  LND  18  
LND  NAN  N5   N  0  1  N  N  N  89.424  58.439  11.282   4.370  -2.235   0.284  NAN  LND  19  
LND  OAC  O2   O  0  1  N  N  N  90.438  59.187  11.876   4.212  -3.558  -0.195  OAC  LND  20  
LND  H1   H1   H  0  1  N  N  N  91.720  54.621   4.764  -2.076   2.514  -0.567  H1   LND  21  
LND  H2   H2   H  0  1  N  N  N  92.459  53.203   2.914  -4.255   2.004   0.458  H2   LND  22  
LND  H3   H3   H  0  1  N  N  N  92.613  49.816   1.289  -5.206  -2.453   0.414  H3   LND  23  
LND  H4   H4   H  0  1  N  N  N  92.598  50.379   2.927  -6.630  -1.985   1.172  H4   LND  24  
LND  H5   H5   H  0  1  N  N  N  88.757  51.069   3.097  -3.531  -2.147  -0.378  H5   LND  25  
LND  H6   H6   H  0  1  N  N  N  88.098  52.526   4.958  -1.374  -1.495  -1.370  H6   LND  26  
LND  H7   H7   H  0  1  N  N  N  88.339  54.563   6.027  -0.127   0.151  -2.380  H7   LND  27  
LND  H8   H8   H  0  1  N  N  N  89.749  54.017   6.996  -0.429   1.871  -2.037  H8   LND  28  
LND  H9   H9   H  0  1  N  N  N  91.048  55.853   5.682   0.478   1.574   0.252  H9   LND  29  
LND  H10  H10  H  0  1  N  N  N  89.414  56.502   5.313   0.780  -0.147  -0.091  H10  LND  30  
LND  H11  H11  H  0  1  N  N  N  90.731  56.130   8.024   2.309   0.489  -1.937  H11  LND  31  
LND  H12  H12  H  0  1  N  N  N  90.278  57.666   7.211   2.007   2.210  -1.594  H12  LND  32  
LND  H13  H13  H  0  1  N  N  N  87.290  55.445   7.006   3.221   3.279   0.508  H13  LND  33  
LND  H14  H14  H  0  1  N  N  N  85.614  56.039   8.950   5.084   2.389   2.130  H14  LND  34  
LND  H15  H15  H  0  1  N  N  N  90.445  58.432   9.500   2.918  -1.491  -0.973  H15  LND  35  
LND  H16  H16  H  0  1  N  N  N  90.218  59.355  12.785   4.797  -4.202   0.227  H16  LND  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LND  OAB  CAP  DOUB  N  N   1  
LND  CAP  NAA  SING  N  N   2  
LND  CAP  CAQ  SING  N  N   3  
LND  CAQ  CAF  DOUB  Y  N   4  
LND  CAQ  CAG  SING  Y  N   5  
LND  CAF  CAI  SING  Y  N   6  
LND  CAG  CAJ  DOUB  Y  N   7  
LND  CAI  NAT  DOUB  Y  N   8  
LND  CAJ  NAT  SING  Y  N   9  
LND  NAT  CAM  SING  N  N  10  
LND  CAK  CAM  SING  N  N  11  
LND  CAK  CAL  SING  N  N  12  
LND  CAL  NAS  SING  N  N  13  
LND  CAH  NAS  SING  Y  N  14  
LND  CAH  CAE  DOUB  Y  N  15  
LND  NAS  CAR  SING  Y  N  16  
LND  CAE  NAO  SING  Y  N  17  
LND  CAR  NAO  DOUB  Y  N  18  
LND  CAR  CAD  SING  N  N  19  
LND  CAD  NAN  DOUB  N  E  20  
LND  NAN  OAC  SING  N  N  21  
LND  CAI  H1   SING  N  N  22  
LND  CAF  H2   SING  N  N  23  
LND  NAA  H3   SING  N  N  24  
LND  NAA  H4   SING  N  N  25  
LND  CAG  H5   SING  N  N  26  
LND  CAJ  H6   SING  N  N  27  
LND  CAM  H7   SING  N  N  28  
LND  CAM  H8   SING  N  N  29  
LND  CAK  H9   SING  N  N  30  
LND  CAK  H10  SING  N  N  31  
LND  CAL  H11  SING  N  N  32  
LND  CAL  H12  SING  N  N  33  
LND  CAH  H13  SING  N  N  34  
LND  CAE  H14  SING  N  N  35  
LND  CAD  H15  SING  N  N  36  
LND  OAC  H16  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LND  SMILES            ACDLabs               12.01  "c1[n+](ccc(c1)C(N)=O)CCCn2c(ncc2)\C=N\O"  
LND  InChI             InChI                 1.03   "InChI=1S/C13H15N5O2/c14-13(19)11-2-7-17(8-3-11)5-1-6-18-9-4-15-12(18)10-16-20/h2-4,7-10H,1,5-6H2,(H2-,14,15,19,20)/p+1"  
LND  InChIKey          InChI                 1.03   AEYBMKVDFNSVJO-UHFFFAOYSA-O  
LND  SMILES_CANONICAL  CACTVS                3.385  "NC(=O)c1cc[n+](CCCn2ccnc2\C=N\O)cc1"  
LND  SMILES            CACTVS                3.385  "NC(=O)c1cc[n+](CCCn2ccnc2C=NO)cc1"  
LND  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c[n+](ccc1C(=O)N)CCCn2ccnc2/C=N/O"  
LND  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c[n+](ccc1C(=O)N)CCCn2ccnc2C=NO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LND  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-carbamoyl-1-(3-{2-[(E)-(hydroxyimino)methyl]-1H-imidazol-1-yl}propyl)pyridin-1-ium"  
LND  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[3-[2-[(~{E})-hydroxyiminomethyl]imidazol-1-yl]propyl]pyridin-1-ium-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LND  "Create component"      2019-03-05  RCSB  
LND  "Modify formal charge"  2019-03-06  RCSB  
LND  "Initial release"       2019-05-29  RCSB  
##
