data_9ND
# 
_chem_comp.id                                    9ND 
_chem_comp.name                                  "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexyl-N-phenylacetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H24 Cl F2 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        479.949 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9ND 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q1D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9ND N1   N1  N  0 1 Y N N 12.946 24.414 3.727 0.949  0.704  -0.192 N1   9ND 1  
9ND N3   N2  N  0 1 Y N N 13.157 26.017 2.167 1.148  2.777  0.490  N3   9ND 2  
9ND C4   C1  C  0 1 Y N N 11.694 25.022 3.620 2.257  0.869  0.222  C4   9ND 3  
9ND C5   C2  C  0 1 Y N N 11.847 26.017 2.654 2.365  2.203  0.656  C5   9ND 4  
9ND C6   C3  C  0 1 N N N 12.609 22.009 4.206 -0.692 -1.034 0.227  C6   9ND 5  
9ND C7   C4  C  0 1 N N S 13.361 23.290 4.611 0.355  -0.524 -0.728 C7   9ND 6  
9ND C8   C5  C  0 1 Y N N 10.508 24.789 4.280 3.361  0.031  0.277  C8   9ND 7  
9ND C13  C6  C  0 1 Y N N 9.565  26.577 2.983 4.678  1.828  1.184  C13  9ND 8  
9ND C15  C7  C  0 1 N N N 13.303 23.644 6.111 1.445  -1.583 -0.904 C15  9ND 9  
9ND C17  C8  C  0 1 Y N N 16.236 25.304 3.313 -1.758 1.424  -1.308 C17  9ND 10 
9ND C20  C9  C  0 1 Y N N 12.071 20.720 2.165 -2.507 -2.489 0.729  C20  9ND 11 
9ND C21  C10 C  0 1 Y N N 17.796 23.837 2.257 -3.772 2.657  -0.904 C21  9ND 12 
9ND C22  C11 C  0 1 Y N N 17.545 24.891 3.115 -3.085 1.672  -1.593 C22  9ND 13 
9ND C26  C12 C  0 1 N N N 13.928 25.024 6.381 2.441  -1.118 -1.969 C26  9ND 14 
9ND C28  C13 C  0 1 Y N N 10.736 20.759 1.779 -2.870 -3.829 0.752  C28  9ND 15 
9ND F19  F1  F  0 1 N N N 8.482  27.324 2.698 5.861  2.282  1.651  F19  9ND 16 
9ND C9   C14 C  0 1 Y N N 10.754 26.821 2.314 3.592  2.674  1.135  C9   9ND 17 
9ND C2   C15 C  0 1 Y N N 13.773 25.054 2.837 0.310  1.900  -0.003 C2   9ND 18 
9ND C12  C16 C  0 1 Y N N 15.184 24.671 2.651 -1.111 2.164  -0.318 C12  9ND 19 
9ND C16  C17 C  0 1 Y N N 15.473 23.606 1.799 -1.808 3.156  0.374  C16  9ND 20 
9ND C23  C18 C  0 1 Y N N 16.776 23.191 1.599 -3.133 3.398  0.076  C23  9ND 21 
9ND CL24 CL1 CL 0 0 N N N 19.432 23.313 2.004 -5.442 2.963  -1.268 CL24 9ND 22 
9ND C25  C19 C  0 1 N N N 14.019 22.593 6.970 0.808  -2.903 -1.343 C25  9ND 23 
9ND C29  C20 C  0 1 N N N 13.953 22.933 8.462 1.898  -3.962 -1.518 C29  9ND 24 
9ND C33  C21 C  0 1 N N N 14.545 24.319 8.745 2.894  -3.497 -2.583 C33  9ND 25 
9ND C30  C22 C  0 1 N N N 13.869 25.401 7.872 3.531  -2.178 -2.144 C30  9ND 26 
9ND O14  O1  O  0 1 N N N 12.046 21.293 5.028 -0.809 -0.530 1.324  O14  9ND 27 
9ND N10  N3  N  0 1 N N N 12.639 21.776 2.882 -1.499 -2.050 -0.137 N10  9ND 28 
9ND C27  C23 C  0 1 Y N N 12.857 19.617 1.830 -3.149 -1.584 1.564  C27  9ND 29 
9ND C31  C24 C  0 1 Y N N 12.303 18.568 1.114 -4.143 -2.019 2.418  C31  9ND 30 
9ND C34  C25 C  0 1 Y N N 10.974 18.607 0.733 -4.499 -3.355 2.442  C34  9ND 31 
