data_6XD
# 
_chem_comp.id                                    6XD 
_chem_comp.name                                  "1-(1-adamantyl)-3-(3-imidazol-1-ylpropyl)urea" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H26 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-14 
_chem_comp.pdbx_modified_date                    2016-12-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        302.415 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6XD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LI7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6XD C4  C1  C 0 1 N N N -18.229 7.577 -19.008 -4.779 -1.614 -0.023 C4  6XD 1  
6XD C5  C2  C 0 1 N N N -19.741 7.520 -18.989 -4.497 -0.759 -1.260 C5  6XD 2  
6XD C6  C3  C 0 1 N N N -20.197 6.453 -19.934 -5.398 0.477  -1.242 C6  6XD 3  
6XD C7  C4  C 0 1 N N N -19.661 5.175 -19.399 -5.115 1.296  0.019  C7  6XD 4  
6XD C8  C5  C 0 1 N N N -20.158 4.974 -17.996 -3.649 1.733  0.025  C8  6XD 5  
6XD C10 C6  C 0 1 N N N -18.186 5.267 -19.547 -5.397 0.441  1.256  C10 6XD 6  
6XD N02 N1  N 0 1 N N N -20.046 5.744 -15.802 -1.344 0.915  0.012  N02 6XD 7  
6XD C03 C7  C 0 1 N N N -19.701 6.429 -14.636 -0.365 -0.011 -0.001 C03 6XD 8  
6XD N04 N2  N 0 1 N N N -20.297 5.963 -13.442 0.927  0.374  0.004  N04 6XD 9  
6XD C05 C8  C 0 1 N N N -20.106 6.668 -12.196 1.992  -0.632 -0.011 C05 6XD 10 
6XD C06 C9  C 0 1 N N N -20.054 5.702 -11.015 3.353  0.065  -0.001 C06 6XD 11 
6XD C07 C10 C 0 1 N N N -21.236 4.747 -10.999 4.465  -0.985 -0.017 C07 6XD 12 
6XD N08 N3  N 0 1 Y N N -22.542 5.560 -10.823 5.769  -0.317 -0.007 N08 6XD 13 
6XD C09 C11 C 0 1 Y N N -23.033 5.870 -9.563  6.482  0.032  1.084  C09 6XD 14 
6XD N10 N4  N 0 1 Y N N -24.082 6.653 -9.724  7.589  0.604  0.696  N10 6XD 15 
6XD C11 C12 C 0 1 Y N N -24.330 6.809 -11.132 7.620  0.641  -0.645 C11 6XD 16 
6XD C12 C13 C 0 1 Y N N -23.352 6.089 -11.780 6.494  0.064  -1.104 C12 6XD 17 
6XD O13 O1  O 0 1 N N N -18.980 7.346 -14.642 -0.646 -1.194 -0.019 O13 6XD 18 
6XD C1  C14 C 0 1 N N N -19.532 5.997 -17.122 -2.748 0.496  0.007  C1  6XD 19 
6XD C2  C15 C 0 1 N N N -18.041 5.805 -17.239 -3.030 -0.359 1.244  C2  6XD 20 
6XD C3  C16 C 0 1 N N N -17.576 6.300 -18.617 -4.496 -0.796 1.238  C3  6XD 21 
6XD C9  C17 C 0 1 N N N -20.075 7.343 -17.512 -3.031 -0.322 -1.255 C9  6XD 22 
6XD H1  H1  H 0 1 N N N -17.904 7.835 -20.027 -5.824 -1.926 -0.028 H1  6XD 23 
6XD H2  H2  H 0 1 N N N -17.903 8.362 -18.310 -4.137 -2.495 -0.036 H2  6XD 24 
6XD H3  H3  H 0 1 N N N -20.137 8.490 -19.325 -4.699 -1.343 -2.159 H3  6XD 25 
6XD H4  H4  H 0 1 N N N -19.801 6.641 -20.943 -5.197 1.086  -2.124 H4  6XD 26 
6XD H5  H5  H 0 1 N N N -21.296 6.420 -19.972 -6.443 0.166  -1.247 H5  6XD 27 
6XD H6  H6  H 0 1 N N N -20.029 4.347 -20.023 -5.757 2.177  0.032  H6  6XD 28 
6XD H7  H7  H 0 1 N N N -21.252 5.084 -17.971 -3.448 2.342  -0.856 H7  6XD 29 
6XD H8  H8  H 0 1 N N N -19.883 3.968 -17.646 -3.447 2.316  0.924  H8  6XD 30 
6XD H9  H9  H 0 1 N N N -17.746 4.284 -19.321 -5.196 1.024  2.155  H9  6XD 31 
6XD H10 H10 H 0 1 N N N -17.951 5.544 -20.585 -6.442 0.129  1.252  H10 6XD 32 
6XD H11 H11 H 0 1 N N N -20.715 5.006 -15.711 -1.119 1.859  0.026  H11 6XD 33 
6XD H12 H12 H 0 1 N N N -20.858 5.135 -13.460 1.152  1.318  0.018  H12 6XD 34 
6XD H13 H13 H 0 1 N N N -19.161 7.228 -12.243 1.903  -1.268 0.870  H13 6XD 35 
6XD H14 H14 H 0 1 N N N -20.941 7.369 -12.049 1.902  -1.242 -0.910 H14 6XD 36 
6XD H15 H15 H 0 1 N N N -19.126 5.115 -11.079 3.442  0.701  -0.882 H15 6XD 37 
6XD H16 H16 H 0 1 N N N -20.057 6.284 -10.082 3.442  0.675  0.898  H16 6XD 38 
