data_J1D
# 
_chem_comp.id                                    J1D 
_chem_comp.name                                  "5'-{[2-({N-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]glycyl}amino)ethyl]sulfonyl}-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H30 N12 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-05-23 
_chem_comp.pdbx_modified_date                    2012-07-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        634.625 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J1D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4F7V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J1D C1  C1  C 0 1 N N S 4.865 18.014 14.149 -5.183  1.841  -0.947 C1  J1D 1  
J1D O1  O1  O 0 1 N N N 4.307 16.670 14.372 -5.539  0.486  -0.624 O1  J1D 2  
J1D C2  C2  C 0 1 N N S 6.388 17.797 14.033 -6.340  2.743  -0.475 C2  J1D 3  
J1D O2  O2  O 0 1 N N N 7.040 18.945 14.441 -6.885  3.474  -1.575 O2  J1D 4  
J1D C3  C3  C 0 1 N N R 6.607 16.590 15.038 -7.388  1.752  0.089  C3  J1D 5  
J1D O3  O3  O 0 1 N N N 6.623 16.897 16.384 -8.710  2.138  -0.290 O3  J1D 6  
J1D C4  C4  C 0 1 N N R 5.335 15.729 14.726 -6.981  0.424  -0.598 C4  J1D 7  
J1D N1  N1  N 0 1 Y N N 5.529 14.892 13.534 -7.433  -0.725 0.192  N1  J1D 8  
J1D C5  C5  C 0 1 Y N N 6.684 14.643 12.727 -6.729  -1.357 1.172  C5  J1D 9  
J1D N2  N2  N 0 1 Y N N 6.413 13.834 11.701 -7.431  -2.336 1.664  N2  J1D 10 
J1D C6  C6  C 0 1 Y N N 5.049 13.569 11.813 -8.628  -2.394 1.032  C6  J1D 11 
J1D C7  C7  C 0 1 Y N N 4.198 12.820 11.038 -9.762  -3.217 1.135  C7  J1D 12 
J1D N3  N3  N 0 1 N N N 4.690 12.193 9.907  -9.805  -4.251 2.055  N3  J1D 13 
J1D N4  N4  N 0 1 Y N N 2.872 12.704 11.403 -10.792 -2.981 0.330  N4  J1D 14 
J1D C8  C8  C 0 1 Y N N 2.439 13.386 12.512 -10.761 -1.997 -0.550 C8  J1D 15 
J1D N5  N5  N 0 1 Y N N 3.161 14.130 13.329 -9.721  -1.201 -0.683 N5  J1D 16 
J1D C9  C9  C 0 1 Y N N 4.480 14.210 12.938 -8.646  -1.357 0.084  C9  J1D 17 
J1D C10 C10 C 0 1 N N N 4.291 18.747 12.934 -3.891  2.226  -0.223 C10 J1D 18 
J1D S1  S1  S 0 1 N N N 2.529 18.900 13.010 -2.514  1.245  -0.881 S1  J1D 19 
J1D C11 C11 C 0 1 N N N 2.133 19.888 11.709 -1.117  1.855  0.101  C11 J1D 20 
J1D N6  N6  N 0 1 N N N 3.660 21.734 11.989 1.289   1.620  0.471  N6  J1D 21 
J1D C12 C12 C 0 1 N N N 2.244 21.375 12.030 0.161   1.127  -0.322 C12 J1D 22 
J1D C13 C13 C 0 1 N N N 4.218 22.094 10.781 2.524   1.118  0.270  C13 J1D 23 
J1D C14 C14 C 0 1 N N N 5.677 22.460 10.841 3.685   1.625  1.086  C14 J1D 24 
