data_JJD
# 
_chem_comp.id                                    JJD 
_chem_comp.name                                  "2-[(4R)-4-(4-cyanophenyl)-5-ethanoyl-6-methyl-2-oxidanylidene-1-[3-(trifluoromethyl)phenyl]-4H-pyrimidin-3-yl]ethanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H18 F3 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-04-17 
_chem_comp.pdbx_modified_date                    2015-08-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        457.402 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JJD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5A09 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JJD C1   C1   C 0 1 N N R -4.858  35.903 -4.825 1.510  -0.480 1.192  C1   JJD 1  
JJD N2   N2   N 0 1 N N N -5.261  37.014 -3.938 0.935  0.876  1.174  N2   JJD 2  
JJD C3   C3   C 0 1 N N N -5.926  36.800 -2.784 -0.266 1.056  0.589  C3   JJD 3  
JJD N4   N4   N 0 1 N N N -5.903  35.567 -2.248 -0.946 0.048  0.030  N4   JJD 4  
JJD C5   C5   C 0 1 N N N -5.063  34.590 -2.733 -0.499 -1.241 -0.004 C5   JJD 5  
JJD C6   C6   C 0 1 N N N -4.521  34.706 -3.987 0.694  -1.580 0.544  C6   JJD 6  
JJD C7   C7   C 0 1 Y N N -5.932  35.686 -5.853 2.849  -0.426 0.503  C7   JJD 7  
JJD C8   C8   C 0 1 Y N N -5.720  36.095 -7.172 4.004  -0.683 1.221  C8   JJD 8  
JJD C9   C9   C 0 1 Y N N -6.713  35.972 -8.156 5.233  -0.635 0.596  C9   JJD 9  
JJD C10  C10  C 0 1 Y N N -7.949  35.412 -7.794 5.310  -0.328 -0.764 C10  JJD 10 
JJD C11  C11  C 0 1 Y N N -8.176  35.012 -6.477 4.140  -0.071 -1.482 C11  JJD 11 
JJD C12  C12  C 0 1 Y N N -7.176  35.139 -5.502 2.918  -0.127 -0.846 C12  JJD 12 
JJD C13  C13  C 0 1 N N N -8.877  35.310 -8.676 6.582  -0.276 -1.419 C13  JJD 13 
JJD N14  N14  N 0 1 N N N -9.757  35.283 -9.430 7.592  -0.236 -1.939 N14  JJD 14 
JJD C15  C15  C 0 1 N N N -3.581  33.793 -4.634 1.158  -2.906 0.511  C15  JJD 15 
JJD O16  O16  O 0 1 N N N -3.072  32.911 -3.941 0.540  -3.750 -0.107 O16  JJD 16 
JJD C17  C17  C 0 1 N N N -3.291  33.862 -6.089 2.421  -3.281 1.243  C17  JJD 17 
JJD C18  C18  C 0 1 Y N N -6.593  35.407 -0.998 -2.188 0.331  -0.553 C18  JJD 18 
JJD C19  C19  C 0 1 Y N N -7.857  34.829 -1.003 -3.360 -0.027 0.098  C19  JJD 19 
JJD C20  C20  C 0 1 Y N N -8.555  34.639 0.179  -4.583 0.254  -0.479 C20  JJD 20 
JJD C21  C21  C 0 1 Y N N -8.008  35.013 1.418  -4.640 0.893  -1.705 C21  JJD 21 
JJD C22  C22  C 0 1 Y N N -6.716  35.580 1.452  -3.474 1.252  -2.355 C22  JJD 22 
JJD C23  C23  C 0 1 Y N N -6.041  35.776 0.231  -2.248 0.978  -1.781 C23  JJD 23 
JJD C24  C24  C 0 1 N N N -9.929  34.057 0.076  -5.856 -0.135 0.226  C24  JJD 24 
JJD F25  F25  F 0 1 N N N -10.156 33.345 1.164  -6.269 0.913  1.055  F25  JJD 25 
JJD F26  F26  F 0 1 N N N -10.066 33.293 -0.998 -6.852 -0.401 -0.720 F26  JJD 26 
JJD F27  F27  F 0 1 N N N -10.751 35.101 -0.017 -5.630 -1.279 0.999  F27  JJD 27 
JJD C28  C28  C 0 1 N N N -4.754  33.413 -1.857 -1.344 -2.303 -0.659 C28  JJD 28 
JJD O29  O29  O 0 1 N N N -6.568  37.713 -2.208 -0.747 2.172  0.570  O29  JJD 29 
JJD C30  C30  C 0 1 N N N -5.281  38.388 -4.414 1.652  2.002  1.777  C30  JJD 30 
JJD C31  C31  C 0 1 N N N -3.862  38.930 -4.563 2.430  2.731  0.712  C31  JJD 31 
JJD O32  O32  O 0 1 N N N -2.920  38.370 -3.958 3.260  3.729  1.052  O32  JJD 32 
JJD O33  O33  O 0 1 N N N -3.682  39.909 -5.312 2.306  2.417  -0.448 O33  JJD 33 
JJD H1   H1   H 0 1 N N N -3.944  36.207 -5.356 1.682  -0.758 2.232  H1   JJD 34 
JJD H8   H8   H 0 1 N N N -4.764  36.518 -7.442 3.943  -0.920 2.272  H8   JJD 35 
JJD H9   H9   H 0 1 N N N -6.531  36.301 -9.169 6.134  -0.835 1.157  H9   JJD 36 
JJD H11  H11  H 0 1 N N N -9.136  34.599 -6.204 4.193  0.168  -2.534 H11  JJD 37 
JJD H12  H12  H 0 1 N N N -7.362  34.818 -4.488 2.012  0.068  -1.402 H12  JJD 38 
JJD H17  H17  H 0 1 N N N -2.605  33.048 -6.366 2.778  -2.424 1.814  H17  JJD 39 
JJD H17A H17A H 0 0 N N N -4.229  33.760 -6.655 2.215  -4.109 1.921  H17A JJD 40 
