data_4YD
# 
_chem_comp.id                                    4YD 
_chem_comp.name                                  "(2R)-2-methyl-4-[2-oxo-2-(pyrrolidin-1-yl)ethyl]piperazin-1-ium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H22 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2015-06-24 
_chem_comp.pdbx_modified_date                    2015-08-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        212.312 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4YD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5C7B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4YD C1  C1  C 0 1 N N N -15.235 -21.655 -0.567 -4.721 1.500  0.364  C1  4YD 1  
4YD C2  C2  C 0 1 N N R -15.816 -20.286 -0.886 -3.615 0.445  0.450  C2  4YD 2  
4YD C3  C3  C 0 1 N N N -15.816 -20.019 -2.389 -2.263 1.098  0.155  C3  4YD 3  
4YD N4  N1  N 0 1 N N N -16.216 -18.650 -2.740 -1.206 0.079  0.219  N4  4YD 4  
4YD C5  C4  C 0 1 N N N -16.355 -18.438 -4.193 0.117  0.678  -0.003 C5  4YD 5  
4YD C6  C5  C 0 1 N N N -15.178 -18.858 -5.072 1.186  -0.336 0.310  C6  4YD 6  
4YD C10 C6  C 0 1 N N N -14.938 -19.248 -8.681 4.408  1.003  -0.838 C10 4YD 7  
4YD C11 C7  C 0 1 N N N -16.255 -18.525 -8.533 4.911  -0.099 0.132  C11 4YD 8  
4YD C12 C8  C 0 1 N N N -16.665 -18.799 -7.113 3.627  -0.894 0.448  C12 4YD 9  
4YD C13 C9  C 0 1 N N N -15.335 -17.679 -2.089 -1.463 -1.002 -0.743 C13 4YD 10 
4YD C14 C10 C 0 1 N N N -15.393 -17.844 -0.581 -2.822 -1.637 -0.441 C14 4YD 11 
4YD O7  O1  O 0 1 N N N -14.093 -19.163 -4.590 0.878  -1.448 0.682  O7  4YD 12 
4YD N8  N2  N 0 1 N N N -15.377 -18.883 -6.405 2.487  -0.007 0.177  N8  4YD 13 
4YD C9  C11 C 0 1 N N N -14.254 -19.081 -7.335 3.001  1.303  -0.264 C9  4YD 14 
4YD N15 N3  N 1 1 N N N -15.000 -19.227 -0.201 -3.872 -0.615 -0.534 N15 4YD 15 
4YD H16 H1  H 0 1 N N N -15.249 -21.816 0.521  -5.684 1.034  0.574  H16 4YD 16 
4YD H18 H2  H 0 1 N N N -15.837 -22.433 -1.060 -4.530 2.286  1.094  H18 4YD 17 
4YD H17 H3  H 0 1 N N N -14.198 -21.707 -0.931 -4.736 1.929  -0.638 H17 4YD 18 
4YD H19 H4  H 0 1 N N N -16.851 -20.242 -0.516 -3.601 0.015  1.451  H19 4YD 19 
4YD H20 H5  H 0 1 N N N -16.516 -20.720 -2.867 -2.283 1.540  -0.842 H20 4YD 20 
4YD H21 H6  H 0 1 N N N -14.801 -20.195 -2.774 -2.066 1.875  0.893  H21 4YD 21 
4YD H23 H8  H 0 1 N N N -16.524 -17.364 -4.357 0.205  0.989  -1.044 H23 4YD 22 
4YD H22 H9  H 0 1 N N N -17.237 -19.003 -4.528 0.236  1.546  0.646  H22 4YD 23 
4YD H27 H10 H 0 1 N N N -15.103 -20.313 -8.903 5.045  1.886  -0.790 H27 4YD 24 
4YD H26 H11 H 0 1 N N N -14.335 -18.795 -9.482 4.342  0.625  -1.858 H26 4YD 25 
4YD H28 H12 H 0 1 N N N -16.129 -17.445 -8.702 5.649  -0.735 -0.357 H28 4YD 26 
4YD H29 H13 H 0 1 N N N -17.000 -18.922 -9.238 5.324  0.344  1.039  H29 4YD 27 
4YD H30 H14 H 0 1 N N N -17.282 -17.980 -6.715 3.571  -1.776 -0.190 H30 4YD 28 
4YD H31 H15 H 0 1 N N N -17.220 -19.746 -7.038 3.624  -1.192 1.497  H31 4YD 29 
4YD H33 H16 H 0 1 N N N -14.302 -17.839 -2.432 -1.469 -0.594 -1.754 H33 4YD 30 
