data_JKD
# 
_chem_comp.id                                    JKD 
_chem_comp.name                                  "(4R)-7-methyl-2,5-bis{2-[1-methyl-5-(pyrrolidin-1-yl)-1H-1,2,4-triazol-3-yl]ethyl}[1,2,4]triazolo[1,5-c]pyrimidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H34 N12" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-01 
_chem_comp.pdbx_modified_date                    2022-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        490.607 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JKD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SI0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JKD C02 C1  C 0 1 Y N N -53.708 73.601 -14.597 1.588   4.634  -0.551 C02 JKD 1  
JKD C04 C2  C 0 1 Y N N -54.343 74.837 -12.594 1.864   2.422  0.049  C04 JKD 2  
JKD C06 C3  C 0 1 Y N N -52.980 75.966 -14.339 -0.324  3.271  -0.166 C06 JKD 3  
JKD N09 N1  N 0 1 Y N N -53.455 77.282 -12.628 -0.292  1.138  0.427  N09 JKD 4  
JKD C10 C4  C 0 1 N N N -52.319 79.428 -13.254 -2.751  0.681  0.555  C10 JKD 5  
JKD C11 C5  C 0 1 N N N -52.946 79.835 -11.899 -3.177  0.017  -0.756 C11 JKD 6  
JKD C18 C6  C 0 1 N N N -51.374 85.354 -11.946 -8.334  -0.035 -0.686 C18 JKD 7  
JKD C19 C7  C 0 1 N N N -51.161 86.521 -11.021 -9.624  0.210  0.118  C19 JKD 8  
JKD C20 C8  C 0 1 N N N -52.475 86.769 -10.352 -9.818  -1.066 0.969  C20 JKD 9  
JKD C21 C9  C 0 1 N N N -53.468 85.975 -11.164 -8.390  -1.664 1.026  C21 JKD 10 
JKD C22 C10 C 0 1 N N N -53.745 72.336 -15.381 2.217   5.955  -0.911 C22 JKD 11 
JKD C23 C11 C 0 1 N N N -55.060 74.920 -11.233 2.792   1.275  0.359  C23 JKD 12 
JKD C24 C12 C 0 1 N N N -56.478 75.360 -11.533 4.242   1.740  0.216  C24 JKD 13 
JKD C25 C13 C 0 1 Y N N -57.320 75.547 -10.292 5.170   0.593  0.525  C25 JKD 14 
JKD C27 C14 C 0 1 Y N N -58.307 75.167 -8.412  6.419   -1.154 0.241  C27 JKD 15 
JKD N01 N2  N 0 1 Y N N -54.371 73.654 -13.348 2.365   3.584  -0.273 N01 JKD 16 
JKD C03 C15 C 0 1 Y N N -52.999 74.743 -15.135 0.232   4.519  -0.506 C03 JKD 17 
JKD N05 N3  N 0 1 Y N N -53.625 76.006 -13.147 0.524   2.232  0.115  N05 JKD 18 
JKD N07 N4  N 0 1 Y N N -52.405 77.218 -14.570 -1.562  2.820  -0.032 N07 JKD 19 
JKD C08 C16 C 0 1 Y N N -52.705 78.010 -13.495 -1.536  1.539  0.311  C08 JKD 20 
JKD C12 C17 C 0 1 Y N N -53.392 81.298 -11.930 -4.391  -0.841 -0.513 C12 JKD 21 
JKD N13 N5  N 0 1 Y N N -52.549 82.379 -11.808 -5.658  -0.434 -0.608 N13 JKD 22 
JKD C14 C18 C 0 1 Y N N -53.304 83.518 -11.882 -6.467  -1.434 -0.332 C14 JKD 23 
JKD N15 N6  N 0 1 Y N N -54.608 83.129 -12.050 -5.709  -2.514 -0.050 N15 JKD 24 
