data_8YD
# 
_chem_comp.id                                    8YD 
_chem_comp.name                                  "1-{4-[6-chloro-8-fluoro-7-(5-methyl-1H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H22 Cl F N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "KRAS(G12C) inhibitor, acrylamide form, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-03-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        452.912 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8YD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5V6S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8YD C10  C1  C  0 1 Y N N N N N -5.300  19.238 -22.550 -6.404 -0.826 -0.731 C10  8YD 1  
8YD C13  C2  C  0 1 N N N N N N -7.762  16.356 -22.071 -3.476 0.153  -2.907 C13  8YD 2  
8YD C20  C3  C  0 1 Y N N N N N -13.811 18.463 -21.939 1.762  1.235  0.138  C20  8YD 3  
8YD C22  C4  C  0 1 N N N N N N -14.213 18.491 -19.388 3.489  0.243  1.382  C22  8YD 4  
8YD C26  C5  C  0 1 N N N N N N -18.549 19.129 -17.381 7.508  -0.788 -0.968 C26  8YD 5  
8YD CL   CL1 CL 0 0 N N N N N N -9.370  19.801 -19.515 -1.776 -2.436 -0.547 CL   8YD 6  
8YD C02  C6  C  0 1 Y N N N N N -10.279 19.165 -20.887 -1.304 -0.781 -0.322 C02  8YD 7  
8YD C03  C7  C  0 1 Y N N N N N -9.599  18.774 -22.035 -2.286 0.222  -0.282 C03  8YD 8  
8YD C04  C8  C  0 1 Y N N N N N -8.061  18.876 -22.190 -3.714 -0.142 -0.431 C04  8YD 9  
8YD C05  C9  C  0 1 Y N N N N N -7.525  20.191 -22.338 -4.490 -0.454 0.705  C05  8YD 10 
8YD C06  C10 C  0 1 Y N N N N N -8.111  21.499 -22.358 -4.212 -0.511 2.089  C06  8YD 11 
8YD N07  N1  N  0 1 Y N N N N N -7.136  22.379 -22.533 -5.297 -0.857 2.719  N07  8YD 12 
8YD N08  N2  N  0 1 Y N N N N N -5.975  21.711 -22.617 -6.337 -1.046 1.800  N08  8YD 13 
8YD C09  C11 C  0 1 Y N N N N N -6.159  20.371 -22.511 -5.845 -0.798 0.544  C09  8YD 14 
8YD C11  C12 C  0 1 Y N N N N N -5.834  17.955 -22.397 -5.635 -0.519 -1.831 C11  8YD 15 
8YD C12  C13 C  0 1 Y N N N N N -7.210  17.765 -22.233 -4.298 -0.179 -1.689 C12  8YD 16 
8YD C14  C14 C  0 1 Y N N N N N -10.341 18.298 -23.103 -1.930 1.551  -0.104 C14  8YD 17 
8YD F15  F1  F  0 1 N N N N N N -9.735  17.881 -24.243 -2.878 2.513  -0.065 F15  8YD 18 
8YD C16  C15 C  0 1 Y N N N N N -11.748 18.207 -23.036 -0.576 1.887  0.037  C16  8YD 19 
8YD N17  N3  N  0 1 Y N N N N N -12.463 17.717 -24.104 -0.176 3.156  0.212  N17  8YD 20 
8YD C18  C16 C  0 1 Y N N N N N -13.811 17.636 -24.086 1.097  3.439  0.351  C18  8YD 21 
8YD N19  N4  N  0 1 Y N N N N N -14.470 18.024 -22.978 2.047  2.519  0.312  N19  8YD 22 
8YD N21  N5  N  0 1 N N N N N N -14.633 18.753 -20.803 2.762  0.286  0.105  N21  8YD 23 
8YD C23  C17 C  0 1 N N N N N N -15.264 17.629 -18.746 4.464  -0.939 1.370  C23  8YD 24 
8YD N24  N6  N  0 1 N N N N N N -16.433 18.399 -18.620 5.314  -0.832 0.174  N24  8YD 25 
8YD C25  C18 C  0 1 N N N N N N -17.298 18.234 -17.471 6.656  -0.900 0.270  C25  8YD 26 
8YD C27  C19 C  0 1 N N N N N N -19.794 18.260 -17.411 8.984  -0.896 -0.583 C27  8YD 27 
8YD O28  O1  O  0 1 N N N N N N -17.005 17.403 -16.642 7.179  -1.052 1.354  O28  8YD 28 
