data_6ZD
# 
_chem_comp.id                                    6ZD 
_chem_comp.name                                  "5'-O-[(R)-[({2-[(chloroacetyl)amino]ethyl}sulfamoyl)methyl](hydroxy)phosphoryl]guanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 Cl N7 O10 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        559.876 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6ZD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5KYK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6ZD C10 C1  C  0 1 N N R N N N -16.546 -38.444 118.920 4.852   -1.503 -1.065 C10 6ZD 1  
6ZD C17 C2  C  0 1 Y N N N N N -12.619 -40.778 119.198 6.144   1.893  1.411  C17 6ZD 2  
6ZD C20 C3  C  0 1 N N N N N N -11.226 -39.290 121.231 7.863   2.535  -0.614 C20 6ZD 3  
6ZD C28 C4  C  0 1 N N N N N N -22.085 -40.638 114.830 -5.451  -0.116 0.259  C28 6ZD 4  
6ZD O01 O1  O  0 1 N N N N N N -20.785 -38.055 114.442 -4.386  -2.874 0.527  O01 6ZD 5  
6ZD S02 S1  S  0 1 N N N N N N -20.423 -38.706 115.671 -3.751  -1.910 1.357  S02 6ZD 6  
6ZD C03 C5  C  0 1 N N N N N N -18.658 -39.142 115.692 -2.334  -1.168 0.501  C03 6ZD 7  
6ZD P04 P1  P  0 1 N N N N N N -18.522 -40.755 116.565 -1.023  -2.419 0.300  P04 6ZD 8  
6ZD O05 O2  O  0 1 N N N N N N -19.079 -40.579 118.024 0.235   -1.760 -0.459 O05 6ZD 9  
6ZD C06 C6  C  0 1 N N N N N N -18.228 -40.923 119.097 1.465   -2.455 -0.675 C06 6ZD 10 
6ZD C07 C7  C  0 1 N N R N N N -18.016 -39.727 119.990 2.441   -1.544 -1.421 C07 6ZD 11 
6ZD C08 C8  C  0 1 N N S N N N -17.999 -38.630 119.315 3.731   -2.319 -1.753 C08 6ZD 12 
6ZD O09 O3  O  0 1 N N N N N N -18.448 -37.487 120.182 3.939   -2.362 -3.167 O09 6ZD 13 
6ZD O11 O4  O  0 1 N N N N N N -16.229 -37.124 118.843 6.007   -1.416 -1.902 O11 6ZD 14 
6ZD C12 C9  C  0 1 N N R N N N -15.748 -39.107 120.068 4.185   -0.115 -0.895 C12 6ZD 15 
6ZD N13 N1  N  0 1 Y N N N N N -14.629 -39.918 119.525 4.805   0.624  0.208  N13 6ZD 16 
6ZD C14 C10 C  0 1 Y N N N N N -14.707 -40.797 118.547 4.359   0.671  1.497  C14 6ZD 17 
6ZD N15 N2  N  0 1 Y N N N N N -13.505 -41.339 118.324 5.152   1.424  2.204  N15 6ZD 18 
6ZD C16 C11 C  0 1 Y N N N N N -13.326 -39.870 119.969 5.928   1.389  0.134  C16 6ZD 19 
6ZD C18 C12 C  0 1 N N N N N N -11.145 -40.973 119.432 7.305   2.763  1.623  C18 6ZD 20 
6ZD N19 N3  N  0 1 N N N N N N -10.486 -40.230 120.437 8.104   3.033  0.580  N19 6ZD 21 
6ZD N21 N4  N  0 1 N N N N N N -10.566 -38.536 122.247 8.713   2.846  -1.641 N21 6ZD 22 
6ZD N22 N5  N  0 1 N N N N N N -12.649 -39.104 121.003 6.803   1.724  -0.867 N22 6ZD 23 
6ZD O23 O5  O  0 1 N N N N N N -10.517 -41.777 118.752 7.539   3.232  2.726  O23 6ZD 24 
6ZD O24 O6  O  0 1 N N N N N N -16.566 -39.845 120.707 2.812   -0.436 -0.585 O24 6ZD 25 
6ZD O25 O7  O  0 1 N N N N N N -19.264 -41.834 115.835 -0.596  -2.905 1.631  O25 6ZD 26 
6ZD O26 O8  O  0 1 N N N N N N -17.065 -41.115 116.650 -1.587  -3.653 -0.567 O26 6ZD 27 
6ZD N27 N6  N  0 1 N N N N N N -21.302 -40.086 115.913 -4.854  -0.680 1.472  N27 6ZD 28 
6ZD C29 C13 C  0 1 N N N N N N -22.288 -42.151 115.043 -6.679  0.716  0.634  C29 6ZD 29 
6ZD N30 N7  N  0 1 N N N N N N -23.444 -42.377 115.816 -7.276  1.280  -0.579 N30 6ZD 30 
6ZD C31 C14 C  0 1 N N N N N N -23.857 -43.708 116.105 -8.377  2.054  -0.491 C31 6ZD 31 
