data_A6D
# 
_chem_comp.id                                    A6D 
_chem_comp.name                                  "(2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-{[(3-nitrobenzyl)disulfanyl]methyl}tetrahydrofuran-3,4-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H18 N6 O5 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-08-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        450.492 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A6D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3IOD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A6D N1   N1   N 0  1 Y N N -1.439 -8.558  41.936 -7.501 0.723  1.120  N1   A6D 1  
A6D C2   C2   C 0  1 Y N N -1.581 -7.673  40.940 -6.909 -0.443 1.308  C2   A6D 2  
A6D N3   N3   N 0  1 Y N N -1.194 -7.963  39.703 -5.660 -0.665 0.960  N3   A6D 3  
A6D C4   C4   C 0  1 Y N N -0.625 -9.162  39.436 -4.933 0.293  0.394  C4   A6D 4  
A6D C5   C5   C 0  1 Y N N -0.454 -10.113 40.448 -5.517 1.552  0.172  C5   A6D 5  
A6D C6   C6   C 0  1 Y N N -0.877 -9.767  41.730 -6.854 1.741  0.562  C6   A6D 6  
A6D N6   N6   N 0  1 N N N -0.735 -10.604 42.756 -7.482 2.959  0.368  N6   A6D 7  
A6D N7   N7   N 0  1 Y N N 0.122  -11.204 39.902 -4.574 2.333  -0.407 N7   A6D 8  
A6D C8   C8   C 0  1 Y N N 0.319  -10.939 38.606 -3.475 1.650  -0.552 C8   A6D 9  
A6D N9   N9   N 0  1 Y N N -0.148 -9.708  38.325 -3.646 0.386  -0.072 N9   A6D 10 
A6D OAB  OAB  O 0  1 N N N 1.402  -10.691 26.775 7.194  2.957  -0.797 OAB  A6D 11 
A6D OAC  OAC  O 0  1 N N N 0.507  -7.235  34.962 -1.067 -3.286 -1.655 OAC  A6D 12 
A6D OAD  OAD  O 0  1 N N N 1.989  -7.803  37.274 -3.486 -2.729 -1.086 OAD  A6D 13 
A6D OAE  OAE  O -1 1 N N N 2.901  -12.534 26.246 5.562  2.240  -1.926 OAE  A6D 14 
A6D CAF  CAF  C 0  1 Y N N 5.203  -11.635 29.593 6.867  -0.173 1.931  CAF  A6D 15 
A6D CAG  CAG  C 0  1 Y N N 4.724  -10.734 30.551 5.867  -1.106 1.732  CAG  A6D 16 
A6D CAH  CAH  C 0  1 Y N N 4.458  -11.870 28.433 7.013  0.882  1.050  CAH  A6D 17 
A6D CAK  CAK  C 0  1 Y N N 2.751  -10.319 29.182 5.159  0.069  -0.230 CAK  A6D 18 
A6D CAL  CAL  C 0  1 N N N 3.023  -9.129  31.413 3.923  -2.003 0.435  CAL  A6D 19 
A6D CAM  CAM  C 0  1 N N N 0.730  -10.982 34.331 0.841  -0.611 -1.140 CAM  A6D 20 
A6D OAQ  OAQ  O 0  1 N N N -0.661 -9.911  36.022 -1.311 -0.116 -0.096 OAQ  A6D 21 
A6D SAR  SAR  S 0  1 N N N 1.251  -9.306  31.727 2.419  -1.471 1.297  SAR  A6D 22 
A6D SAS  SAS  S 0  1 N N N 0.931  -11.170 32.524 1.805  0.147  0.197  SAS  A6D 23 
A6D CAT  CAT  C 0  1 Y N N 3.498  -10.095 30.344 5.013  -0.985 0.652  CAT  A6D 24 
A6D CAV  CAV  C 0  1 Y N N 3.239  -11.224 28.219 6.159  1.003  -0.031 CAV  A6D 25 
A6D CAY  CAY  C 0  1 N N S 1.098  -8.547  35.113 -1.276 -1.873 -1.685 CAY  A6D 26 
A6D CAZ  CAZ  C 0  1 N N R 1.326  -8.869  36.582 -2.744 -1.535 -1.340 CAZ  A6D 27 
A6D CBA  CBA  C 0  1 N N S 0.063  -9.633  34.774 -0.460 -1.181 -0.571 CBA  A6D 28 
A6D CBB  CBB  C 0  1 N N R -0.125 -9.042  37.032 -2.640 -0.679 -0.058 CBB  A6D 29 
A6D NBD  NBD  N 1  1 N N N 2.535  -11.474 27.104 6.314  2.134  -0.973 NBD  A6D 30 
A6D H2   H2   H 0  1 N N N -2.018 -6.707  41.147 -7.472 -1.243 1.766  H2   A6D 31 
A6D HN6  HN6  H 0  1 N N N -1.093 -10.178 43.587 -8.405 3.077  0.641  HN6  A6D 32 
A6D HN6A HN6A H 0  0 N N N -1.239 -11.447 42.570 -6.999 3.694  -0.040 HN6A A6D 33 
A6D H8   H8   H 0  1 N N N 0.781  -11.608 37.895 -2.563 2.030  -0.987 H8   A6D 34 
A6D HOAC HOAC H 0  0 N N N 0.372  -7.052  34.040 -1.602 -3.776 -2.295 HOAC A6D 35 
A6D HOAD HOAD H 0  0 N N N 2.111  -8.044  38.185 -3.532 -3.332 -1.841 HOAD A6D 36 
A6D HAF  HAF  H 0  1 N N N 6.142  -12.145 29.749 7.532  -0.266 2.777  HAF  A6D 37 
A6D HAG  HAG  H 0  1 N N N 5.298  -10.534 31.444 5.753  -1.930 2.421  HAG  A6D 38 
A6D HAH  HAH  H 0  1 N N N 4.831  -12.561 27.692 7.794  1.611  1.205  HAH  A6D 39 
A6D HAK  HAK  H 0  1 N N N 1.814  -9.805  29.026 4.493  0.163  -1.074 HAK  A6D 40 
A6D HAL  HAL  H 0  1 N N N 3.222  -8.101  31.076 4.244  -2.968 0.827  HAL  A6D 41 
