data_KBD
#

_chem_comp.id                                   KBD
_chem_comp.name                                 "5'-O-(benzylcarbamoyl)guanosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H20 N6 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-11-19
_chem_comp.pdbx_modified_date                   2019-09-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       416.388
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KBD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6N3X
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KBD  N1     N1   N  0  1  N  N  N  -27.565   4.775  -34.048  -6.452  -1.858  -0.341  N1     KBD   1  
KBD  N3     N2   N  0  1  N  N  N  -27.390   5.252  -31.715  -4.981  -0.123  -0.892  N3     KBD   2  
KBD  C4     C1   C  0  1  Y  N  N  -28.729   5.165  -31.589  -4.001  -0.677  -0.169  C4     KBD   3  
KBD  C5     C2   C  0  1  Y  N  N  -29.577   4.870  -32.749  -4.234  -1.879   0.509  C5     KBD   4  
KBD  C6     C3   C  0  1  N  N  N  -28.897   4.669  -34.038  -5.513  -2.476   0.407  C6     KBD   5  
KBD  C7     C4   C  0  1  N  N  N  -31.572   6.779  -23.250   5.728   0.225   0.895  C7     KBD   6  
KBD  C8     C5   C  0  1  Y  N  N  -30.826   5.113  -31.003  -2.185  -1.301   0.913  C8     KBD   7  
KBD  C15    C6   C  0  1  Y  N  N  -32.615   7.771  -23.717   6.670  -0.670   0.132  C15    KBD   8  
KBD  C17    C7   C  0  1  Y  N  N  -34.185   9.530  -23.209   8.384  -0.953  -1.516  C17    KBD   9  
KBD  C20    C8   C  0  1  Y  N  N  -32.968   7.852  -25.061   6.681  -2.031   0.376  C20    KBD  10  
KBD  C1     C9   C  0  1  N  N  N  -31.806   4.512  -24.085   3.458   1.080   0.670  C1     KBD  11  
KBD  C16    C10  C  0  1  Y  N  N  -33.224   8.614  -22.793   7.520  -0.132  -0.816  C16    KBD  12  
KBD  C18    C11  C  0  1  Y  N  N  -34.533   9.609  -24.553   8.399  -2.312  -1.268  C18    KBD  13  
KBD  C19    C12  C  0  1  Y  N  N  -33.926   8.769  -25.480   7.546  -2.852  -0.323  C19    KBD  14  
KBD  O2     O1   O  0  1  N  N  N  -32.336   3.423  -24.234   3.609   1.675   1.719  O2     KBD  15  
KBD  C2     C13  C  0  1  N  N  N  -26.849   5.043  -32.941  -6.165  -0.688  -0.979  C2     KBD  16  
KBD  N2     N3   N  0  1  N  N  N  -25.511   5.120  -33.086  -7.139  -0.083  -1.733  N2     KBD  17  
KBD  N4     N4   N  0  1  N  N  N  -32.131   5.435  -23.180   4.458   0.327   0.172  N4     KBD  18  
KBD  "C1'"  C14  C  0  1  N  N  R  -29.187   5.637  -29.209  -2.001   0.853  -0.391  "C1'"  KBD  19  
KBD  "C2'"  C15  C  0  1  N  N  R  -29.975   6.828  -28.670  -2.281   2.072   0.524  "C2'"  KBD  20  
KBD  "C3'"  C16  C  0  1  N  N  S  -29.948   6.586  -27.146  -1.041   2.963   0.266  "C3'"  KBD  21  
KBD  "C4'"  C17  C  0  1  N  N  R  -29.599   5.096  -27.022   0.015   1.988  -0.291  "C4'"  KBD  22  
KBD  "C5'"  C18  C  0  1  N  N  N  -30.585   4.295  -26.238   1.258   2.004   0.600  "C5'"  KBD  23  
KBD  N7     N5   N  0  1  Y  N  N  -30.853   4.849  -32.328  -3.087  -2.208   1.151  N7     KBD  24  