6XD H17 H17 H 0 1 N N N -21.273 4.191 -11.947 4.376  -1.621 0.864  H17 6XD 39 
6XD H18 H18 H 0 1 N N N -21.127 4.040 -10.164 4.376  -1.595 -0.916 H18 6XD 40 
6XD H19 H19 H 0 1 N N N -22.629 5.531 -8.620  6.186  -0.135 2.110  H19 6XD 41 
6XD H20 H20 H 0 1 N N N -25.126 7.378 -11.590 8.413  1.057  -1.249 H20 6XD 42 
6XD H21 H21 H 0 1 N N N -23.247 5.967 -12.848 6.213  -0.066 -2.139 H21 6XD 43 
6XD H22 H22 H 0 1 N N N -17.798 4.738 -17.130 -2.388 -1.240 1.231  H22 6XD 44 
6XD H23 H23 H 0 1 N N N -17.533 6.380 -16.451 -2.829 0.225  2.142  H23 6XD 45 
6XD H24 H24 H 0 1 N N N -16.479 6.339 -18.695 -4.697 -1.405 2.119  H24 6XD 46 
6XD H25 H25 H 0 1 N N N -19.599 8.135 -16.915 -2.389 -1.203 -1.268 H25 6XD 47 
6XD H26 H26 H 0 1 N N N -21.164 7.374 -17.360 -2.830 0.287  -2.136 H26 6XD 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6XD C6  C7  SING N N 1  
6XD C6  C5  SING N N 2  
6XD C10 C7  SING N N 3  
6XD C10 C3  SING N N 4  
6XD C7  C8  SING N N 5  
6XD C4  C5  SING N N 6  
6XD C4  C3  SING N N 7  
6XD C5  C9  SING N N 8  
6XD C3  C2  SING N N 9  
6XD C8  C1  SING N N 10 
6XD C9  C1  SING N N 11 
6XD C2  C1  SING N N 12 
6XD C1  N02 SING N N 13 
6XD N02 C03 SING N N 14 
6XD O13 C03 DOUB N N 15 
6XD C03 N04 SING N N 16 
6XD N04 C05 SING N N 17 
6XD C05 C06 SING N N 18 
6XD C12 C11 DOUB Y N 19 
6XD C12 N08 SING Y N 20 
6XD C11 N10 SING Y N 21 
6XD C06 C07 SING N N 22 
6XD C07 N08 SING N N 23 
6XD N08 C09 SING Y N 24 
6XD N10 C09 DOUB Y N 25 
6XD C4  H1  SING N N 26 
6XD C4  H2  SING N N 27 
6XD C5  H3  SING N N 28 
6XD C6  H4  SING N N 29 
6XD C6  H5  SING N N 30 
6XD C7  H6  SING N N 31 
6XD C8  H7  SING N N 32 
6XD C8  H8  SING N N 33 
6XD C10 H9  SING N N 34 
6XD C10 H10 SING N N 35 
6XD N02 H11 SING N N 36 
6XD N04 H12 SING N N 37 
6XD C05 H13 SING N N 38 
6XD C05 H14 SING N N 39 
6XD C06 H15 SING N N 40 
6XD C06 H16 SING N N 41 
6XD C07 H17 SING N N 42 
6XD C07 H18 SING N N 43 
6XD C09 H19 SING N N 44 
6XD C11 H20 SING N N 45 
6XD C12 H21 SING N N 46 
6XD C2  H22 SING N N 47 
6XD C2  H23 SING N N 48 
6XD C3  H24 SING N N 49 
6XD C9  H25 SING N N 50 
6XD C9  H26 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6XD InChI            InChI                1.03  "InChI=1S/C17H26N4O/c22-16(19-2-1-4-21-5-3-18-12-21)20-17-9-13-6-14(10-17)8-15(7-13)11-17/h3,5,12-15H,1-2,4,6-11H2,(H2,19,20,22)/t13-,14+,15-,17-" 
6XD InChIKey         InChI                1.03  JODLYBRKXRTSIK-LTBQPASTSA-N                                                                                                                        
6XD SMILES_CANONICAL CACTVS               3.385 "O=C(NCCCn1ccnc1)NC23CC4CC(CC(C4)C2)C3"                                                                                                            
6XD SMILES           CACTVS               3.385 "O=C(NCCCn1ccnc1)NC23CC4CC(CC(C4)C2)C3"                                                                                                            
6XD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1cn(cn1)CCCNC(=O)NC23CC4CC(C2)CC(C4)C3"                                                                                                          
6XD SMILES           "OpenEye OEToolkits" 2.0.5 "c1cn(cn1)CCCNC(=O)NC23CC4CC(C2)CC(C4)C3"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6XD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "1-(1-adamantyl)-3-(3-imidazol-1-ylpropyl)urea" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6XD "Create component" 2016-07-14 EBI  
6XD "Initial release"  2016-12-21 RCSB 
# 