JKD N16 N7  N 0 1 Y N N -54.665 81.752 -12.078 -4.372  -2.104 -0.180 N16 JKD 25 
JKD N17 N8  N 0 1 N N N -52.751 84.903 -11.794 -7.850  -1.386 -0.329 N17 JKD 26 
JKD N26 N9  N 0 1 Y N N -57.521 74.603 -9.332  5.636   -0.286 -0.363 N26 JKD 27 
JKD N28 N10 N 0 1 Y N N -58.629 76.437 -8.774  6.464   -0.829 1.551  N28 JKD 28 
JKD N29 N11 N 0 1 Y N N -58.001 76.681 -9.960  5.650   0.305  1.705  N29 JKD 29 
JKD N30 N12 N 0 1 N N N -58.859 74.427 -7.209  7.078   -2.212 -0.359 N30 JKD 30 
JKD C31 C19 C 0 1 N N N -59.185 75.170 -6.011  6.794   -2.259 -1.810 C31 JKD 31 
JKD C32 C20 C 0 1 N N N -59.628 74.027 -5.136  6.767   -3.744 -2.217 C32 JKD 32 
JKD C33 C21 C 0 1 N N N -58.936 72.778 -5.628  7.020   -4.526 -0.908 C33 JKD 33 
JKD C34 C22 C 0 1 N N N -58.065 73.265 -6.766  6.609   -3.510 0.188  C34 JKD 34 
JKD C35 C23 C 0 1 N N N -59.477 77.369 -8.029  7.213   -1.522 2.602  C35 JKD 35 
JKD C36 C24 C 0 1 N N N -55.754 83.992 -12.177 -6.186  -3.851 0.314  C36 JKD 36 
JKD H1  H1  H 0 1 N N N -51.224 79.520 -13.208 -3.565  1.302  0.929  H1  JKD 37 
JKD H2  H2  H 0 1 N N N -52.707 80.069 -14.059 -2.511  -0.087 1.290  H2  JKD 38 
JKD H3  H3  H 0 1 N N N -53.818 79.195 -11.697 -3.416  0.785  -1.492 H3  JKD 39 
JKD H4  H4  H 0 1 N N N -52.201 79.701 -11.101 -2.363  -0.604 -1.130 H4  JKD 40 
JKD H5  H5  H 0 1 N N N -50.683 84.539 -11.684 -8.547  0.013  -1.754 H5  JKD 41 
JKD H6  H6  H 0 1 N N N -51.196 85.665 -12.986 -7.585  0.713  -0.424 H6  JKD 42 
JKD H7  H7  H 0 1 N N N -50.392 86.279 -10.273 -9.508  1.081  0.763  H7  JKD 43 
JKD H8  H8  H 0 1 N N N -50.850 87.408 -11.592 -10.470 0.348  -0.556 H8  JKD 44 
JKD H9  H9  H 0 1 N N N -52.454 86.416 -9.310  -10.171 -0.813 1.969  H9  JKD 45 
JKD H10 H10 H 0 1 N N N -52.725 87.840 -10.371 -10.505 -1.755 0.479  H10 JKD 46 
JKD H11 H11 H 0 1 N N N -53.929 86.619 -11.928 -7.793  -1.163 1.788  H11 JKD 47 
JKD H12 H12 H 0 1 N N N -54.251 85.568 -10.507 -8.429  -2.737 1.214  H12 JKD 48 
JKD H13 H13 H 0 1 N N N -54.324 71.580 -14.831 2.378   6.540  -0.006 H13 JKD 49 
JKD H14 H14 H 0 1 N N N -54.219 72.523 -16.356 3.172   5.780  -1.407 H14 JKD 50 
JKD H15 H15 H 0 1 N N N -52.719 71.971 -15.536 1.554   6.502  -1.583 H15 JKD 51 
JKD H16 H16 H 0 1 N N N -55.061 73.936 -10.741 2.619   0.933  1.379  H16 JKD 52 
JKD H17 H17 H 0 1 N N N -54.562 75.654 -10.583 2.602   0.457  -0.336 H17 JKD 53 
JKD H18 H18 H 0 1 N N N -56.440 76.316 -12.076 4.416   2.082  -0.804 H18 JKD 54 
JKD H19 H19 H 0 1 N N N -56.954 74.597 -12.166 4.432   2.558  0.911  H19 JKD 55 