9ND C32  C26 C  0 1 Y N N 10.192 19.699 1.063 -3.865 -4.258 1.608  C32  9ND 32 
9ND C11  C27 C  0 1 Y N N 9.451  25.586 3.935 4.564  0.508  0.757  C11  9ND 33 
9ND F18  F2  F  0 1 N N N 8.266  25.393 4.551 5.638  -0.310 0.811  F18  9ND 34 
9ND H1   H1  H  0 1 N N N 14.421 23.097 4.390 -0.105 -0.313 -1.694 H1   9ND 35 
9ND H2   H2  H  0 1 N N N 10.417 24.018 5.030 3.279  -0.994 -0.055 H2   9ND 36 
9ND H3   H3  H  0 1 N N N 12.247 23.678 6.416 1.966  -1.728 0.042  H3   9ND 37 
9ND H4   H4  H  0 1 N N N 16.029 26.123 3.986 -1.224 0.656  -1.846 H4   9ND 38 
9ND H5   H5  H  0 1 N N N 18.358 25.387 3.625 -3.589 1.096  -2.356 H5   9ND 39 
9ND H6   H6  H  0 1 N N N 14.980 25.006 6.060 1.920  -0.973 -2.915 H6   9ND 40 
9ND H7   H7  H  0 1 N N N 13.381 25.782 5.801 2.895  -0.178 -1.656 H7   9ND 41 
9ND H8   H8  H  0 1 N N N 10.123 21.611 2.035 -2.376 -4.534 0.101  H8   9ND 42 
9ND H9   H9  H  0 1 N N N 10.833 27.595 1.565 3.687  3.697  1.467  H9   9ND 43 
9ND H10  H10 H  0 1 N N N 14.668 23.099 1.288 -1.312 3.731  1.141  H10  9ND 44 
9ND H11  H11 H  0 1 N N N 16.991 22.368 0.933 -3.674 4.165  0.610  H11  9ND 45 
9ND H12  H12 H  0 1 N N N 13.542 21.615 6.807 0.098  -3.234 -0.584 H12  9ND 46 
9ND H13  H13 H  0 1 N N N 15.074 22.542 6.663 0.287  -2.757 -2.289 H13  9ND 47 
9ND H14  H14 H  0 1 N N N 12.902 22.919 8.786 2.419  -4.107 -0.572 H14  9ND 48 
9ND H15  H15 H  0 1 N N N 14.521 22.179 9.027 1.444  -4.902 -1.831 H15  9ND 49 
9ND H16  H16 H  0 1 N N N 15.623 24.301 8.525 3.671  -4.252 -2.708 H16  9ND 50 
9ND H17  H17 H  0 1 N N N 14.391 24.566 9.806 2.373  -3.352 -3.529 H17  9ND 51 
9ND H18  H18 H  0 1 N N N 14.388 26.359 8.021 4.241  -1.847 -2.902 H18  9ND 52 
9ND H19  H19 H  0 1 N N N 12.817 25.502 8.176 4.052  -2.323 -1.198 H19  9ND 53 
9ND H20  H20 H  0 1 N N N 13.136 22.451 2.336 -1.381 -2.478 -0.999 H20  9ND 54 
9ND H21  H21 H  0 1 N N N 13.894 19.581 2.128 -2.871 -0.540 1.545  H21  9ND 55 
9ND H22  H22 H  0 1 N N N 12.912 17.715 0.852 -4.643 -1.316 3.067  H22  9ND 56 
9ND H23  H23 H  0 1 N N N 10.547 17.785 0.178 -5.277 -3.694 3.111  H23  9ND 57 
9ND H24  H24 H  0 1 N N N 9.155  19.728 0.763 -4.146 -5.301 1.630  H24  9ND 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9ND C34  C32 DOUB Y N 1  
9ND C34  C31 SING Y N 2  
9ND C32  C28 SING Y N 3  
9ND C31  C27 DOUB Y N 4  
9ND C23  C16 DOUB Y N 5  
9ND C23  C21 SING Y N 6  
9ND C28  C20 DOUB Y N 7  
9ND C16  C12 SING Y N 8  
9ND C27  C20 SING Y N 9  
9ND CL24 C21 SING N N 10 
9ND C20  N10 SING N N 11 
9ND N3   C5  SING Y N 12 
9ND N3   C2  DOUB Y N 13 
9ND C21  C22 DOUB Y N 14 
9ND C9   C5  DOUB Y N 15 
9ND C9   C13 SING Y N 16 
9ND C12  C2  SING N N 17 
9ND C12  C17 DOUB Y N 18 
9ND C5   C4  SING Y N 19 
9ND F19  C13 SING N N 20 
9ND C2   N1  SING Y N 21 
9ND N10  C6  SING N N 22 
9ND C13  C11 DOUB Y N 23 
9ND C22  C17 SING Y N 24 
9ND C4   N1  SING Y N 25 
9ND C4   C8  DOUB Y N 26 
9ND N1   C7  SING N N 27 
