data_9ZD
# 
_chem_comp.id                                    9ZD 
_chem_comp.name                                  "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[(2~{R})-1-methoxy-1-oxidanylidene-propan-2-yl]phosphonamidic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H21 N6 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-28 
_chem_comp.pdbx_modified_date                    2017-10-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        432.326 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9ZD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WA9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9ZD O3P   O1  O 0 1 N N N -30.455 3.901 -22.546 3.409  -3.045 -0.993 O3P   9ZD 1  
9ZD P     P1  P 0 1 N N N -31.200 4.015 -23.840 3.194  -2.040 0.246  P     9ZD 2  
9ZD O2P   O2  O 0 1 N N N -32.046 2.849 -24.267 2.894  -2.819 1.468  O2P   9ZD 3  
9ZD "O5'" O3  O 0 1 N N N -30.093 4.363 -24.933 1.966  -1.049 -0.074 "O5'" 9ZD 4  
9ZD "C5'" C1  C 0 1 N N N -30.289 4.085 -26.308 1.392  -0.180 0.905  "C5'" 9ZD 5  
9ZD "C4'" C2  C 0 1 N N R -29.309 4.971 -27.054 0.251  0.619  0.271  "C4'" 9ZD 6  
9ZD "C3'" C3  C 0 1 N N S -29.701 6.458 -27.087 -0.329 1.627  1.288  "C3'" 9ZD 7  
9ZD "O3'" O4  O 0 1 N N N -28.732 7.276 -26.405 0.220  2.929  1.070  "O3'" 9ZD 8  
9ZD "C2'" C4  C 0 1 N N R -29.780 6.766 -28.582 -1.846 1.624  0.996  "C2'" 9ZD 9  
9ZD "O2'" O5  O 0 1 N N N -29.325 8.076 -28.962 -2.281 2.924  0.593  "O2'" 9ZD 10 
9ZD "C1'" C5  C 0 1 N N R -28.923 5.664 -29.184 -2.003 0.614  -0.162 "C1'" 9ZD 11 
9ZD "O4'" O6  O 0 1 N N N -29.247 4.522 -28.405 -0.852 -0.253 -0.057 "O4'" 9ZD 12 
9ZD N9    N1  N 0 1 Y N N -29.229 5.348 -30.587 -3.239 -0.156 -0.002 N9    9ZD 13 
9ZD C4    C6  C 0 1 Y N N -28.295 5.158 -31.503 -4.491 0.221  -0.418 C4    9ZD 14 
9ZD C5    C7  C 0 1 Y N N -29.019 4.847 -32.730 -5.353 -0.826 -0.053 C5    9ZD 15 
9ZD N7    N2  N 0 1 Y N N -30.324 4.891 -32.443 -4.597 -1.772 0.555  N7    9ZD 16 
9ZD C8    C8  C 0 1 Y N N -30.445 5.173 -31.128 -3.355 -1.383 0.582  C8    9ZD 17 
9ZD N3    N3  N 0 1 Y N N -26.948 5.218 -31.490 -4.993 1.285  -1.038 N3    9ZD 18 
9ZD C2    C9  C 0 1 Y N N -26.287 4.965 -32.632 -6.279 1.359  -1.308 C2    9ZD 19 
9ZD N1    N4  N 0 1 Y N N -26.884 4.669 -33.803 -7.127 0.400  -0.985 N1    9ZD 20 
9ZD C6    C10 C 0 1 Y N N -28.220 4.603 -33.933 -6.719 -0.699 -0.359 C6    9ZD 21 
9ZD N6    N5  N 0 1 N N N -28.816 4.322 -35.118 -7.615 -1.698 -0.025 N6    9ZD 22 
9ZD N2    N6  N 0 1 N N N -32.240 5.393 -23.843 4.595  -1.138 0.486  N2    9ZD 23 
9ZD C3    C11 C 0 1 N N R -31.597 6.691 -23.716 4.924  -0.349 -0.709 C3    9ZD 24 
9ZD C7    C12 C 0 1 N N N -32.241 7.687 -24.607 5.527  0.967  -0.292 C7    9ZD 25 
