data_AZD
# 
_chem_comp.id                                    AZD 
_chem_comp.name                                  "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-DIPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H15 N5 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        427.201 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AZD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        1LWX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AZD PA     PA   P 0  1 N N S 49.464 2.366 9.093  -3.098 -0.213 -0.139 PA     AZD 1  
AZD O1A    O1A  O 0  1 N N N 48.175 1.901 9.636  -2.807 0.457  1.148  O1A    AZD 2  
AZD O2A    O2A  O 0  1 N N N 49.695 2.417 7.638  -3.799 -1.635 0.142  O2A    AZD 3  
AZD O3A    O3A  O 0  1 N N N 49.826 3.852 9.689  -4.088 0.710  -1.012 O3A    AZD 4  
AZD PB     PB   P 0  1 N N N 49.011 5.020 10.486 -5.165 1.333  0.010  PB     AZD 5  
AZD O1B    O1B  O 0  1 N N N 47.580 4.771 10.331 -5.934 2.556  -0.701 O1B    AZD 6  
AZD O2B    O2B  O 0  1 N N N 49.310 6.278 9.770  -6.229 0.199  0.425  O2B    AZD 7  
AZD O3B    O3B  O 0  1 N N N 49.347 4.858 11.936 -4.470 1.824  1.220  O3B    AZD 8  
AZD "O5'"  O5*  O 0  1 N N N 50.550 1.426 9.800  -1.725 -0.442 -0.948 "O5'"  AZD 9  
AZD "C5'"  C5*  C 0  1 N N N 50.239 1.142 11.225 -0.849 -1.163 -0.079 "C5'"  AZD 10 
AZD "C4'"  C4*  C 0  1 N N S 51.437 1.182 12.176 0.481  -1.415 -0.791 "C4'"  AZD 11 
AZD "O4'"  O4*  O 0  1 N N N 52.265 0.465 11.266 1.228  -0.185 -0.933 "O4'"  AZD 12 
AZD "C3'"  C3*  C 0  1 N N S 52.134 2.532 12.433 1.406  -2.303 0.080  "C3'"  AZD 13 
AZD "N3'"  N3*  N 0  1 N N N 52.484 2.804 13.889 1.129  -3.724 -0.144 "N3'"  AZD 14 
AZD "N4'"  N4*  N 1  1 N N N 51.749 3.648 14.396 1.725  -4.506 0.402  "N4'"  AZD 15 
AZD "N5'"  N5*  N -1 1 N N N 50.937 4.304 14.766 2.320  -5.287 0.948  "N5'"  AZD 16 
AZD "C2'"  C2*  C 0  1 N N N 53.295 2.578 11.466 2.811  -1.924 -0.449 "C2'"  AZD 17 
AZD "C1'"  C1*  C 0  1 N N R 53.526 1.100 11.053 2.605  -0.552 -1.119 "C1'"  AZD 18 
AZD N1     N1   N 0  1 N N N 54.005 0.716 9.642  3.475  0.445  -0.490 N1     AZD 19 
AZD C2     C2   C 0  1 N N N 55.371 0.391 9.448  3.288  0.774  0.801  C2     AZD 20 
AZD O2     O2   O 0  1 N N N 56.167 0.131 10.347 2.397  0.239  1.432  O2     AZD 21 
AZD N3     N3   N 0  1 N N N 55.836 0.396 8.149  4.073  1.686  1.404  N3     AZD 22 
AZD C4     C4   C 0  1 N N N 55.080 0.680 7.065  5.068  2.284  0.719  C4     AZD 23 
AZD O4     O4   O 0  1 N N N 55.615 0.702 5.992  5.779  3.110  1.263  O4     AZD 24 
AZD C5     C5   C 0  1 N N N 53.722 0.964 7.297  5.273  1.951  -0.642 C5     AZD 25 
AZD C5A    C5A  C 0  1 N N N 52.785 1.108 6.112  6.376  2.609  -1.431 C5A    AZD 26 
AZD C6     C6   C 0  1 N N N 53.237 0.985 8.542  4.471  1.033  -1.222 C6     AZD 27 
AZD HOA2   2HOA H 0  0 N N N 50.525 2.716 7.288  -3.972 -2.037 -0.720 HOA2   AZD 28 
AZD HOB2   2HOB H 0  0 N N N 48.835 6.957 10.233 -6.659 -0.094 -0.391 HOB2   AZD 29 
AZD HOB3   3HOB H 0  0 N N N 48.872 5.537 12.399 ?      ?      ?      HOB3   AZD 30 
AZD "H5'1" 1H5* H 0  0 N N N 49.439 1.829 11.587 -1.305 -2.117 0.187  "H5'1" AZD 31 
AZD "H5'2" 2H5* H 0  0 N N N 49.711 0.163 11.314 -0.673 -0.580 0.825  "H5'2" AZD 32 
AZD "H4'"  H4*  H 0  1 N N N 51.198 0.853 13.214 0.313  -1.875 -1.765 "H4'"  AZD 33 
AZD "H3'"  H3*  H 0  1 N N N 51.438 3.382 12.241 1.307  -2.051 1.135  "H3'"  AZD 34 
AZD "H2'1" 1H2* H 0  0 N N N 53.140 3.269 10.605 3.155  -2.658 -1.179 "H2'1" AZD 35 
AZD "H2'2" 2H2* H 0  0 N N N 54.202 3.082 11.872 3.520  -1.844 0.375  "H2'2" AZD 36 
