data_A9D
# 
_chem_comp.id                                    A9D 
_chem_comp.name                                  "(2S)-2-amino-2-carboxyethyl 1-carboxy-L-prolyl-L-prolinate" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C14 H21 N3 O7" 
_chem_comp.mon_nstd_parent_comp_id               SER 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-11 
_chem_comp.pdbx_modified_date                    2011-12-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        343.332 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A9D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3IVM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A9D C    C    C 0 1 N N N 7.964  93.123  52.427 5.784  -1.083 0.335  C    A9D 1  
A9D N    N    N 0 1 N N N 10.156 92.616  51.611 4.805  -0.572 -1.830 N    A9D 2  
A9D O    O    O 0 1 N N N 7.386  92.028  52.317 6.105  -2.149 -0.134 O    A9D 3  
A9D C1   C1   C 0 1 N N N 8.822  96.063  54.540 1.250  0.611  -0.052 C1   A9D 4  
A9D O2   O2   O 0 1 N N N 8.556  96.823  53.631 0.891  -0.155 0.810  O2   A9D 5  
A9D C3   C3   C 0 1 N N S 8.330  96.320  55.977 0.262  1.566  -0.670 C3   A9D 6  
A9D C4   C4   C 0 1 N N N 7.185  95.356  56.322 0.701  3.021  -0.403 C4   A9D 7  
A9D C5   C5   C 0 1 N N N 5.933  96.100  55.771 -0.644 3.747  -0.137 C5   A9D 8  
A9D C6   C6   C 0 1 N N N 6.281  97.580  56.033 -1.447 2.650  0.606  C6   A9D 9  
A9D N7   N7   N 0 1 N N N 7.750  97.683  56.155 -1.060 1.389  -0.050 N7   A9D 10 
A9D C8   C8   C 0 1 N N N 8.452  98.828  56.392 -1.795 0.260  -0.079 C8   A9D 11 
A9D O9   O9   O 0 1 N N N 9.657  98.782  56.484 -1.376 -0.723 -0.652 O9   A9D 12 
A9D CA   CA   C 0 1 N N S 9.382  93.141  52.748 4.828  -0.189 -0.412 CA   A9D 13 
A9D CB   CB   C 0 1 N N N 9.856  94.581  53.123 3.425  -0.336 0.179  CB   A9D 14 
A9D OG   OG   O 0 1 N N N 9.481  94.980  54.460 2.529  0.611  -0.460 OG   A9D 15 
A9D C10  C10  C 0 1 N N S 7.753  100.170 56.536 -3.139 0.219  0.602  C10  A9D 16 
A9D C11  C11  C 0 1 N N N 7.588  100.803 55.135 -2.953 0.007  2.119  C11  A9D 17 
A9D C12  C12  C 0 1 N N N 8.778  101.787 55.043 -4.122 -0.946 2.483  C12  A9D 18 
A9D C13  C13  C 0 1 N N N 8.836  102.319 56.495 -4.206 -1.833 1.216  C13  A9D 19 
A9D N14  N14  N 0 1 N N N 8.538  101.152 57.357 -3.922 -0.918 0.095  N14  A9D 20 
A9D C15  C15  C 0 1 N N N 8.912  101.017 58.668 -4.315 -1.094 -1.182 C15  A9D 21 
A9D O16  O16  O 0 1 N N N 8.605  100.007 59.294 -4.023 -0.271 -2.026 O16  A9D 22 
A9D O17  O17  O 0 1 N N N 9.657  102.054 59.312 -5.031 -2.182 -1.522 O17  A9D 23 
A9D OXT  O7   O 0 1 N Y N 7.246  94.346  52.240 6.275  -0.698 1.523  O7   A9D 24 
A9D HN   HN   H 0 1 N N N 11.130 92.630  51.836 4.506  -1.529 -1.941 HN   A9D 25 
A9D HNA  HNA  H 0 1 N Y N 9.872  91.677  51.420 4.221  0.054  -2.364 HNA  A9D 26 
A9D H3   H3   H 0 1 N N N 9.215  96.191  56.617 0.197  1.389  -1.744 H3   A9D 27 
A9D H4   H4   H 0 1 N N N 7.320  94.374  55.844 1.348  3.074  0.472  H4   A9D 28 
A9D H4A  H4A  H 0 1 N N N 7.112  95.180  57.405 1.199  3.440  -1.278 H4A  A9D 29 
A9D H5   H5   H 0 1 N N N 5.776  95.900  54.701 -0.497 4.621  0.498  H5   A9D 30 
A9D H5A  H5A  H 0 1 N N N 5.014  95.797  56.293 -1.132 4.023  -1.072 H5A  A9D 31 
A9D H6   H6   H 0 1 N N N 5.927  98.204  55.199 -1.173 2.629  1.661  H6   A9D 32 
A9D H6A  H6A  H 0 1 N N N 5.801  97.922  56.962 -2.518 2.823  0.495  H6A  A9D 33 
A9D HA   HA   H 0 1 N N N 9.552  92.498  53.624 5.154  0.848  -0.320 HA   A9D 34 
A9D HB   HB   H 0 1 N N N 10.953 94.610  53.051 3.063  -1.350 0.009  HB   A9D 35 
A9D HBA  HBA  H 0 1 N N N 9.400  95.288  52.414 3.459  -0.137 1.251  HBA  A9D 36 
A9D H10  H10  H 0 1 N N N 6.792  99.972  57.034 -3.675 1.151  0.421  H10  A9D 37 
