data_6QD
#

_chem_comp.id                                   6QD
_chem_comp.name                                 "5-(6-oxidanylidene-3~{H}-purin-9-yl)pentylphosphonic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H15 N4 O4 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        9-[5-(phosphonoheptyl]hypoxanthine
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-05-23
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       286.224
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6QD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5K51
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6QD  C15  C1   C  0  1  N  N  N  -24.811   5.743  -16.215   3.905   0.289   0.824  C15  6QD   1  
6QD  O01  O1   O  0  1  N  N  N  -19.571  12.913  -15.804  -6.233  -0.294  -1.252  O01  6QD   2  
6QD  C02  C2   C  0  1  N  N  N  -19.707  11.915  -15.057  -5.242  -0.582  -0.601  C02  6QD   3  
6QD  N03  N1   N  0  1  N  N  N  -19.433  12.025  -13.696  -5.080  -1.823  -0.101  N03  6QD   4  
6QD  C04  C3   C  0  1  N  N  N  -19.589  10.893  -12.852  -4.025  -2.142   0.596  C04  6QD   5  
6QD  N05  N2   N  0  1  N  N  N  -20.031   9.628  -13.406  -3.035  -1.272   0.864  N05  6QD   6  
6QD  C06  C4   C  0  1  Y  N  N  -20.311   9.516  -14.798  -3.093   0.016   0.406  C06  6QD   7  
6QD  C07  C5   C  0  1  Y  N  N  -20.162  10.611  -15.623  -4.195   0.410  -0.348  C07  6QD   8  
6QD  N08  N3   N  0  1  Y  N  N  -20.495  10.213  -16.873  -4.013   1.708  -0.682  N08  6QD   9  
6QD  C09  C6   C  0  1  Y  N  N  -20.830   8.949  -16.833  -2.881   2.121  -0.187  C09  6QD  10  
6QD  N10  N4   N  0  1  Y  N  N  -20.727   8.507  -15.591  -2.284   1.106   0.500  N10  6QD  11  
6QD  C11  C7   C  0  1  N  N  N  -21.009   7.171  -15.153  -0.999   1.173   1.201  C11  6QD  12  
6QD  C12  C8   C  0  1  N  N  N  -22.537   6.907  -15.151   0.111   0.661   0.281  C12  6QD  13  
6QD  C13  C9   C  0  1  N  N  N  -22.878   5.562  -14.533   1.453   0.731   1.013  C13  6QD  14  
6QD  C14  C10  C  0  1  N  N  N  -24.152   4.881  -15.185   2.563   0.219   0.092  C14  6QD  15  
6QD  P16  P1   P  0  1  N  N  N  -25.744   4.759  -17.408   5.227  -0.321  -0.272  P16  6QD  16  
6QD  O17  O2   O  0  1  N  N  N  -25.414   5.232  -18.808   4.885  -1.679  -0.749  O17  6QD  17  
6QD  O18  O3   O  0  1  N  N  N  -25.382   3.321  -17.268   5.378   0.669  -1.533  O18  6QD  18  
6QD  O19  O4   O  0  1  N  N  N  -27.231   4.934  -17.152   6.617  -0.371   0.540  O19  6QD  19  
6QD  H1   H1   H  0  1  N  N  N  -24.038   6.314  -16.750   4.112   1.322   1.104  H1   6QD  20  
6QD  H2   H2   H  0  1  N  N  N  -25.498   6.439  -15.711   3.862  -0.329   1.721  H2   6QD  21  
6QD  H3   H3   H  0  1  N  N  N  -19.378  10.975  -11.796  -3.943  -3.150   0.975  H3   6QD  22  
6QD  H4   H4   H  0  1  N  N  N  -20.139   8.833  -12.810  -2.271  -1.561   1.388  H4   6QD  23  
6QD  H5   H5   H  0  1  N  N  N  -21.142   8.359  -17.682  -2.481   3.118  -0.298  H5   6QD  24  
6QD  H6   H6   H  0  1  N  N  N  -20.520   6.457  -15.832  -0.792   2.206   1.481  H6   6QD  25  
6QD  H7   H7   H  0  1  N  N  N  -20.617   7.035  -14.134  -1.042   0.555   2.098  H7   6QD  26  