JJD H17B H17B H 0 0 N N N -2.824  34.830 -6.324 3.182  -3.581 0.523  H17B JJD 41 
JJD H19  H19  H 0 1 N N N -8.301  34.524 -1.939 -3.316 -0.527 1.054  H19  JJD 42 
JJD H21  H21  H 0 1 N N N -8.568  34.869 2.330  -5.597 1.111  -2.154 H21  JJD 43 
JJD H22  H22  H 0 1 N N N -6.257  35.856 2.390  -3.521 1.750  -3.312 H22  JJD 44 
JJD H23  H23  H 0 1 N N N -5.060  36.228 0.246  -1.338 1.262  -2.287 H23  JJD 45 
JJD H28  H28  H 0 1 N N N -4.074  32.729 -2.387 -2.278 -1.861 -1.005 H28  JJD 46 
JJD H28A H28A H 0 0 N N N -4.274  33.762 -0.931 -0.804 -2.724 -1.507 H28A JJD 47 
JJD H28B H28B H 0 0 N N N -5.687  32.885 -1.611 -1.559 -3.091 0.062  H28B JJD 48 
JJD H30  H30  H 0 1 N N N -5.785  38.424 -5.391 0.936  2.684  2.236  H30  JJD 49 
JJD H30A H30A H 0 0 N N N -5.831  39.011 -3.694 2.338  1.630  2.538  H30A JJD 50 
JJD HO32 HO32 H 0 0 N N N -2.103  38.808 -4.168 3.737  4.167  0.334  HO32 JJD 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JJD C7  C1   SING N N 1  
JJD C1  C6   SING N N 2  
JJD C1  N2   SING N N 3  
JJD C1  H1   SING N N 4  
JJD C30 N2   SING N N 5  
JJD N2  C3   SING N N 6  
JJD C3  N4   SING N N 7  
JJD C3  O29  DOUB N N 8  
JJD C5  N4   SING N N 9  
JJD N4  C18  SING N N 10 
JJD C6  C5   DOUB N N 11 
JJD C5  C28  SING N N 12 
JJD C15 C6   SING N N 13 
JJD C8  C7   DOUB Y N 14 
JJD C7  C12  SING Y N 15 
JJD C9  C8   SING Y N 16 
JJD C8  H8   SING N N 17 
JJD C9  C10  DOUB Y N 18 
JJD C9  H9   SING N N 19 
JJD C13 C10  SING N N 20 
JJD C10 C11  SING Y N 21 
JJD C11 C12  DOUB Y N 22 
JJD C11 H11  SING N N 23 
JJD C12 H12  SING N N 24 
JJD N14 C13  TRIP N N 25 
JJD C17 C15  SING N N 26 
JJD C15 O16  DOUB N N 27 
JJD C17 H17  SING N N 28 
JJD C17 H17A SING N N 29 
JJD C17 H17B SING N N 30 
JJD C19 C18  DOUB Y N 31 
JJD C18 C23  SING Y N 32 
JJD C19 C20  SING Y N 33 
JJD C19 H19  SING N N 34 
JJD C24 C20  SING N N 35 
JJD C20 C21  DOUB Y N 36 
JJD C21 C22  SING Y N 37 
JJD C21 H21  SING N N 38 
JJD C23 C22  DOUB Y N 39 
JJD C22 H22  SING N N 40 
JJD C23 H23  SING N N 41 
JJD F26 C24  SING N N 42 
JJD F27 C24  SING N N 43 
JJD C24 F25  SING N N 44 
JJD C28 H28  SING N N 45 
JJD C28 H28A SING N N 46 
JJD C28 H28B SING N N 47 
JJD C31 C30  SING N N 48 
JJD C30 H30  SING N N 49 
JJD C30 H30A SING N N 50 
JJD O33 C31  DOUB N N 51 
JJD C31 O32  SING N N 52 
JJD O32 HO32 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JJD InChI            InChI                1.03  "InChI=1S/C23H18F3N3O4/c1-13-20(14(2)30)21(16-8-6-15(11-27)7-9-16)28(12-19(31)32)22(33)29(13)18-5-3-4-17(10-18)23(24,25)26/h3-10,21H,12H2,1-2H3,(H,31,32)/t21-/m1/s1" 
JJD InChIKey         InChI                1.03  RRKQYMJDNSVFCG-OAQYLSRUSA-N                                                                                                                                           
JJD SMILES_CANONICAL CACTVS               3.385 "CC(=O)C1=C(C)N(C(=O)N(CC(O)=O)[C@@H]1c2ccc(cc2)C#N)c3cccc(c3)C(F)(F)F"                                                                                               
JJD SMILES           CACTVS               3.385 "CC(=O)C1=C(C)N(C(=O)N(CC(O)=O)[CH]1c2ccc(cc2)C#N)c3cccc(c3)C(F)(F)F"                                                                                                 
JJD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=C([C@H](N(C(=O)N1c2cccc(c2)C(F)(F)F)CC(=O)O)c3ccc(cc3)C#N)C(=O)C"                                                                                                
JJD SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=C(C(N(C(=O)N1c2cccc(c2)C(F)(F)F)CC(=O)O)c3ccc(cc3)C#N)C(=O)C"                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JJD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[(4R)-4-(4-cyanophenyl)-5-ethanoyl-6-methyl-2-oxidanylidene-1-[3-(trifluoromethyl)phenyl]-4H-pyrimidin-3-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JJD "Create component" 2015-04-17 EBI  
JJD "Initial release"  2015-08-19 RCSB 
# 