6ZD C32 C15 C  0 1 N N N N N N -25.122 -43.945 116.953 -8.991  2.634  -1.739 C32 6ZD 32 
6ZD O34 O9  O  0 1 N N N N N N -23.209 -44.662 115.675 -8.873  2.282  0.592  O34 6ZD 33 
6ZD O35 O10 O  0 1 N N N N N N -20.721 -37.699 116.646 -3.418  -2.210 2.705  O35 6ZD 34 
6ZD H1  H1  H  0 1 N N N N N N -16.344 -38.976 117.979 5.108   -1.933 -0.097 H1  6ZD 35 
6ZD H2  H2  H  0 1 N N N N N N -21.559 -40.472 113.879 -4.722  0.520  -0.243 H2  6ZD 36 
6ZD H3  H3  H  0 1 N N N N N N -23.065 -40.140 114.799 -5.749  -0.924 -0.409 H3  6ZD 37 
6ZD H4  H4  H  0 1 N N N N N N -18.278 -39.234 114.664 -2.648  -0.810 -0.479 H4  6ZD 38 
6ZD H5  H5  H  0 1 N N N N N N -18.084 -38.372 116.227 -1.952  -0.333 1.088  H5  6ZD 39 
6ZD H6  H6  H  0 1 N N N N N N -18.686 -41.736 119.679 1.895   -2.740 0.286  H6  6ZD 40 
6ZD H7  H7  H  0 1 N N N N N N -17.258 -41.258 118.700 1.277   -3.351 -1.268 H7  6ZD 41 
6ZD H8  H8  H  0 1 N N N N N N -18.782 -39.726 120.780 1.980   -1.179 -2.338 H8  6ZD 42 
6ZD H9  H9  H  0 1 N N N N N N -18.621 -38.672 118.409 3.687   -3.328 -1.343 H9  6ZD 43 
6ZD H10 H10 H  0 1 N N N N N N -19.358 -37.611 120.425 4.767   -2.787 -3.430 H10 6ZD 44 
6ZD H11 H11 H  0 1 N N N N N N -15.317 -37.031 118.595 6.407   -2.271 -2.111 H11 6ZD 45 
6ZD H12 H12 H  0 1 N N N N N N -15.333 -38.308 120.699 4.246   0.456  -1.822 H12 6ZD 46 
6ZD H13 H13 H  0 1 N N N N N N -15.608 -41.043 118.005 3.484   0.163  1.872  H13 6ZD 47 
6ZD H14 H14 H  0 1 N N N N N N -9.587  -38.662 122.407 9.476   3.424  -1.481 H14 6ZD 48 
6ZD H15 H15 H  0 1 N N N N N N -11.083 -37.882 122.799 8.553   2.489  -2.529 H15 6ZD 49 
6ZD H16 H16 H  0 1 N N N N N N -13.163 -38.449 121.557 6.664   1.379  -1.763 H16 6ZD 50 
6ZD H17 H17 H  0 1 N N N N N N -16.920 -41.951 116.223 -1.885  -3.407 -1.453 H17 6ZD 51 
6ZD H18 H18 H  0 1 N N N N N N -21.937 -39.897 116.662 -5.105  -0.334 2.342  H18 6ZD 52 
6ZD H19 H19 H  0 1 N N N N N N -22.400 -42.645 114.066 -7.409  0.080  1.136  H19 6ZD 53 
6ZD H20 H20 H  0 1 N N N N N N -21.413 -42.566 115.565 -6.381  1.523  1.302  H20 6ZD 54 
6ZD H21 H21 H  0 1 N N N N N N -23.974 -41.603 116.161 -6.879  1.097  -1.445 H21 6ZD 55 
6ZD H22 H22 H  0 1 N N N N N N -25.533 -44.950 117.129 -8.261  3.270  -2.241 H22 6ZD 56 
6ZD H23 H23 H  0 1 N N N N N N -25.408 -43.282 117.783 -9.289  1.827  -2.407 H23 6ZD 57 
6ZD CL1 CL1 CL 0 0 N Y N N N N ?       ?       ?       -10.438 3.614  -1.296 CL1 6ZD 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6ZD O01 S02 DOUB N N 1  
6ZD C28 C29 SING N N 2  
6ZD C28 N27 SING N N 3  
6ZD C29 N30 SING N N 4  
6ZD S02 C03 SING N N 5  
6ZD S02 N27 SING N N 6  
6ZD S02 O35 DOUB N N 7  
6ZD O34 C31 DOUB N N 8  
6ZD C03 P04 SING N N 9  
6ZD N30 C31 SING N N 10 
6ZD O25 P04 DOUB N N 11 
6ZD C31 C32 SING N N 12 
6ZD P04 O26 SING N N 13 
6ZD P04 O05 SING N N 14 
6ZD O05 C06 SING N N 15 
6ZD N15 C14 DOUB Y N 16 
6ZD N15 C17 SING Y N 17 
6ZD C14 N13 SING Y N 18 
6ZD O23 C18 DOUB N N 19 
6ZD O11 C10 SING N N 20 
6ZD C10 C08 SING N N 21 
6ZD C10 C12 SING N N 22 
6ZD C06 C07 SING N N 23 
6ZD C17 C18 SING N N 24 
6ZD C17 C16 DOUB Y N 25 
6ZD C08 C07 SING N N 26 
6ZD C08 O09 SING N N 27 
6ZD C18 N19 SING N N 28 
6ZD N13 C16 SING Y N 29 