J1D N7  N7  N 0 1 N N N 5.947 23.505 9.872  4.908   0.928  0.680  N7  J1D 25 
J1D C15 C15 C 0 1 N N N 5.309 24.738 9.861  6.080   1.220  1.278  C15 J1D 26 
J1D O4  O4  O 0 1 N N N 4.436 25.062 10.661 6.123   2.063  2.155  O4  J1D 27 
J1D N8  N8  N 0 1 N N N 7.201 27.892 5.598  10.533  -1.775 -0.065 N8  J1D 28 
J1D C16 C16 C 0 1 N N N 8.369 27.493 5.134  10.554  -2.399 -1.228 C16 J1D 29 
J1D N9  N9  N 0 1 N N N 8.990 28.125 4.057  11.673  -3.096 -1.586 N9  J1D 30 
J1D N10 N10 N 0 1 N N N 9.080 26.453 5.586  9.494   -2.370 -2.082 N10 J1D 31 
J1D C17 C17 C 0 1 N N N 8.687 25.662 6.678  8.375   -1.683 -1.763 C17 J1D 32 
J1D O5  O5  O 0 1 N N N 9.428 24.758 6.998  7.421   -1.656 -2.520 O5  J1D 33 
J1D N11 N11 N 0 1 N N N 6.955 25.324 8.275  7.267   -0.291 -0.144 N11 J1D 34 
J1D C18 C18 C 0 1 N N N 5.789 25.629 8.757  7.303   0.523  0.873  C18 J1D 35 
J1D C19 C19 C 0 1 N N N 4.929 26.801 8.359  8.578   0.760  1.641  C19 J1D 36 
J1D C20 C20 C 0 1 N N N 4.826 27.803 9.520  8.249   1.030  3.111  C20 J1D 37 
J1D C21 C21 C 0 1 N N N 3.597 26.274 7.839  9.314   1.965  1.051  C21 J1D 38 
J1D N12 N12 N 0 1 N N N 5.544 27.528 7.216  9.427   -0.438 1.538  N12 J1D 39 
J1D C22 C22 C 0 1 N N N 6.718 27.138 6.682  9.468   -1.081 0.321  C22 J1D 40 
J1D C23 C23 C 0 1 N N N 7.417 26.064 7.225  8.340   -0.995 -0.524 C23 J1D 41 
J1D O6  O6  O 0 1 N N N 3.555 22.132 9.751  2.701   0.259  -0.567 O6  J1D 42 
J1D O7  O7  O 0 1 N N N 2.012 17.614 12.737 -2.735  -0.121 -0.554 O7  J1D 43 
J1D O8  O8  O 0 1 N N N 2.317 19.605 14.237 -2.307  1.609  -2.238 O8  J1D 44 
J1D H1  H1  H 0 1 N N N 4.677 18.630 15.041 -5.049  1.943  -2.023 H1  J1D 45 
J1D H2  H2  H 0 1 N N N 6.657 17.489 13.012 -5.999  3.425  0.304  H2  J1D 46 
J1D H3  H3  H 0 1 N N N 7.979 18.818 14.372 -7.617  4.058  -1.335 H3  J1D 47 
J1D H4  H4  H 0 1 N N N 7.505 16.031 14.734 -7.304  1.672  1.173  H4  J1D 48 
J1D H5  H5  H 0 1 N N N 6.760 16.104 16.889 -8.977  3.006  0.042  H5  J1D 49 
J1D H6  H6  H 0 1 N N N 5.060 15.126 15.604 -7.382  0.377  -1.610 H6  J1D 50 
J1D H7  H7  H 0 1 N N N 7.660 15.061 12.925 -5.734  -1.087 1.493  H7  J1D 51 
J1D H8  H8  H 0 1 N N N 3.953 11.689 9.457  -10.593 -4.812 2.117  H8  J1D 52 
J1D H9  H9  H 0 1 N N N 5.057 12.879 9.278  -9.046  -4.414 2.637  H9  J1D 53 
J1D H10 H10 H 0 1 N N N 1.387 13.305 12.743 -11.620 -1.839 -1.185 H10 J1D 54 
J1D H11 H11 H 0 1 N N N 4.558 18.188 12.025 -3.689  3.286  -0.379 H11 J1D 55 
J1D H12 H12 H 0 1 N N N 4.732 19.754 12.888 -4.000  2.030  0.844  H12 J1D 56 
J1D H13 H13 H 0 1 N N N 1.097 19.671 11.408 -0.996  2.926  -0.064 H13 J1D 57 