9ZD C9    C13 C 0 1 N N N -31.675 7.199 -22.281 5.929  -1.121 -1.568 C9    9ZD 26 
9ZD O10   O7  O 0 1 N N N -31.631 8.678 -24.971 5.668  1.223  0.881  O10   9ZD 27 
9ZD O11   O8  O 0 1 N N N -33.615 7.497 -24.986 5.908  1.856  -1.222 O11   9ZD 28 
9ZD C12   C14 C 0 1 N N N -34.622 8.337 -24.424 6.480  3.103  -0.748 C12   9ZD 29 
9ZD H1    H1  H 0 1 N N N -30.632 3.055 -22.151 3.610  -2.602 -1.829 H1    9ZD 30 
9ZD H2    H2  H 0 1 N N N -31.322 4.323 -26.603 1.004  -0.773 1.734  H2    9ZD 31 
9ZD H3    H3  H 0 1 N N N -30.083 3.025 -26.517 2.154  0.505  1.275  H3    9ZD 32 
9ZD H4    H4  H 0 1 N N N -28.320 4.881 -26.581 0.603  1.138  -0.620 H4    9ZD 33 
9ZD H5    H5  H 0 1 N N N -30.697 6.580 -26.636 -0.133 1.297  2.308  H5    9ZD 34 
9ZD H6    H6  H 0 1 N N N -28.719 7.049 -25.483 -0.110 3.602  1.681  H6    9ZD 35 
9ZD H7    H7  H 0 1 N N N -30.819 6.623 -28.913 -2.402 1.291  1.872  H7    9ZD 36 
9ZD H8    H8  H 0 1 N N N -29.885 8.733 -28.566 -2.149 3.608  1.263  H8    9ZD 37 
9ZD H9    H9  H 0 1 N N N -27.860 5.925 -29.076 -2.000 1.132  -1.121 H9    9ZD 38 
9ZD H10   H10 H 0 1 N N N -31.380 5.247 -30.592 -2.539 -1.946 1.009  H10   9ZD 39 
9ZD H11   H11 H 0 1 N N N -25.208 5.001 -32.610 -6.654 2.237  -1.813 H11   9ZD 40 
9ZD H12   H12 H 0 1 N N N -28.116 4.185 -35.819 -8.555 -1.601 -0.247 H12   9ZD 41 
9ZD H13   H13 H 0 1 N N N -29.364 3.490 -35.027 -7.305 -2.496 0.432  H13   9ZD 42 
9ZD H14   H14 H 0 1 N N N -32.748 5.388 -24.704 4.508  -0.545 1.298  H14   9ZD 43 
9ZD H15   H15 H 0 1 N N N -30.537 6.599 -23.993 4.017  -0.167 -1.286 H15   9ZD 44 
9ZD H16   H16 H 0 1 N N N -31.201 6.470 -21.607 6.835  -1.303 -0.991 H16   9ZD 45 
9ZD H17   H17 H 0 1 N N N -31.151 8.163 -22.205 5.493  -2.073 -1.870 H17   9ZD 46 
9ZD H18   H18 H 0 1 N N N -32.729 7.330 -21.995 6.173  -0.536 -2.454 H18   9ZD 47 
9ZD H19   H19 H 0 1 N N N -35.605 8.050 -24.825 5.752  3.624  -0.126 H19   9ZD 48 
9ZD H20   H20 H 0 1 N N N -34.625 8.224 -23.330 7.374  2.892  -0.161 H20   9ZD 49 
9ZD H21   H21 H 0 1 N N N -34.412 9.385 -24.684 6.744  3.730  -1.600 H21   9ZD 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9ZD N6    C6    SING N N 1  
9ZD C6    N1    DOUB Y N 2  
9ZD C6    C5    SING Y N 3  
9ZD N1    C2    SING Y N 4  
9ZD C5    N7    SING Y N 5  
9ZD C5    C4    DOUB Y N 6  
9ZD C2    N3    DOUB Y N 7  
9ZD N7    C8    DOUB Y N 8  
9ZD C4    N3    SING Y N 9  
9ZD C4    N9    SING Y N 10 
9ZD C8    N9    SING Y N 11 
9ZD N9    "C1'" SING N N 12 
9ZD "C1'" "C2'" SING N N 13 
9ZD "C1'" "O4'" SING N N 14 
9ZD "O2'" "C2'" SING N N 15 
9ZD "C2'" "C3'" SING N N 16 
9ZD "O4'" "C4'" SING N N 17 
9ZD "C3'" "C4'" SING N N 18 
9ZD "C3'" "O3'" SING N N 19 
9ZD "C4'" "C5'" SING N N 20 
9ZD "C5'" "O5'" SING N N 21 