6ZD N13 C12 SING N N 30 
6ZD C16 N22 SING N N 31 
6ZD C07 O24 SING N N 32 
6ZD C12 O24 SING N N 33 
6ZD N19 C20 DOUB N N 34 
6ZD N22 C20 SING N N 35 
6ZD C20 N21 SING N N 36 
6ZD C10 H1  SING N N 37 
6ZD C28 H2  SING N N 38 
6ZD C28 H3  SING N N 39 
6ZD C03 H4  SING N N 40 
6ZD C03 H5  SING N N 41 
6ZD C06 H6  SING N N 42 
6ZD C06 H7  SING N N 43 
6ZD C07 H8  SING N N 44 
6ZD C08 H9  SING N N 45 
6ZD O09 H10 SING N N 46 
6ZD O11 H11 SING N N 47 
6ZD C12 H12 SING N N 48 
6ZD C14 H13 SING N N 49 
6ZD N21 H14 SING N N 50 
6ZD N21 H15 SING N N 51 
6ZD N22 H16 SING N N 52 
6ZD O26 H17 SING N N 53 
6ZD N27 H18 SING N N 54 
6ZD C29 H19 SING N N 55 
6ZD C29 H20 SING N N 56 
6ZD N30 H21 SING N N 57 
6ZD C32 H22 SING N N 58 
6ZD C32 H23 SING N N 59 
6ZD C32 CL1 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6ZD SMILES           ACDLabs              12.01 "C1(C(C(COP(CS(=O)(NCCNC(CCl)=O)=O)(O)=O)OC1n3c2c(C(N=C(N)N2)=O)nc3)O)O"                                                                                                                                                    
6ZD InChI            InChI                1.03  "InChI=1S/C15H23ClN7O10PS/c16-3-8(24)18-1-2-20-35(30,31)6-34(28,29)32-4-7-10(25)11(26)14(33-7)23-5-19-9-12(23)21-15(17)22-13(9)27/h5,7,10-11,14,20,25-26H,1-4,6H2,(H,18,24)(H,28,29)(H3,17,21,22,27)/t7-,10-,11-,14-/m1/s1" 
6ZD InChIKey         InChI                1.03  AYYURYDKBCGXDD-FRJWGUMJSA-N                                                                                                                                                                                                 
6ZD SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@H](CO[P](O)(=O)C[S](=O)(=O)NCCNC(=O)CCl)[C@@H](O)[C@H]3O)c2N1"                                                                                                                                  
6ZD SMILES           CACTVS               3.385 "NC1=NC(=O)c2ncn([CH]3O[CH](CO[P](O)(=O)C[S](=O)(=O)NCCNC(=O)CCl)[CH](O)[CH]3O)c2N1"                                                                                                                                        
6ZD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(CS(=O)(=O)NCCNC(=O)CCl)O)O)O)NC(=NC2=O)N"                                                                                                                                    
6ZD SMILES           "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1C3C(C(C(O3)COP(=O)(CS(=O)(=O)NCCNC(=O)CCl)O)O)O)NC(=NC2=O)N"                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6ZD "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-[({2-[(chloroacetyl)amino]ethyl}sulfamoyl)methyl](hydroxy)phosphoryl]guanosine"                                                                                        
6ZD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[2-(2-chloranylethanoylamino)ethylsulfamoylmethyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6ZD "Create component" 2016-07-29 RCSB 
6ZD "Initial release"  2017-04-12 RCSB 
6ZD "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            6ZD 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C32 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