A9D H11  H11  H 0 1 N N N 7.630  100.043 54.341 -1.992 -0.464 2.328  H11  A9D 38 
A9D H11A H11A H 0 0 N N N 6.624  101.325 55.038 -3.045 0.952  2.655  H11A A9D 39 
A9D H12  H12  H 0 1 N N N 9.711  101.289 54.742 -3.880 -1.543 3.362  H12  A9D 40 
A9D H12A H12A H 0 0 N N N 8.603  102.588 54.310 -5.047 -0.390 2.633  H12A A9D 41 
A9D H13  H13  H 0 1 N N N 9.832  102.728 56.722 -3.459 -2.626 1.257  H13  A9D 42 
A9D H13A H13A H 0 0 N N N 8.095  103.118 56.648 -5.206 -2.257 1.115  H13A A9D 43 
A9D H20  H20  H 0 1 N N N 9.831  101.807 60.213 -5.290 -2.265 -2.450 H20  A9D 44 
A9D HXT  H21  H 0 1 N Y N 6.338  94.153  52.037 6.881  -1.307 1.967  H21  A9D 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A9D C   O    DOUB N N 1  
A9D C   CA   SING N N 2  
A9D C   OXT  SING N N 3  
A9D N   CA   SING N N 4  
A9D N   HN   SING N N 5  
A9D N   HNA  SING N N 6  
A9D C1  O2   DOUB N N 7  
A9D C1  C3   SING N N 8  
A9D C1  OG   SING N N 9  
A9D C3  C4   SING N N 10 
A9D C3  N7   SING N N 11 
A9D C3  H3   SING N N 12 
A9D C4  C5   SING N N 13 
A9D C4  H4   SING N N 14 
A9D C4  H4A  SING N N 15 
A9D C5  C6   SING N N 16 
A9D C5  H5   SING N N 17 
A9D C5  H5A  SING N N 18 
A9D C6  N7   SING N N 19 
A9D C6  H6   SING N N 20 
A9D C6  H6A  SING N N 21 
A9D N7  C8   SING N N 22 
A9D C8  O9   DOUB N N 23 
A9D C8  C10  SING N N 24 
A9D CA  CB   SING N N 25 
A9D CA  HA   SING N N 26 
A9D CB  OG   SING N N 27 
A9D CB  HB   SING N N 28 
A9D CB  HBA  SING N N 29 
A9D C10 C11  SING N N 30 
A9D C10 N14  SING N N 31 
A9D C10 H10  SING N N 32 
A9D C11 C12  SING N N 33 
A9D C11 H11  SING N N 34 
A9D C11 H11A SING N N 35 
A9D C12 C13  SING N N 36 
A9D C12 H12  SING N N 37 
A9D C12 H12A SING N N 38 
A9D C13 N14  SING N N 39 
A9D C13 H13  SING N N 40 
A9D C13 H13A SING N N 41 
A9D N14 C15  SING N N 42 
A9D C15 O16  DOUB N N 43 
A9D C15 O17  SING N N 44 
A9D O17 H20  SING N N 45 
A9D OXT HXT  SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A9D SMILES           ACDLabs              12.01 "O=C(N1C(C(=O)OCC(C(=O)O)N)CCC1)C2N(C(=O)O)CCC2"                                                                                               
A9D SMILES_CANONICAL CACTVS               3.370 "N[C@@H](COC(=O)[C@@H]1CCCN1C(=O)[C@@H]2CCCN2C(O)=O)C(O)=O"                                                                                    
A9D SMILES           CACTVS               3.370 "N[CH](COC(=O)[CH]1CCCN1C(=O)[CH]2CCCN2C(O)=O)C(O)=O"                                                                                          
A9D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1C[C@H](N(C1)C(=O)[C@@H]2CCCN2C(=O)O)C(=O)OC[C@@H](C(=O)O)N"                                                                                 
A9D SMILES           "OpenEye OEToolkits" 1.7.0 "C1CC(N(C1)C(=O)C2CCCN2C(=O)O)C(=O)OCC(C(=O)O)N"                                                                                               
A9D InChI            InChI                1.03  "InChI=1S/C14H21N3O7/c15-8(12(19)20)7-24-13(21)10-4-2-5-16(10)11(18)9-3-1-6-17(9)14(22)23/h8-10H,1-7,15H2,(H,19,20)(H,22,23)/t8-,9-,10-/m0/s1" 
A9D InChIKey         InChI                1.03  XVGHKAKDPMMTJO-GUBZILKMSA-N                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A9D "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-amino-2-carboxyethyl 1-carboxy-L-prolyl-L-prolinate"                                                          
A9D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-[(2S)-2-[(2S)-2-azanyl-3-hydroxy-3-oxo-propoxy]carbonylpyrrolidin-1-yl]carbonylpyrrolidine-1-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A9D "Create component"   2009-09-11 RCSB 
A9D "Modify descriptor"  2011-06-04 RCSB 
A9D "Obsolete component" 2011-12-12 RCSB 
# 