A6D HALA HALA H 0  0 N N N 3.570  -9.335  32.345 3.718  -2.094 -0.632 HALA A6D 42 
A6D HAM  HAM  H 0  1 N N N 0.093  -11.805 34.687 0.609  0.143  -1.892 HAM  A6D 43 
A6D HAMA HAMA H 0  0 N N N 1.729  -11.030 34.788 1.421  -1.413 -1.596 HAMA A6D 44 
A6D HAY  HAY  H 0  1 N N N 2.004  -8.536  34.489 -1.011 -1.469 -2.662 HAY  A6D 45 
A6D HAZ  HAZ  H 0  1 N N N 1.979  -9.733  36.776 -3.204 -0.964 -2.146 HAZ  A6D 46 
A6D HBA  HBA  H 0  1 N N N -0.571 -9.274  33.950 -0.245 -1.883 0.235  HBA  A6D 47 
A6D HBB  HBB  H 0  1 N N N -0.681 -8.099  37.140 -2.762 -1.303 0.828  HBB  A6D 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A6D N1  C2   DOUB Y N 1  
A6D N1  C6   SING Y N 2  
A6D C2  N3   SING Y N 3  
A6D C2  H2   SING N N 4  
A6D N3  C4   DOUB Y N 5  
A6D C4  C5   SING Y N 6  
A6D C4  N9   SING Y N 7  
A6D C5  C6   DOUB Y N 8  
A6D C5  N7   SING Y N 9  
A6D C6  N6   SING N N 10 
A6D N6  HN6  SING N N 11 
A6D N6  HN6A SING N N 12 
A6D N7  C8   DOUB Y N 13 
A6D C8  N9   SING Y N 14 
A6D C8  H8   SING N N 15 
A6D N9  CBB  SING N N 16 
A6D OAB NBD  DOUB N N 17 
A6D OAC CAY  SING N N 18 
A6D OAC HOAC SING N N 19 
A6D OAD CAZ  SING N N 20 
A6D OAD HOAD SING N N 21 
A6D OAE NBD  SING N N 22 
A6D CAF CAG  DOUB Y N 23 
A6D CAF CAH  SING Y N 24 
A6D CAF HAF  SING N N 25 
A6D CAG CAT  SING Y N 26 
A6D CAG HAG  SING N N 27 
A6D CAH CAV  DOUB Y N 28 
A6D CAH HAH  SING N N 29 
A6D CAK CAT  DOUB Y N 30 
A6D CAK CAV  SING Y N 31 
A6D CAK HAK  SING N N 32 
A6D CAL SAR  SING N N 33 
A6D CAL CAT  SING N N 34 
A6D CAL HAL  SING N N 35 
A6D CAL HALA SING N N 36 
A6D CAM SAS  SING N N 37 
A6D CAM CBA  SING N N 38 
A6D CAM HAM  SING N N 39 
A6D CAM HAMA SING N N 40 
A6D OAQ CBA  SING N N 41 
A6D OAQ CBB  SING N N 42 
A6D SAR SAS  SING N N 43 
A6D CAV NBD  SING N N 44 
A6D CAY CAZ  SING N N 45 
A6D CAY CBA  SING N N 46 
A6D CAY HAY  SING N N 47 
A6D CAZ CBB  SING N N 48 
A6D CAZ HAZ  SING N N 49 
A6D CBA HBA  SING N N 50 
A6D CBB HBB  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A6D SMILES           ACDLabs              11.02 "[O-][N+](=O)c1cccc(c1)CSSCC4OC(n3cnc2c(ncnc23)N)C(O)C4O"                                                                                                                                   
A6D SMILES_CANONICAL CACTVS               3.352 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSSCc4cccc(c4)[N+]([O-])=O)[C@@H](O)[C@H]3O"                                                                                                                 
A6D SMILES           CACTVS               3.352 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSSCc4cccc(c4)[N+]([O-])=O)[CH](O)[CH]3O"                                                                                                                       
A6D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(cc(c1)[N+](=O)[O-])CSSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"                                                                                                               
A6D SMILES           "OpenEye OEToolkits" 1.7.0 "c1cc(cc(c1)[N+](=O)[O-])CSSCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                 
A6D InChI            InChI                1.03  "InChI=1S/C17H18N6O5S2/c18-15-12-16(20-7-19-15)22(8-21-12)17-14(25)13(24)11(28-17)6-30-29-5-9-2-1-3-10(4-9)23(26)27/h1-4,7-8,11,13-14,17,24-25H,5-6H2,(H2,18,19,20)/t11-,13-,14-,17-/m1/s1" 
A6D InChIKey         InChI                1.03  UWYQTICCMFSWOE-LSCFUAHRSA-N                                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A6D "SYSTEMATIC NAME" ACDLabs              11.02 "(2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-{[(3-nitrobenzyl)disulfanyl]methyl}tetrahydrofuran-3,4-diol (non-preferred name)" 
A6D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R,3R,4S,5S)-2-(6-aminopurin-9-yl)-5-[(3-nitrophenyl)methyldisulfanylmethyl]oxolane-3,4-diol"                              
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A6D "Create component"  2009-08-19 RCSB 
A6D "Modify descriptor" 2011-06-04 RCSB 
# 