4YD H32 H17 H 0 1 N N N -15.657 -16.661 -2.355 -0.682 -1.757 -0.659 H32 4YD 31 
4YD H34 H18 H 0 1 N N N -14.703 -17.128 -0.110 -3.021 -2.430 -1.162 H34 4YD 32 
4YD H35 H19 H 0 1 N N N -16.418 -17.649 -0.233 -2.811 -2.056 0.565  H35 4YD 33 
4YD H25 H20 H 0 1 N N N -13.678 -19.981 -7.071 3.073  1.987  0.581  H25 4YD 34 
4YD H24 H21 H 0 1 N N N -13.587 -18.207 -7.338 2.357  1.721  -1.038 H24 4YD 35 
4YD H37 H22 H 0 1 N N N -15.113 -19.329 0.787  -4.770 -1.037 -0.347 H37 4YD 36 
4YD H36 H23 H 0 1 N N N -14.039 -19.361 -0.442 -3.875 -0.219 -1.462 H36 4YD 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4YD C10 C11 SING N N 1  
4YD C10 C9  SING N N 2  
4YD C11 C12 SING N N 3  
4YD C9  N8  SING N N 4  
4YD C12 N8  SING N N 5  
4YD N8  C6  SING N N 6  
4YD C6  O7  DOUB N N 7  
4YD C6  C5  SING N N 8  
4YD C5  N4  SING N N 9  
4YD N4  C3  SING N N 10 
4YD N4  C13 SING N N 11 
4YD C3  C2  SING N N 12 
4YD C13 C14 SING N N 13 
4YD C2  C1  SING N N 14 
4YD C2  N15 SING N N 15 
4YD C14 N15 SING N N 16 
4YD C1  H16 SING N N 17 
4YD C1  H18 SING N N 18 
4YD C1  H17 SING N N 19 
4YD C2  H19 SING N N 20 
4YD C3  H20 SING N N 21 
4YD C3  H21 SING N N 22 
4YD C5  H23 SING N N 23 
4YD C5  H22 SING N N 24 
4YD C10 H27 SING N N 25 
4YD C10 H26 SING N N 26 
4YD C11 H28 SING N N 27 
4YD C11 H29 SING N N 28 
4YD C12 H30 SING N N 29 
4YD C12 H31 SING N N 30 
4YD C13 H33 SING N N 31 
4YD C13 H32 SING N N 32 
4YD C14 H34 SING N N 33 
4YD C14 H35 SING N N 34 
4YD C9  H25 SING N N 35 
4YD C9  H24 SING N N 36 
4YD N15 H37 SING N N 37 
4YD N15 H36 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4YD SMILES           ACDLabs              12.01 "CC1[NH2+]CCN(C1)CC(=O)N2CCCC2"                                                                  
4YD InChI            InChI                1.03  "InChI=1S/C11H21N3O/c1-10-8-13(7-4-12-10)9-11(15)14-5-2-3-6-14/h10,12H,2-9H2,1H3/p+1/t10-/m1/s1" 
4YD InChIKey         InChI                1.03  FZALEHHAYIXXFT-SNVBAGLBSA-O                                                                      
4YD SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1CN(CC[NH2+]1)CC(=O)N2CCCC2"                                                             
4YD SMILES           CACTVS               3.385 "C[CH]1CN(CC[NH2+]1)CC(=O)N2CCCC2"                                                               
4YD SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H]1CN(CC[NH2+]1)CC(=O)N2CCCC2"                                                             
4YD SMILES           "OpenEye OEToolkits" 1.9.2 "CC1CN(CC[NH2+]1)CC(=O)N2CCCC2"                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4YD "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-methyl-4-[2-oxo-2-(pyrrolidin-1-yl)ethyl]piperazin-1-ium"  
4YD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[(3R)-3-methylpiperazin-4-ium-1-yl]-1-pyrrolidin-1-yl-ethanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4YD "Create component" 2015-06-24 RCSB 
4YD "Initial release"  2015-08-12 RCSB 
# 