8YD C29  C20 C  0 1 N N N N N N -16.714 19.362 -19.647 4.659  -0.647 -1.130 C29  8YD 29 
8YD C30  C21 C  0 1 N N N N N N -16.060 19.066 -20.967 3.676  0.523  -1.020 C30  8YD 30 
8YD C31  C22 C  0 1 Y N N N N N -12.410 18.573 -21.908 0.403  0.864  -0.007 C31  8YD 31 
8YD C32  C23 C  0 1 Y N N N N N -11.661 19.087 -20.820 0.015  -0.469 -0.188 C32  8YD 32 
8YD H101 H1  H  0 0 N N N N N N -4.238  19.368 -22.697 -7.443 -1.094 -0.858 H101 8YD 33 
8YD H132 H2  H  0 0 N N N N N N -7.771  16.086 -21.005 -3.539 1.222  -3.108 H132 8YD 34 
8YD H131 H3  H  0 0 N N N N N N -8.787  16.316 -22.468 -2.436 -0.123 -2.730 H131 8YD 35 
8YD H133 H4  H  0 0 N N N N N N -7.127  15.648 -22.623 -3.857 -0.401 -3.765 H133 8YD 36 
8YD H222 H5  H  0 0 N N N N N N -13.244 17.970 -19.376 4.043  1.171  1.516  H222 8YD 37 
8YD H221 H6  H  0 0 N N N N N N -14.125 19.442 -18.842 2.780  0.121  2.200  H221 8YD 38 
8YD H261 H7  H  0 0 N Y N N N N -18.524 19.702 -16.442 7.252  -1.591 -1.659 H261 8YD 39 
8YD H262 H8  H  0 0 N N N N N N -18.566 19.823 -18.234 7.327  0.174  -1.447 H262 8YD 40 
8YD H061 H9  H  0 0 N N N N N N -9.161  21.727 -22.250 -3.257 -0.301 2.549  H061 8YD 41 
8YD H081 H10 H  0 0 N N N N N N -5.084  22.147 -22.742 -7.246 -1.307 2.014  H081 8YD 42 
8YD H111 H11 H  0 0 N N N N N N -5.175  17.099 -22.406 -6.077 -0.544 -2.816 H111 8YD 43 
8YD H181 H12 H  0 0 N N N N N N -14.351 17.266 -24.945 1.383  4.471  0.490  H181 8YD 44 
8YD H232 H13 H  0 0 N N N N N N -15.462 16.749 -19.375 5.086  -0.909 2.264  H232 8YD 45 
8YD H231 H14 H  0 0 N N N N N N -14.923 17.301 -17.753 3.906  -1.875 1.340  H231 8YD 46 
8YD H271 H15 H  0 0 N N N N N N -20.688 18.897 -17.347 9.165  -1.858 -0.104 H271 8YD 47 
8YD H273 H16 H  0 0 N N N N N N -19.819 17.687 -18.350 9.600  -0.815 -1.479 H273 8YD 48 
8YD H272 H17 H  0 0 N N N N N N -19.777 17.566 -16.558 9.240  -0.093 0.107  H272 8YD 49 
8YD H291 H18 H  0 0 N N N N N N -16.364 20.346 -19.302 5.410  -0.425 -1.889 H291 8YD 50 
8YD H292 H19 H  0 0 N N N N N N -17.803 19.394 -19.801 4.122  -1.556 -1.402 H292 8YD 51 
8YD H301 H20 H  0 0 N N N N N N -16.160 19.945 -21.621 3.102  0.604  -1.943 H301 8YD 52 
8YD H302 H21 H  0 0 N N N N N N -16.564 18.205 -21.430 4.228  1.447  -0.852 H302 8YD 53 
8YD H321 H22 H  0 0 N N N N N N -12.173 19.421 -19.930 0.761  -1.250 -0.220 H321 8YD 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8YD F15 C14  SING N N 1  
8YD N17 C18  DOUB Y N 2  
8YD N17 C16  SING Y N 3  
8YD C18 N19  SING Y N 4  
8YD C14 C16  DOUB Y N 5  
8YD C14 C03  SING Y N 6  
8YD C16 C31  SING Y N 7  
8YD N19 C20  DOUB Y N 8  
8YD N08 N07  SING Y N 9  
8YD N08 C09  SING Y N 10 
8YD C10 C09  DOUB Y N 11 
8YD C10 C11  SING Y N 12 
8YD N07 C06  DOUB Y N 13 
8YD C09 C05  SING Y N 14 
8YD C11 C12  DOUB Y N 15 
8YD C06 C05  SING Y N 16 
8YD C05 C04  DOUB Y N 17 
8YD C12 C04  SING Y N 18 
8YD C12 C13  SING N N 19 
8YD C04 C03  SING N N 20 
8YD C03 C02  DOUB Y N 21 
8YD C20 C31  SING Y N 22 
8YD C20 N21  SING N N 23 
8YD C31 C32  DOUB Y N 24 
8YD C30 N21  SING N N 25 
8YD C30 C29  SING N N 26 
8YD C02 C32  SING Y N 27 