9ND C11  C8  SING Y N 28 
9ND C11  F18 SING N N 29 
9ND C6   C7  SING N N 30 
9ND C6   O14 DOUB N N 31 
9ND C7   C15 SING N N 32 
9ND C15  C26 SING N N 33 
9ND C15  C25 SING N N 34 
9ND C26  C30 SING N N 35 
9ND C25  C29 SING N N 36 
9ND C30  C33 SING N N 37 
9ND C29  C33 SING N N 38 
9ND C7   H1  SING N N 39 
9ND C8   H2  SING N N 40 
9ND C15  H3  SING N N 41 
9ND C17  H4  SING N N 42 
9ND C22  H5  SING N N 43 
9ND C26  H6  SING N N 44 
9ND C26  H7  SING N N 45 
9ND C28  H8  SING N N 46 
9ND C9   H9  SING N N 47 
9ND C16  H10 SING N N 48 
9ND C23  H11 SING N N 49 
9ND C25  H12 SING N N 50 
9ND C25  H13 SING N N 51 
9ND C29  H14 SING N N 52 
9ND C29  H15 SING N N 53 
9ND C33  H16 SING N N 54 
9ND C33  H17 SING N N 55 
9ND C30  H18 SING N N 56 
9ND C30  H19 SING N N 57 
9ND N10  H20 SING N N 58 
9ND C27  H21 SING N N 59 
9ND C31  H22 SING N N 60 
9ND C34  H23 SING N N 61 
9ND C32  H24 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9ND SMILES           ACDLabs              12.01 "n3(C(C(=O)Nc1ccccc1)C2CCCCC2)c5cc(c(F)cc5nc3c4ccc(cc4)Cl)F"                                                                                                                           
9ND InChI            InChI                1.03  "InChI=1S/C27H24ClF2N3O/c28-19-13-11-18(12-14-19)26-32-23-15-21(29)22(30)16-24(23)33(26)25(17-7-3-1-4-8-17)27(34)31-20-9-5-2-6-10-20/h2,5-6,9-17,25H,1,3-4,7-8H2,(H,31,34)/t25-/m0/s1" 
9ND InChIKey         InChI                1.03  ARWUUCFDBAFWCD-VWLOTQADSA-N                                                                                                                                                            
9ND SMILES_CANONICAL CACTVS               3.385 "Fc1cc2nc(n([C@@H](C3CCCCC3)C(=O)Nc4ccccc4)c2cc1F)c5ccc(Cl)cc5"                                                                                                                        
9ND SMILES           CACTVS               3.385 "Fc1cc2nc(n([CH](C3CCCCC3)C(=O)Nc4ccccc4)c2cc1F)c5ccc(Cl)cc5"                                                                                                                          
9ND SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)NC(=O)[C@H](C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F"                                                                                                                       
9ND SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)NC(=O)C(C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F"                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9ND "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexyl-N-phenylacetamide"           
9ND "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-[2-(4-chlorophenyl)-5,6-bis(fluoranyl)benzimidazol-1-yl]-2-cyclohexyl-~{N}-phenyl-ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9ND "Create component" 2017-05-19 RCSB 
9ND "Initial release"  2017-07-05 RCSB 
# 
