data_E6D
# 
_chem_comp.id                                    E6D 
_chem_comp.name                                  "ethyl (3S)-3-hydroxy-4-({(2S)-4-methyl-1-[(3-methylbutyl)amino]-1-oxopentan-2-yl}amino)-4-oxobutanoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H32 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-12-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        344.446 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     E6D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EZS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
E6D C14 C1  C 0 1 N N N N N N 22.997 39.511 8.130  -6.058 -3.304 0.697  C14 E6D 1  
E6D C13 C2  C 0 1 N N N N N N 22.803 40.303 6.862  -6.432 -2.127 -0.206 C13 E6D 2  
E6D C15 C3  C 0 1 N N N N N N 21.786 41.306 7.230  -7.889 -1.734 0.046  C15 E6D 3  
E6D C12 C4  C 0 1 N N N N N N 22.269 39.443 5.680  -5.522 -0.937 0.103  C12 E6D 4  
E6D C11 C5  C 0 1 N N N N N N 20.834 38.947 5.690  -4.080 -1.288 -0.267 C11 E6D 5  
E6D N10 N1  N 0 1 N N N N N N 19.786 39.922 5.276  -3.208 -0.149 0.029  N10 E6D 6  
E6D C8  C6  C 0 1 N N N N N N 19.857 41.083 4.496  -1.886 -0.230 -0.217 C8  E6D 7  
E6D O9  O1  O 0 1 N N N N N N 18.848 41.753 4.261  -1.417 -1.246 -0.684 O9  E6D 8  
E6D C7  C7  C 0 1 N N S N N N 21.247 41.532 3.852  -0.989 0.943  0.088  C7  E6D 9  
E6D C19 C8  C 0 1 N N N N N N 22.208 42.368 4.675  -1.443 2.157  -0.725 C19 E6D 10 
E6D C20 C9  C 0 1 N N N N N N 21.886 43.779 5.065  -0.613 3.378  -0.325 C20 E6D 11 
E6D C22 C10 C 0 1 N N N N N N 23.112 44.662 4.988  -0.980 4.561  -1.223 C22 E6D 12 
E6D C21 C11 C 0 1 N N N N N N 21.453 43.734 6.527  -0.905 3.736  1.134  C21 E6D 13 
E6D N6  N2  N 0 1 N N N N N N 21.145 41.960 2.420  0.392  0.606  -0.266 N6  E6D 14 
E6D C4  C12 C 0 1 N N N N N N 22.112 41.670 1.560  1.416  1.235  0.343  C4  E6D 15 
E6D O5  O2  O 0 1 N N N N N N 23.075 41.084 1.914  1.195  2.080  1.185  O5  E6D 16 
E6D C3  C13 C 0 1 N N S N N N 21.958 42.017 0.030  2.837  0.889  -0.021 C3  E6D 17 
E6D O1  O3  O 0 1 N N N N N N 20.664 42.287 -0.344 3.732  1.764  0.669  O1  E6D 18 
E6D C2  C14 C 0 1 N N N N N N 22.892 43.154 -0.464 3.128  -0.558 0.380  C2  E6D 19 
E6D C16 C15 C 0 1 N N N N N N 22.533 43.453 -1.898 4.506  -0.943 -0.094 C16 E6D 20 
E6D O18 O4  O 0 1 N N N N N N 23.087 42.915 -2.823 5.186  -0.142 -0.691 O18 E6D 21 
E6D O17 O5  O 0 1 N N N N N N 21.576 44.381 -2.037 4.978  -2.177 0.148  O17 E6D 22 
E6D C23 C16 C 0 1 N N N N N N 20.858 44.358 -3.261 6.313  -2.478 -0.338 C23 E6D 23 
E6D H1  H1  H 0 1 N N N N N N 23.374 40.174 8.923  -6.707 -4.152 0.477  H1  E6D 24 
E6D H2  H2  H 0 1 N N N N N N 22.036 39.077 8.442  -5.020 -3.584 0.518  H2  E6D 25 
E6D H3  H3  H 0 1 N N N N N N 23.723 38.704 7.951  -6.181 -3.014 1.741  H3  E6D 26 
E6D H4  H4  H 0 1 N N N N N N 23.744 40.791 6.569  -6.310 -2.417 -1.250 H4  E6D 27 
E6D H5  H5  H 0 1 N N N N N N 22.158 41.917 8.065  -8.012 -1.444 1.089  H5  E6D 28 