8YD C02 CL   SING N N 28 
8YD N21 C22  SING N N 29 
8YD C29 N24  SING N N 30 
8YD C22 C23  SING N N 31 
8YD C23 N24  SING N N 32 
8YD N24 C25  SING N N 33 
8YD C25 C26  SING N N 34 
8YD C25 O28  DOUB N N 35 
8YD C27 C26  SING N N 36 
8YD C10 H101 SING N N 37 
8YD C13 H132 SING N N 38 
8YD C13 H131 SING N N 39 
8YD C13 H133 SING N N 40 
8YD C22 H222 SING N N 41 
8YD C22 H221 SING N N 42 
8YD C26 H261 SING N N 43 
8YD C26 H262 SING N N 44 
8YD C06 H061 SING N N 45 
8YD N08 H081 SING N N 46 
8YD C11 H111 SING N N 47 
8YD C18 H181 SING N N 48 
8YD C23 H232 SING N N 49 
8YD C23 H231 SING N N 50 
8YD C27 H271 SING N N 51 
8YD C27 H273 SING N N 52 
8YD C27 H272 SING N N 53 
8YD C29 H291 SING N N 54 
8YD C29 H292 SING N N 55 
8YD C30 H301 SING N N 56 
8YD C30 H302 SING N N 57 
8YD C32 H321 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8YD SMILES           ACDLabs              12.01 "c4c5c(c(c2c(Cl)cc3c(N1CCN(C(CC)=O)CC1)ncnc3c2F)c(C)c4)cnn5"                                                                                                       
8YD InChI            InChI                1.03  "InChI=1S/C23H22ClFN6O/c1-3-18(32)30-6-8-31(9-7-30)23-14-10-16(24)20(21(25)22(14)26-12-27-23)19-13(2)4-5-17-15(19)11-28-29-17/h4-5,10-12H,3,6-9H2,1-2H3,(H,28,29)" 
8YD InChIKey         InChI                1.03  BNGJOZTWYUJUMW-UHFFFAOYSA-N                                                                                                                                        
8YD SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N1CCN(CC1)c2ncnc3c(F)c(c(Cl)cc23)c4c(C)ccc5[nH]ncc45"                                                                                                      
8YD SMILES           CACTVS               3.385 "CCC(=O)N1CCN(CC1)c2ncnc3c(F)c(c(Cl)cc23)c4c(C)ccc5[nH]ncc45"                                                                                                      
8YD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCN(CC1)c2c3cc(c(c(c3ncn2)F)c4c(ccc5c4cn[nH]5)C)Cl"                                                                                                      
8YD SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCN(CC1)c2c3cc(c(c(c3ncn2)F)c4c(ccc5c4cn[nH]5)C)Cl"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8YD "SYSTEMATIC NAME" ACDLabs              12.01 "1-{4-[6-chloro-8-fluoro-7-(5-methyl-1H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one"          
8YD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "1-[4-[6-chloranyl-8-fluoranyl-7-(5-methyl-1~{H}-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8YD "Create component" 2017-03-20 RCSB 
8YD "Modify synonyms"  2017-03-21 RCSB 
8YD "Initial release"  2017-06-28 RCSB 
8YD "Modify synonyms"  2021-03-13 RCSB 
8YD "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      8YD 
_pdbx_chem_comp_synonyms.name         "KRAS(G12C) inhibitor, acrylamide form, bound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8YD 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C27 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