9ZD O11   C7    SING N N 22 
9ZD O11   C12   SING N N 23 
9ZD O10   C7    DOUB N N 24 
9ZD "O5'" P     SING N N 25 
9ZD C7    C3    SING N N 26 
9ZD O2P   P     DOUB N N 27 
9ZD N2    P     SING N N 28 
9ZD N2    C3    SING N N 29 
9ZD P     O3P   SING N N 30 
9ZD C3    C9    SING N N 31 
9ZD O3P   H1    SING N N 32 
9ZD "C5'" H2    SING N N 33 
9ZD "C5'" H3    SING N N 34 
9ZD "C4'" H4    SING N N 35 
9ZD "C3'" H5    SING N N 36 
9ZD "O3'" H6    SING N N 37 
9ZD "C2'" H7    SING N N 38 
9ZD "O2'" H8    SING N N 39 
9ZD "C1'" H9    SING N N 40 
9ZD C8    H10   SING N N 41 
9ZD C2    H11   SING N N 42 
9ZD N6    H12   SING N N 43 
9ZD N6    H13   SING N N 44 
9ZD N2    H14   SING N N 45 
9ZD C3    H15   SING N N 46 
9ZD C9    H16   SING N N 47 
9ZD C9    H17   SING N N 48 
9ZD C9    H18   SING N N 49 
9ZD C12   H19   SING N N 50 
9ZD C12   H20   SING N N 51 
9ZD C12   H21   SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9ZD SMILES           ACDLabs              12.01 "OP(=O)(OCC1C(O)C(O)C(O1)n3c2ncnc(c2nc3)N)NC(C)C(=O)OC"                                                                                                                                       
9ZD InChI            InChI                1.03  "InChI=1S/C14H21N6O8P/c1-6(14(23)26-2)19-29(24,25)27-3-7-9(21)10(22)13(28-7)20-5-18-8-11(15)16-4-17-12(8)20/h4-7,9-10,13,21-22H,3H2,1-2H3,(H2,15,16,17)(H2,19,24,25)/t6-,7-,9-,10-,13-/m1/s1" 
9ZD InChIKey         InChI                1.03  KHSIAISBDZSYJB-KWGHVAAJSA-N                                                                                                                                                                   
9ZD SMILES_CANONICAL CACTVS               3.385 "COC(=O)[C@@H](C)N[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                                 
9ZD SMILES           CACTVS               3.385 "COC(=O)[CH](C)N[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                        
9ZD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H](C(=O)OC)NP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"                                                                                                                   
9ZD SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C(=O)OC)NP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9ZD "SYSTEMATIC NAME" ACDLabs              12.01 "methyl (2R)-2-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]amino}propanoate (non-preferred name)" 
9ZD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[(2~{R})-1-methoxy-1-oxidanylidene-propan-2-yl]phosphonamidic acid"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9ZD "Create component" 2017-06-28 RCSB 
9ZD "Initial release"  2017-10-18 RCSB 
# 