J1D H14 H14 H 0 1 N N N 2.813 19.658 10.875 -1.307  1.670  1.159  H14 J1D 58 
J1D H15 H15 H 0 1 N N N 4.214 21.719 12.822 1.148   2.307  1.141  H15 J1D 59 
J1D H16 H16 H 0 1 N N N 1.687 21.962 11.285 0.040   0.056  -0.156 H16 J1D 60 
J1D H17 H17 H 0 1 N N N 1.836 21.573 13.032 0.351   1.311  -1.379 H17 J1D 61 
J1D H18 H18 H 0 1 N N N 6.288 21.575 10.608 3.806   2.696  0.920  H18 J1D 62 
J1D H19 H19 H 0 1 N N N 5.924 22.821 11.850 3.495   1.440  2.143  H19 J1D 63 
J1D H20 H20 H 0 1 N N N 6.635 23.326 9.169  4.875   0.256  -0.018 H20 J1D 64 
J1D H21 H21 H 0 1 N N N 8.549 28.905 3.613  11.704  -3.560 -2.437 H21 J1D 65 
J1D H22 H22 H 0 1 N N N 9.876 27.798 3.729  12.437  -3.126 -0.989 H22 J1D 66 
J1D H23 H23 H 0 1 N N N 9.936 26.227 5.122  9.542   -2.846 -2.925 H23 J1D 67 
J1D H24 H24 H 0 1 N N N 4.375 27.309 10.393 7.579   0.254  3.481  H24 J1D 68 
J1D H25 H25 H 0 1 N N N 5.831 28.164 9.783  9.169   1.027  3.696  H25 J1D 69 
J1D H26 H26 H 0 1 N N N 4.199 28.654 9.215  7.764   2.002  3.202  H26 J1D 70 
J1D H27 H27 H 0 1 N N N 3.083 25.721 8.639  8.680   2.848  1.121  H27 J1D 71 
J1D H28 H28 H 0 1 N N N 2.970 27.118 7.516  10.236  2.135  1.607  H28 J1D 72 
J1D H29 H29 H 0 1 N N N 3.776 25.603 6.986  9.552   1.769  0.005  H29 J1D 73 
J1D H31 H31 H 0 1 N N N 5.672 28.472 7.519  9.937   -0.761 2.297  H31 J1D 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J1D N9  C16 SING N N 1  
J1D C16 N10 SING N N 2  
J1D C16 N8  DOUB N N 3  
J1D N10 C17 SING N N 4  
J1D N8  C22 SING N N 5  
J1D C17 O5  DOUB N N 6  
J1D C17 C23 SING N N 7  
J1D C22 N12 SING N N 8  
J1D C22 C23 DOUB N N 9  
J1D N12 C19 SING N N 10 
J1D C23 N11 SING N N 11 
J1D C21 C19 SING N N 12 
J1D N11 C18 DOUB N N 13 
J1D C19 C18 SING N N 14 
J1D C19 C20 SING N N 15 
J1D C18 C15 SING N N 16 
J1D O6  C13 DOUB N N 17 
J1D C15 N7  SING N N 18 
J1D C15 O4  DOUB N N 19 
J1D N7  C14 SING N N 20 
J1D N3  C7  SING N N 21 
J1D C13 C14 SING N N 22 
J1D C13 N6  SING N N 23 
J1D C7  N4  DOUB Y N 24 
J1D C7  C6  SING Y N 25 
J1D N4  C8  SING Y N 26 
J1D N2  C6  SING Y N 27 
J1D N2  C5  DOUB Y N 28 
J1D C11 C12 SING N N 29 
J1D C11 S1  SING N N 30 
J1D C6  C9  DOUB Y N 31 
J1D N6  C12 SING N N 32 
J1D C8  N5  DOUB Y N 33 
J1D C5  N1  SING Y N 34 
J1D O7  S1  DOUB N N 35 
J1D C10 S1  SING N N 36 
J1D C10 C1  SING N N 37 
J1D C9  N5  SING Y N 38 
J1D C9  N1  SING Y N 39 
J1D S1  O8  DOUB N N 40 
J1D N1  C4  SING N N 41 
J1D C2  C1  SING N N 42 
J1D C2  O2  SING N N 43 
J1D C2  C3  SING N N 44 
J1D C1  O1  SING N N 45 
J1D O1  C4  SING N N 46 