JKD H20 H20 H 0 1 N N N -52.501 74.692 -16.092 -0.401  5.365  -0.726 H20 JKD 56 
JKD H21 H21 H 0 1 N N N -58.308 75.690 -5.597  5.826   -1.800 -2.014 H21 JKD 57 
JKD H22 H22 H 0 1 N N N -59.994 75.895 -6.183  7.578   -1.737 -2.359 H22 JKD 58 
JKD H23 H23 H 0 1 N N N -59.347 74.224 -4.091  5.793   -4.005 -2.631 H23 JKD 59 
JKD H24 H24 H 0 1 N N N -60.719 73.903 -5.205  7.555   -3.952 -2.941 H24 JKD 60 
JKD H25 H25 H 0 1 N N N -58.324 72.331 -4.831  6.393   -5.417 -0.863 H25 JKD 61 
JKD H26 H26 H 0 1 N N N -59.669 72.040 -5.985  8.073   -4.789 -0.813 H26 JKD 62 
JKD H27 H27 H 0 1 N N N -57.968 72.509 -7.559  7.110   -3.736 1.129  H27 JKD 63 
JKD H28 H28 H 0 1 N N N -57.065 73.562 -6.418  5.527   -3.504 0.319  H28 JKD 64 
JKD H29 H29 H 0 1 N N N -59.541 78.323 -8.573  8.210   -1.089 2.684  H29 JKD 65 
JKD H30 H30 H 0 1 N N N -60.485 76.941 -7.920  6.690   -1.414 3.552  H30 JKD 66 
JKD H31 H31 H 0 1 N N N -59.043 77.543 -7.033  7.297   -2.580 2.351  H31 JKD 67 
JKD H32 H32 H 0 1 N N N -56.661 83.382 -12.297 -6.315  -4.449 -0.588 H32 JKD 68 
JKD H33 H33 H 0 1 N N N -55.847 84.613 -11.274 -5.457  -4.331 0.967  H33 JKD 69 
JKD H34 H34 H 0 1 N N N -55.629 84.640 -13.057 -7.140  -3.767 0.834  H34 JKD 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JKD N01 C02 SING Y N 1  
JKD C02 C03 DOUB Y N 2  
JKD N01 C04 DOUB Y N 3  
JKD C04 N05 SING Y N 4  
JKD C03 C06 SING Y N 5  
JKD N05 C06 SING Y N 6  
JKD C06 N07 DOUB Y N 7  
JKD N07 C08 SING Y N 8  
JKD N05 N09 SING Y N 9  
JKD C08 N09 DOUB Y N 10 
JKD C08 C10 SING N N 11 
JKD C10 C11 SING N N 12 
JKD C11 C12 SING N N 13 
JKD C12 N13 SING Y N 14 
JKD N13 C14 DOUB Y N 15 
JKD C14 N15 SING Y N 16 
JKD C12 N16 DOUB Y N 17 
JKD N15 N16 SING Y N 18 
JKD C14 N17 SING N N 19 
JKD N17 C18 SING N N 20 
JKD C18 C19 SING N N 21 
JKD C19 C20 SING N N 22 
JKD N17 C21 SING N N 23 
JKD C20 C21 SING N N 24 
JKD C02 C22 SING N N 25 
JKD C04 C23 SING N N 26 
JKD C23 C24 SING N N 27 
JKD C24 C25 SING N N 28 
JKD C25 N26 SING Y N 29 
JKD N26 C27 DOUB Y N 30 
JKD C27 N28 SING Y N 31 
JKD C25 N29 DOUB Y N 32 
JKD N28 N29 SING Y N 33 
JKD C27 N30 SING N N 34 
JKD N30 C31 SING N N 35 
JKD C31 C32 SING N N 36 
JKD C32 C33 SING N N 37 
JKD N30 C34 SING N N 38 
JKD C33 C34 SING N N 39 
JKD N28 C35 SING N N 40 
JKD N15 C36 SING N N 41 
JKD C10 H1  SING N N 42 
JKD C10 H2  SING N N 43 
JKD C11 H3  SING N N 44 
JKD C11 H4  SING N N 45 
JKD C18 H5  SING N N 46 
JKD C18 H6  SING N N 47 
JKD C19 H7  SING N N 48 
JKD C19 H8  SING N N 49 
JKD C20 H9  SING N N 50 
JKD C20 H10 SING N N 51 