6QD  H8   H8   H  0  1  N  N  N  -23.034   7.700  -14.573  -0.097  -0.372   0.001  H8   6QD  27  
6QD  H9   H9   H  0  1  N  N  N  -22.902   6.925  -16.188   0.153   1.279  -0.616  H9   6QD  28  
6QD  H10  H10  H  0  1  N  N  N  -23.071   5.709  -13.460   1.660   1.764   1.293  H10  6QD  29  
6QD  H11  H11  H  0  1  N  N  N  -22.017   4.889  -14.662   1.410   0.113   1.909  H11  6QD  30  
6QD  H12  H12  H  0  1  N  N  N  -24.881   4.666  -14.389   2.605   0.837  -0.804  H12  6QD  31  
6QD  H13  H13  H  0  1  N  N  N  -23.841   3.940  -15.662   2.355  -0.813  -0.188  H13  6QD  32  
6QD  H14  H14  H  0  1  N  N  N  -25.020   3.004  -18.087   5.602   1.579  -1.295  H14  6QD  33  
6QD  H15  H15  H  0  1  N  N  N  -27.644   5.304  -17.923   7.366  -0.687   0.017  H15  6QD  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6QD  O17  P16  DOUB  N  N   1  
6QD  P16  O18  SING  N  N   2  
6QD  P16  O19  SING  N  N   3  
6QD  P16  C15  SING  N  N   4  
6QD  N08  C09  DOUB  Y  N   5  
6QD  N08  C07  SING  Y  N   6  
6QD  C09  N10  SING  Y  N   7  
6QD  C15  C14  SING  N  N   8  
6QD  O01  C02  DOUB  N  N   9  
6QD  C07  C02  SING  N  N  10  
6QD  C07  C06  DOUB  Y  N  11  
6QD  N10  C11  SING  N  N  12  
6QD  N10  C06  SING  Y  N  13  
6QD  C14  C13  SING  N  N  14  
6QD  C11  C12  SING  N  N  15  
6QD  C12  C13  SING  N  N  16  
6QD  C02  N03  SING  N  N  17  
6QD  C06  N05  SING  N  N  18  
6QD  N03  C04  DOUB  N  N  19  
6QD  N05  C04  SING  N  N  20  
6QD  C15  H1   SING  N  N  21  
6QD  C15  H2   SING  N  N  22  
6QD  C04  H3   SING  N  N  23  
6QD  N05  H4   SING  N  N  24  
6QD  C09  H5   SING  N  N  25  
6QD  C11  H6   SING  N  N  26  
6QD  C11  H7   SING  N  N  27  
6QD  C12  H8   SING  N  N  28  
6QD  C12  H9   SING  N  N  29  
6QD  C13  H10  SING  N  N  30  
6QD  C13  H11  SING  N  N  31  
6QD  C14  H12  SING  N  N  32  
6QD  C14  H13  SING  N  N  33  
6QD  O18  H14  SING  N  N  34  
6QD  O19  H15  SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6QD  InChI             InChI                 1.03   "InChI=1S/C10H15N4O4P/c15-10-8-9(11-6-12-10)14(7-13-8)4-2-1-3-5-19(16,17)18/h6-7H,1-5H2,(H,11,12,15)(H2,16,17,18)"  
6QD  InChIKey          InChI                 1.03   HKVZDTLGAPBOBY-UHFFFAOYSA-N  
6QD  SMILES_CANONICAL  CACTVS                3.385  "O[P](O)(=O)CCCCCn1cnc2C(=O)N=CNc12"  
6QD  SMILES            CACTVS                3.385  "O[P](O)(=O)CCCCCn1cnc2C(=O)N=CNc12"  
6QD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "c1nc2c(n1CCCCCP(=O)(O)O)NC=NC2=O"  
6QD  SMILES            "OpenEye OEToolkits"  2.0.5  "c1nc2c(n1CCCCCP(=O)(O)O)NC=NC2=O"  
#
_pdbx_chem_comp_identifier.comp_id          6QD
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "5-(6-oxidanylidene-3~{H}-purin-9-yl)pentylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6QD  "Create component"    2016-05-23  RCSB  
6QD  "Other modification"  2016-06-02  RCSB  
6QD  "Initial release"     2016-11-09  RCSB  
6QD  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6QD
_pdbx_chem_comp_synonyms.name        9-[5-(phosphonoheptyl]hypoxanthine
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