KBD  N9     N6   N  0  1  Y  N  N  -29.563   5.290  -30.571  -2.704  -0.335   0.101  N9     KBD  25  
KBD  "O2'"  O2   O  0  1  N  N  N  -29.453   8.062  -29.118  -3.480   2.740   0.130  "O2'"  KBD  26  
KBD  "O3'"  O3   O  0  1  N  N  N  -28.961   7.383  -26.478  -1.344   3.974  -0.697  "O3'"  KBD  27  
KBD  "O4'"  O4   O  0  1  N  N  N  -29.524   4.580  -28.366  -0.572   0.676  -0.289  "O4'"  KBD  28  
KBD  "O5'"  O5   O  0  1  N  N  N  -30.734   4.890  -24.965   2.291   1.174   0.005  "O5'"  KBD  29  
KBD  O6     O6   O  0  1  N  N  N  -29.549   4.429  -35.081  -5.761  -3.523   0.982  O6     KBD  30  
KBD  H2     H2   H  0  1  N  N  N  -30.729   6.783  -23.957   5.550  -0.196   1.885  H2     KBD  31  
KBD  H3     H3   H  0  1  N  N  N  -31.215   7.074  -22.252   6.170   1.216   0.996  H3     KBD  32  
KBD  H4     H4   H  0  1  N  N  N  -31.702   5.174  -30.374  -1.177  -1.312   1.300  H4     KBD  33  
KBD  H5     H5   H  0  1  N  N  N  -34.660  10.179  -22.489   9.047  -0.532  -2.257  H5     KBD  34  
KBD  H6     H6   H  0  1  N  N  N  -32.496   7.200  -25.781   6.015  -2.453   1.114  H6     KBD  35  
KBD  H7     H7   H  0  1  N  N  N  -32.950   8.557  -21.750   7.508   0.931  -1.010  H7     KBD  36  
KBD  H8     H8   H  0  1  N  N  N  -35.275  10.323  -24.877   9.074  -2.954  -1.814  H8     KBD  37  
KBD  H9     H9   H  0  1  N  N  N  -34.198   8.829  -26.523   7.555  -3.915  -0.132  H9     KBD  38  
KBD  H10    H10  H  0  1  N  N  N  -24.934   5.328  -32.297  -8.017  -0.488  -1.806  H10    KBD  39  
KBD  H11    H11  H  0  1  N  N  N  -25.096   4.969  -33.983  -6.949   0.750  -2.192  H11    KBD  40  
KBD  H12    H12  H  0  1  N  N  N  -32.766   5.202  -22.444   4.338  -0.148  -0.665  H12    KBD  41  
KBD  H13    H13  H  0  1  N  N  N  -28.111   5.860  -29.156  -2.288   1.071  -1.420  H13    KBD  42  
KBD  H14    H14  H  0  1  N  N  N  -31.017   6.726  -29.008  -2.331   1.769   1.570  H14    KBD  43  
KBD  H15    H15  H  0  1  N  N  N  -30.950   6.766  -26.728  -0.693   3.411   1.196  H15    KBD  44  
KBD  H16    H16  H  0  1  N  N  N  -28.613   5.012  -26.542   0.284   2.275  -1.308  H16    KBD  45  
KBD  H17    H17  H  0  1  N  N  N  -31.554   4.286  -26.759   1.624   3.026   0.697  H17    KBD  46  
KBD  H18    H18  H  0  1  N  N  N  -30.219   3.264  -26.125   1.003   1.615   1.586  H18    KBD  47  
KBD  H19    H19  H  0  1  N  N  N  -29.971   8.774  -28.761  -3.698   3.510   0.673  H19    KBD  48  
KBD  H20    H20  H  0  1  N  N  N  -28.983   7.200  -25.546  -2.045   4.581  -0.421  H20    KBD  49  
KBD  H21    H21  H  0  1  N  N  N  -27.081   4.650  -34.914  -7.335  -2.251  -0.429  H21    KBD  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KBD  O6     C6     DOUB  N  N   1  
KBD  N1     C6     SING  N  N   2  
KBD  N1     C2     SING  N  N   3  
KBD  C6     C5     SING  N  N   4  
KBD  N2     C2     SING  N  N   5  
KBD  C2     N3     DOUB  N  N   6  