J1D C4  C3  SING N N 47 
J1D C3  O3  SING N N 48 
J1D C1  H1  SING N N 49 
J1D C2  H2  SING N N 50 
J1D O2  H3  SING N N 51 
J1D C3  H4  SING N N 52 
J1D O3  H5  SING N N 53 
J1D C4  H6  SING N N 54 
J1D C5  H7  SING N N 55 
J1D N3  H8  SING N N 56 
J1D N3  H9  SING N N 57 
J1D C8  H10 SING N N 58 
J1D C10 H11 SING N N 59 
J1D C10 H12 SING N N 60 
J1D C11 H13 SING N N 61 
J1D C11 H14 SING N N 62 
J1D N6  H15 SING N N 63 
J1D C12 H16 SING N N 64 
J1D C12 H17 SING N N 65 
J1D C14 H18 SING N N 66 
J1D C14 H19 SING N N 67 
J1D N7  H20 SING N N 68 
J1D N9  H21 SING N N 69 
J1D N9  H22 SING N N 70 
J1D N10 H23 SING N N 71 
J1D C20 H24 SING N N 72 
J1D C20 H25 SING N N 73 
J1D C20 H26 SING N N 74 
J1D C21 H27 SING N N 75 
J1D C21 H28 SING N N 76 
J1D C21 H29 SING N N 77 
J1D N12 H31 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J1D SMILES           ACDLabs              12.01 "O=C2NC(=NC=1NC(C(=NC=12)C(=O)NCC(=O)NCCS(=O)(=O)CC5OC(n4cnc3c(ncnc34)N)C(O)C5O)(C)C)N" 
J1D InChI            InChI                1.03  
;InChI=1S/C23H30N12O8S/c1-23(2)15(31-12-17(34-23)32-22(25)33-19(12)39)20(40)27-5-10(36)26-3-4-44(41,42)6-9-13(37)14(38)21(43-9)35-8-30-11-16(24)28-7-29-18(11)35/h7-9,13-14,21,37-38H,3-6H2,1-2H3,(H,26,36)(H,27,40)(H2,24,28,29)(H4,25,32,33,34,39)/t9-,13-,14-,21-/m1/s1
;
J1D InChIKey         InChI                1.03  QCWCABDSXQYDST-GWKRVTOESA-N 
J1D SMILES_CANONICAL CACTVS               3.370 "CC1(C)NC2=C(N=C1C(=O)NCC(=O)NCC[S](=O)(=O)C[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(=O)NC(=N2)N" 
J1D SMILES           CACTVS               3.370 "CC1(C)NC2=C(N=C1C(=O)NCC(=O)NCC[S](=O)(=O)C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(=O)NC(=N2)N" 
J1D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCC(=O)NCCS(=O)(=O)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)C" 
J1D SMILES           "OpenEye OEToolkits" 1.7.6 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCC(=O)NCCS(=O)(=O)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
J1D "SYSTEMATIC NAME" ACDLabs              12.01 "5'-{[2-({N-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]glycyl}amino)ethyl]sulfonyl}-5'-deoxyadenosine"                                                                       
J1D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[2-[2-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfonyl]ethylamino]-2-oxidanylidene-ethyl]-2-azanyl-7,7-dimethyl-4-oxidanylidene-3,8-dihydropteridine-6-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J1D "Create component" 2012-05-23 RCSB 
# 