AZD "H1'"  H1*  H 0  1 N N N 54.404 0.785 11.664 2.830  -0.622 -2.183 "H1'"  AZD 37 
AZD HN3    HN3  H 0  1 N N N 56.816 0.172 7.976  3.924  1.911  2.335  HN3    AZD 38 
AZD H51    1H5  H 0  1 N N N 51.708 1.333 6.295  5.993  3.513  -1.906 H51    AZD 39 
AZD H52    2H5  H 0  1 N N N 53.198 1.877 5.419  7.196  2.869  -0.762 H52    AZD 40 
AZD H53    3H5  H 0  1 N N N 52.856 0.189 5.484  6.735  1.921  -2.196 H53    AZD 41 
AZD H6     H6   H 0  1 N N N 52.169 1.232 8.665  4.615  0.763  -2.257 H6     AZD 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AZD PA    O1A    DOUB N N 1  
AZD PA    O2A    SING N N 2  
AZD PA    O3A    SING N N 3  
AZD PA    "O5'"  SING N N 4  
AZD O2A   HOA2   SING N N 5  
AZD O3A   PB     SING N N 6  
AZD PB    O1B    DOUB N N 7  
AZD PB    O2B    SING N N 8  
AZD PB    O3B    SING N N 9  
AZD O2B   HOB2   SING N N 10 
AZD O3B   HOB3   SING N N 11 
AZD "O5'" "C5'"  SING N N 12 
AZD "C5'" "C4'"  SING N N 13 
AZD "C5'" "H5'1" SING N N 14 
AZD "C5'" "H5'2" SING N N 15 
AZD "C4'" "O4'"  SING N N 16 
AZD "C4'" "C3'"  SING N N 17 
AZD "C4'" "H4'"  SING N N 18 
AZD "O4'" "C1'"  SING N N 19 
AZD "C3'" "N3'"  SING N N 20 
AZD "C3'" "C2'"  SING N N 21 
AZD "C3'" "H3'"  SING N N 22 
AZD "N3'" "N4'"  DOUB N N 23 
AZD "N4'" "N5'"  DOUB N N 24 
AZD "C2'" "C1'"  SING N N 25 
AZD "C2'" "H2'1" SING N N 26 
AZD "C2'" "H2'2" SING N N 27 
AZD "C1'" N1     SING N N 28 
AZD "C1'" "H1'"  SING N N 29 
AZD N1    C2     SING N N 30 
AZD N1    C6     SING N N 31 
AZD C2    O2     DOUB N N 32 
AZD C2    N3     SING N N 33 
AZD N3    C4     SING N N 34 
AZD N3    HN3    SING N N 35 
AZD C4    O4     DOUB N N 36 
AZD C4    C5     SING N N 37 
AZD C5    C5A    SING N N 38 
AZD C5    C6     DOUB N N 39 
AZD C5A   H51    SING N N 40 
AZD C5A   H52    SING N N 41 
AZD C5A   H53    SING N N 42 
AZD C6    H6     SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AZD SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(=C1)C)CC2/N=[N+]=[N-]"                                                                                                            
AZD SMILES_CANONICAL CACTVS               3.341 "CC1=CN([C@H]2C[C@H](N=[N+]=[N-])[C@@H](CO[P@@](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                          
AZD SMILES           CACTVS               3.341 "CC1=CN([CH]2C[CH](N=[N+]=[N-])[CH](CO[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                
AZD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@](=O)(O)OP(=O)(O)O)N=[N+]=[N-]"                                                                                             
AZD SMILES           "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)O)N=[N+]=[N-]"                                                                                                             
AZD InChI            InChI                1.03  "InChI=1S/C10H15N5O10P2/c1-5-3-15(10(17)12-9(5)16)8-2-6(13-14-11)7(24-8)4-23-27(21,22)25-26(18,19)20/h3,6-8H,2,4H2,1H3,(H,21,22)(H,12,16,17)(H2,18,19,20)/t6-,7+,8+/m0/s1" 
AZD InChIKey         InChI                1.03  QOYVAFWJURKBJG-XLPZGREQSA-N                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AZD "SYSTEMATIC NAME" ACDLabs              10.04 
;3'-azido-3'-deoxythymidine 5'-(trihydrogen diphosphate)
;
AZD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,5R)-3-azido-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AZD "Create component"  1999-07-08 RCSB 
AZD "Modify descriptor" 2011-06-04 RCSB 
# 