E6D H6  H6  H 0 1 N N N N N N 21.580 41.954 6.365  -8.156 -0.896 -0.598 H6  E6D 29 
E6D H7  H7  H 0 1 N N N N N N 20.860 40.795 7.534  -8.538 -2.582 -0.175 H7  E6D 30 
E6D H8  H8  H 0 1 N N N N N N 22.912 38.553 5.619  -5.845 -0.072 -0.476 H8  E6D 31 
E6D H9  H9  H 0 1 N N N N N N 22.390 40.046 4.768  -5.578 -0.703 1.166  H9  E6D 32 
E6D H10 H10 H 0 1 N N N N N N 20.601 38.622 6.715  -3.757 -2.153 0.313  H10 E6D 33 
E6D H11 H11 H 0 1 N N N N N N 20.775 38.085 5.009  -4.024 -1.522 -1.330 H11 E6D 34 
E6D H12 H12 H 0 1 N N N N N N 18.870 39.710 5.615  -3.583 0.664  0.403  H12 E6D 35 
E6D H13 H13 H 0 1 N N N N N N 21.778 40.572 3.776  -1.045 1.176  1.151  H13 E6D 36 
E6D H14 H14 H 0 1 N N N N N N 22.373 41.817 5.613  -1.303 1.955  -1.788 H14 E6D 37 
E6D H15 H15 H 0 1 N N N N N N 23.148 42.411 4.105  -2.497 2.353  -0.528 H15 E6D 38 
E6D H16 H16 H 0 1 N N N N N N 21.078 44.183 4.438  0.447  3.150  -0.438 H16 E6D 39 
E6D H17 H17 H 0 1 N N N N N N 22.844 45.688 5.279  -2.040 4.788  -1.110 H17 E6D 40 
E6D H18 H18 H 0 1 N N N N N N 23.884 44.277 5.670  -0.389 5.431  -0.938 H18 E6D 41 
E6D H19 H19 H 0 1 N N N N N N 23.499 44.662 3.958  -0.772 4.306  -2.262 H19 E6D 42 
E6D H20 H20 H 0 1 N N N N N N 21.203 44.750 6.867  -0.314 4.606  1.420  H20 E6D 43 
E6D H21 H21 H 0 1 N N N N N N 20.570 43.086 6.628  -1.965 3.964  1.247  H21 E6D 44 
E6D H22 H22 H 0 1 N N N N N N 22.274 43.333 7.140  -0.643 2.894  1.774  H22 E6D 45 
E6D H23 H23 H 0 1 N N N N N N 20.342 42.468 2.110  0.569  -0.069 -0.939 H23 E6D 46 
E6D H24 H24 H 0 1 N N N N N N 22.281 41.113 -0.508 2.975  1.003  -1.096 H24 E6D 47 
E6D H25 H25 H 0 1 N N N N N N 20.094 41.590 -0.041 3.665  1.715  1.632  H25 E6D 48 
E6D H26 H26 H 0 1 N N N N N N 23.942 42.831 -0.400 3.078  -0.652 1.465  H26 E6D 49 
E6D H27 H27 H 0 1 N N N N N N 22.747 44.053 0.154  2.390  -1.217 -0.076 H27 E6D 50 
E6D H28 H28 H 0 1 N N N N N N 20.107 45.160 -3.309 6.341  -2.360 -1.421 H28 E6D 51 
E6D H29 H29 H 0 1 N N N N N N 21.529 44.431 -4.130 7.029  -1.795 0.120  H29 E6D 52 
E6D C24 C17 C 0 1 N N N N N N ?      ?      ?      6.676  -3.918 0.029  C24 E6D 53 
E6D H30 H30 H 0 1 N N N N N N ?      ?      ?      7.679  -4.144 -0.336 H30 E6D 54 
E6D H31 H31 H 0 1 N N N N N N ?      ?      ?      6.649  -4.036 1.112  H31 E6D 55 
E6D H32 H32 H 0 1 N N N N N N ?      ?      ?      5.961  -4.601 -0.429 H32 E6D 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
E6D C23 O17 SING N N 1  
E6D O18 C16 DOUB N N 2  
E6D O17 C16 SING N N 3  
E6D C16 C2  SING N N 4  
E6D C2  C3  SING N N 5  
E6D O1  C3  SING N N 6  
E6D C3  C4  SING N N 7  
E6D C4  O5  DOUB N N 8  
E6D C4  N6  SING N N 9  
E6D N6  C7  SING N N 10 
E6D C7  C8  SING N N 11 
E6D C7  C19 SING N N 12 
E6D O9  C8  DOUB N N 13 
E6D C8  N10 SING N N 14 
E6D C19 C20 SING N N 15 
E6D C22 C20 SING N N 16 
E6D C20 C21 SING N N 17 
E6D N10 C11 SING N N 18 
E6D C12 C11 SING N N 19 
E6D C12 C13 SING N N 20 
