data_A5D
# 
_chem_comp.id                                    A5D 
_chem_comp.name                                  "(2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-[(benzyldisulfanyl)methyl]tetrahydrofuran-3,4-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H19 N5 O3 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-08-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        405.494 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A5D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3IOC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A5D N1   N1   N 0 1 Y N N -1.273 -9.094  41.890 -6.810 0.699  1.125  N1   A5D 1  
A5D C2   C2   C 0 1 Y N N -1.423 -8.152  40.941 -6.091 -0.281 1.643  C2   A5D 2  
A5D N3   N3   N 0 1 Y N N -1.082 -8.405  39.694 -4.842 -0.503 1.291  N3   A5D 3  
A5D C4   C4   C 0 1 Y N N -0.569 -9.613  39.376 -4.247 0.264  0.383  C4   A5D 4  
A5D C5   C5   C 0 1 Y N N -0.394 -10.617 40.310 -4.970 1.320  -0.198 C5   A5D 5  
A5D C6   C6   C 0 1 Y N N -0.778 -10.320 41.627 -6.300 1.518  0.211  C6   A5D 6  
A5D N6   N6   N 0 1 N N N -0.695 -11.195 42.642 -7.061 2.541  -0.327 N6   A5D 7  
A5D N7   N7   N 0 1 Y N N 0.126  -11.681 39.664 -4.142 1.935  -1.076 N7   A5D 8  
A5D C8   C8   C 0 1 Y N N 0.295  -11.351 38.389 -2.985 1.338  -1.071 C8   A5D 9  
A5D N9   N9   N 0 1 Y N N -0.145 -10.086 38.239 -3.000 0.301  -0.187 N9   A5D 10 
A5D OAB  OAB  O 0 1 N N N 0.600  -7.466  34.684 -0.125 -3.461 -0.657 OAB  A5D 11 
A5D OAC  OAC  O 0 1 N N N 2.106  -8.226  36.997 -2.560 -2.948 -0.116 OAC  A5D 12 
A5D CAD  CAD  C 0 1 Y N N 3.287  -9.757  27.544 7.589  2.036  -0.137 CAD  A5D 13 
A5D CAE  CAE  C 0 1 Y N N 1.996  -10.068 27.988 7.595  1.335  1.054  CAE  A5D 14 
A5D CAF  CAF  C 0 1 Y N N 4.275  -9.461  28.478 6.678  1.713  -1.125 CAF  A5D 15 
A5D CAG  CAG  C 0 1 Y N N 1.705  -10.075 29.353 6.690  0.309  1.257  CAG  A5D 16 
A5D CAH  CAH  C 0 1 Y N N 3.993  -9.478  29.842 5.773  0.688  -0.922 CAH  A5D 17 
A5D CAK  CAK  C 0 1 N N N 2.389  -9.817  31.798 4.794  -1.133 0.489  CAK  A5D 18 
A5D CAL  CAL  C 0 1 N N N -0.687 -10.601 33.978 1.513  -0.619 -1.212 CAL  A5D 19 
A5D OAP  OAP  O 0 1 N N N -0.839 -10.152 36.208 -0.629 0.018  -0.227 OAP  A5D 20 
A5D SAQ  SAQ  S 0 1 N N N 1.567  -11.423 32.142 3.283  -0.468 1.240  SAQ  A5D 21 
A5D SAR  SAR  S 0 1 N N N 0.910  -11.408 34.077 2.453  0.624  -0.283 SAR  A5D 22 
A5D CAS  CAS  C 0 1 Y N N 2.706  -9.783  30.290 5.780  -0.014 0.268  CAS  A5D 23 
A5D CAW  CAW  C 0 1 N N S 0.787  -8.856  34.940 -0.482 -2.163 -1.138 CAW  A5D 24 
A5D CAX  CAX  C 0 1 N N R 1.228  -9.177  36.377 -1.960 -1.852 -0.810 CAX  A5D 25 
A5D CAY  CAY  C 0 1 N N S -0.637 -9.473  34.941 0.308  -1.070 -0.385 CAY  A5D 26 
A5D CAZ  CAZ  C 0 1 N N R -0.161 -9.278  37.069 -1.888 -0.608 0.102  CAZ  A5D 27 
A5D H2   H2   H 0 1 N N N -1.825 -7.184  41.203 -6.545 -0.923 2.383  H2   A5D 28 
A5D HN6  HN6  H 0 1 N N N -1.035 -10.768 43.480 -7.978 2.667  -0.037 HN6  A5D 29 
A5D HN6A HN6A H 0 0 N N N -1.247 -12.002 42.432 -6.678 3.132  -0.993 HN6A A5D 30 
A5D H8   H8   H 0 1 N N N 0.709  -11.980 37.615 -2.139 1.623  -1.679 H8   A5D 31 
A5D HOAB HOAB H 0 0 N N N 0.329  -7.343  33.782 -0.633 -4.181 -1.053 HOAB A5D 32 
A5D HOAC HOAC H 0 0 N N N 2.317  -8.516  37.877 -2.576 -3.772 -0.622 HOAC A5D 33 
A5D HAD  HAD  H 0 1 N N N 3.513  -9.747  26.488 8.293  2.840  -0.293 HAD  A5D 34 
A5D HAE  HAE  H 0 1 N N N 1.223  -10.303 27.272 8.307  1.587  1.826  HAE  A5D 35 
A5D HAF  HAF  H 0 1 N N N 5.271  -9.215  28.142 6.673  2.262  -2.055 HAF  A5D 36 
A5D HAG  HAG  H 0 1 N N N 0.705  -10.306 29.689 6.695  -0.239 2.187  HAG  A5D 37 
A5D HAH  HAH  H 0 1 N N N 4.772  -9.255  30.555 5.062  0.435  -1.694 HAH  A5D 38 
A5D HAK  HAK  H 0 1 N N N 1.723  -8.983  32.066 5.233  -1.878 1.153  HAK  A5D 39 
A5D HAKA HAKA H 0 0 N N N 3.316  -9.730  32.384 4.551  -1.596 -0.467 HAKA A5D 40 