KBD  C5     N7     SING  Y  N   7  
KBD  C5     C4     DOUB  Y  N   8  
KBD  N7     C8     DOUB  Y  N   9  
KBD  N3     C4     SING  N  N  10  
KBD  C4     N9     SING  Y  N  11  
KBD  C8     N9     SING  Y  N  12  
KBD  N9     "C1'"  SING  N  N  13  
KBD  "C1'"  "C2'"  SING  N  N  14  
KBD  "C1'"  "O4'"  SING  N  N  15  
KBD  "O2'"  "C2'"  SING  N  N  16  
KBD  "C2'"  "C3'"  SING  N  N  17  
KBD  "O4'"  "C4'"  SING  N  N  18  
KBD  "C3'"  "C4'"  SING  N  N  19  
KBD  "C3'"  "O3'"  SING  N  N  20  
KBD  "C4'"  "C5'"  SING  N  N  21  
KBD  "C5'"  "O5'"  SING  N  N  22  
KBD  C19    C20    DOUB  Y  N  23  
KBD  C19    C18    SING  Y  N  24  
KBD  C20    C15    SING  Y  N  25  
KBD  "O5'"  C1     SING  N  N  26  
KBD  C18    C17    DOUB  Y  N  27  
KBD  O2     C1     DOUB  N  N  28  
KBD  C1     N4     SING  N  N  29  
KBD  C15    C7     SING  N  N  30  
KBD  C15    C16    DOUB  Y  N  31  
KBD  C7     N4     SING  N  N  32  
KBD  C17    C16    SING  Y  N  33  
KBD  C7     H2     SING  N  N  34  
KBD  C7     H3     SING  N  N  35  
KBD  C8     H4     SING  N  N  36  
KBD  C17    H5     SING  N  N  37  
KBD  C20    H6     SING  N  N  38  
KBD  C16    H7     SING  N  N  39  
KBD  C18    H8     SING  N  N  40  
KBD  C19    H9     SING  N  N  41  
KBD  N2     H10    SING  N  N  42  
KBD  N2     H11    SING  N  N  43  
KBD  N4     H12    SING  N  N  44  
KBD  "C1'"  H13    SING  N  N  45  
KBD  "C2'"  H14    SING  N  N  46  
KBD  "C3'"  H15    SING  N  N  47  
KBD  "C4'"  H16    SING  N  N  48  
KBD  "C5'"  H17    SING  N  N  49  
KBD  "C5'"  H18    SING  N  N  50  
KBD  "O2'"  H19    SING  N  N  51  
KBD  "O3'"  H20    SING  N  N  52  
KBD  N1     H21    SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KBD  SMILES            ACDLabs               12.01  "N1C(c2c(N=C1N)n(cn2)C4C(C(C(COC(NCc3ccccc3)=O)O4)O)O)=O"  
KBD  InChI             InChI                 1.03   "InChI=1S/C18H20N6O6/c19-17-22-14-11(15(27)23-17)21-8-24(14)16-13(26)12(25)10(30-16)7-29-18(28)20-6-9-4-2-1-3-5-9/h1-5,8,10,12-13,16,25-26H,6-7H2,(H,20,28)(H3,19,22,23,27)/t10-,12-,13-,16-/m1/s1"  
KBD  InChIKey          InChI                 1.03   LCCRNJDOCQAPJZ-XNIJJKJLSA-N  
KBD  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](COC(=O)NCc4ccccc4)[C@@H](O)[C@H]3O"  
KBD  SMILES            CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](COC(=O)NCc4ccccc4)[CH](O)[CH]3O"  
KBD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)CNC(=O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O"  
KBD  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)CNC(=O)OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KBD  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-(benzylcarbamoyl)guanosine"  
KBD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(phenylmethyl)carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KBD  "Create component"  2018-11-19  RCSB  
KBD  "Initial release"   2019-09-18  RCSB  
##