E6D C13 C15 SING N N 21 
E6D C13 C14 SING N N 22 
E6D C14 H1  SING N N 23 
E6D C14 H2  SING N N 24 
E6D C14 H3  SING N N 25 
E6D C13 H4  SING N N 26 
E6D C15 H5  SING N N 27 
E6D C15 H6  SING N N 28 
E6D C15 H7  SING N N 29 
E6D C12 H8  SING N N 30 
E6D C12 H9  SING N N 31 
E6D C11 H10 SING N N 32 
E6D C11 H11 SING N N 33 
E6D N10 H12 SING N N 34 
E6D C7  H13 SING N N 35 
E6D C19 H14 SING N N 36 
E6D C19 H15 SING N N 37 
E6D C20 H16 SING N N 38 
E6D C22 H17 SING N N 39 
E6D C22 H18 SING N N 40 
E6D C22 H19 SING N N 41 
E6D C21 H20 SING N N 42 
E6D C21 H21 SING N N 43 
E6D C21 H22 SING N N 44 
E6D N6  H23 SING N N 45 
E6D C3  H24 SING N N 46 
E6D O1  H25 SING N N 47 
E6D C2  H26 SING N N 48 
E6D C2  H27 SING N N 49 
E6D C23 H28 SING N N 50 
E6D C23 H29 SING N N 51 
E6D C23 C24 SING N N 52 
E6D C24 H30 SING N N 53 
E6D C24 H31 SING N N 54 
E6D C24 H32 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
E6D SMILES           ACDLabs              12.01 "CC(C)CCNC(=O)C(CC(C)C)NC(=O)C(O)CC(=O)OCC"                                                                                                     
E6D InChI            InChI                1.03  "InChI=1S/C17H32N2O5/c1-6-24-15(21)10-14(20)17(23)19-13(9-12(4)5)16(22)18-8-7-11(2)3/h11-14,20H,6-10H2,1-5H3,(H,18,22)(H,19,23)/t13-,14-/m0/s1" 
E6D InChIKey         InChI                1.03  FGRTVYZNNRCSAS-KBPBESRZSA-N                                                                                                                     
E6D SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)C[C@H](O)C(=O)N[C@@H](CC(C)C)C(=O)NCCC(C)C"                                                                                            
E6D SMILES           CACTVS               3.385 "CCOC(=O)C[CH](O)C(=O)N[CH](CC(C)C)C(=O)NCCC(C)C"                                                                                               
E6D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCOC(=O)C[C@@H](C(=O)N[C@@H](CC(C)C)C(=O)NCCC(C)C)O"                                                                                           
E6D SMILES           "OpenEye OEToolkits" 2.0.6 "CCOC(=O)CC(C(=O)NC(CC(C)C)C(=O)NCCC(C)C)O"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
E6D "SYSTEMATIC NAME" ACDLabs              12.01 "ethyl (3S)-3-hydroxy-4-({(2S)-4-methyl-1-[(3-methylbutyl)amino]-1-oxopentan-2-yl}amino)-4-oxobutanoate"                            
E6D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "ethyl (3~{S})-4-[[(2~{S})-4-methyl-1-(3-methylbutylamino)-1-oxidanylidene-pentan-2-yl]amino]-3-oxidanyl-4-oxidanylidene-butanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
E6D "Create component"   2015-12-01 RCSB 
E6D "Initial release"    2016-04-13 RCSB 
E6D "Other modification" 2016-10-20 RCSB 
E6D "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            E6D 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