A5D HAL  HAL  H 0 1 N N N -0.872 -10.232 32.958 1.169  -0.187 -2.151 HAL  A5D 41 
A5D HALA HALA H 0 0 N N N -1.492 -11.302 34.243 2.153  -1.477 -1.419 HALA A5D 42 
A5D HAW  HAW  H 0 1 N N N 1.525  -9.213  34.207 -0.306 -2.094 -2.212 HAW  A5D 43 
A5D HAX  HAX  H 0 1 N N N 1.861  -10.075 36.441 -2.514 -1.629 -1.722 HAX  A5D 44 
A5D HAY  HAY  H 0 1 N N N -1.357 -8.670  34.725 0.632  -1.436 0.589  HAY  A5D 45 
A5D HAZ  HAZ  H 0 1 N N N -0.539 -8.267  37.281 -1.903 -0.903 1.151  HAZ  A5D 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A5D N1  C2   DOUB Y N 1  
A5D N1  C6   SING Y N 2  
A5D C2  N3   SING Y N 3  
A5D N3  C4   DOUB Y N 4  
A5D C4  C5   SING Y N 5  
A5D C4  N9   SING Y N 6  
A5D C5  C6   DOUB Y N 7  
A5D C5  N7   SING Y N 8  
A5D C6  N6   SING N N 9  
A5D N7  C8   DOUB Y N 10 
A5D C8  N9   SING Y N 11 
A5D N9  CAZ  SING N N 12 
A5D OAB CAW  SING N N 13 
A5D OAC CAX  SING N N 14 
A5D CAD CAE  DOUB Y N 15 
A5D CAD CAF  SING Y N 16 
A5D CAE CAG  SING Y N 17 
A5D CAF CAH  DOUB Y N 18 
A5D CAG CAS  DOUB Y N 19 
A5D CAH CAS  SING Y N 20 
A5D CAK SAQ  SING N N 21 
A5D CAK CAS  SING N N 22 
A5D CAL SAR  SING N N 23 
A5D CAL CAY  SING N N 24 
A5D OAP CAY  SING N N 25 
A5D OAP CAZ  SING N N 26 
A5D SAQ SAR  SING N N 27 
A5D CAW CAX  SING N N 28 
A5D CAW CAY  SING N N 29 
A5D CAX CAZ  SING N N 30 
A5D C2  H2   SING N N 31 
A5D N6  HN6  SING N N 32 
A5D N6  HN6A SING N N 33 
A5D C8  H8   SING N N 34 
A5D OAB HOAB SING N N 35 
A5D OAC HOAC SING N N 36 
A5D CAD HAD  SING N N 37 
A5D CAE HAE  SING N N 38 
A5D CAF HAF  SING N N 39 
A5D CAG HAG  SING N N 40 
A5D CAH HAH  SING N N 41 
A5D CAK HAK  SING N N 42 
A5D CAK HAKA SING N N 43 
A5D CAL HAL  SING N N 44 
A5D CAL HALA SING N N 45 
A5D CAW HAW  SING N N 46 
A5D CAX HAX  SING N N 47 
A5D CAY HAY  SING N N 48 
A5D CAZ HAZ  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A5D SMILES           ACDLabs              11.02 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CSSCc4ccccc4)N"                                                                                                                                       
A5D SMILES_CANONICAL CACTVS               3.352 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSSCc4ccccc4)[C@@H](O)[C@H]3O"                                                                                                                       
A5D SMILES           CACTVS               3.352 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSSCc4ccccc4)[CH](O)[CH]3O"                                                                                                                             
A5D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CSSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"                                                                                                                     
A5D SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CSSCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                       
A5D InChI            InChI                1.03  "InChI=1S/C17H19N5O3S2/c18-15-12-16(20-8-19-15)22(9-21-12)17-14(24)13(23)11(25-17)7-27-26-6-10-4-2-1-3-5-10/h1-5,8-9,11,13-14,17,23-24H,6-7H2,(H2,18,19,20)/t11-,13-,14-,17-/m1/s1" 
A5D InChIKey         InChI                1.03  DBQUNXDCOIKHGM-LSCFUAHRSA-N                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A5D "SYSTEMATIC NAME" ACDLabs              11.02 "(2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-[(benzyldisulfanyl)methyl]tetrahydrofuran-3,4-diol (non-preferred name)" 
A5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R,3R,4S,5S)-2-(6-aminopurin-9-yl)-5-(phenylmethyldisulfanylmethyl)oxolane-3,4-diol"                              
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A5D "Create component"     2009-08-19 RCSB 
A5D "Modify aromatic_flag" 2011-06-04 RCSB 
A5D "Modify descriptor"    2011-06-04 RCSB 
# 