JKD C21 H11 SING N N 52 
JKD C21 H12 SING N N 53 
JKD C22 H13 SING N N 54 
JKD C22 H14 SING N N 55 
JKD C22 H15 SING N N 56 
JKD C23 H16 SING N N 57 
JKD C23 H17 SING N N 58 
JKD C24 H18 SING N N 59 
JKD C24 H19 SING N N 60 
JKD C03 H20 SING N N 61 
JKD C31 H21 SING N N 62 
JKD C31 H22 SING N N 63 
JKD C32 H23 SING N N 64 
JKD C32 H24 SING N N 65 
JKD C33 H25 SING N N 66 
JKD C33 H26 SING N N 67 
JKD C34 H27 SING N N 68 
JKD C34 H28 SING N N 69 
JKD C35 H29 SING N N 70 
JKD C35 H30 SING N N 71 
JKD C35 H31 SING N N 72 
JKD C36 H32 SING N N 73 
JKD C36 H33 SING N N 74 
JKD C36 H34 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JKD SMILES           ACDLabs              12.01 "Cn1nc(CCc2nc3cc(C)nc(CCc4nc(N5CCCC5)n(C)n4)n3n2)nc1N1CCCC1"                                                                                                 
JKD InChI            InChI                1.03  "InChI=1S/C24H34N12/c1-17-16-22-26-18(8-9-19-27-23(32(2)29-19)34-12-4-5-13-34)31-36(22)21(25-17)11-10-20-28-24(33(3)30-20)35-14-6-7-15-35/h16H,4-15H2,1-3H3" 
JKD InChIKey         InChI                1.03  FIEXXJRFFPIQCD-UHFFFAOYSA-N                                                                                                                                  
JKD SMILES_CANONICAL CACTVS               3.385 "Cn1nc(CCc2nn3c(CCc4nn(C)c(n4)N5CCCC5)nc(C)cc3n2)nc1N6CCCC6"                                                                                                 
JKD SMILES           CACTVS               3.385 "Cn1nc(CCc2nn3c(CCc4nn(C)c(n4)N5CCCC5)nc(C)cc3n2)nc1N6CCCC6"                                                                                                 
JKD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2nc(nn2c(n1)CCc3nc(n(n3)C)N4CCCC4)CCc5nc(n(n5)C)N6CCCC6"                                                                                               
JKD SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc2nc(nn2c(n1)CCc3nc(n(n3)C)N4CCCC4)CCc5nc(n(n5)C)N6CCCC6"                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JKD "SYSTEMATIC NAME" ACDLabs              12.01 "(4R)-7-methyl-2,5-bis{2-[1-methyl-5-(pyrrolidin-1-yl)-1H-1,2,4-triazol-3-yl]ethyl}[1,2,4]triazolo[1,5-c]pyrimidine" 
JKD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-methyl-2,5-bis[2-(1-methyl-5-pyrrolidin-1-yl-1,2,4-triazol-3-yl)ethyl]-[1,2,4]triazolo[1,5-c]pyrimidine"          
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JKD "Create component" 2022-02-01 RCSB 
JKD "Initial release"  2022-10-12 RCSB 
# 
