data_3YD
# 
_chem_comp.id                                    3YD 
_chem_comp.name                                  "(S)-2-(7-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)heptanamido)pentanedioic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H25 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-10 
_chem_comp.pdbx_modified_date                    2016-04-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        407.421 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3YD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ZYZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3YD N1  N1  N 0 1 N N N -22.371 16.952 23.890 -7.775  -1.566 0.525  N1  3YD 1  
3YD C2  C1  C 0 1 N N N -21.959 15.888 24.674 -8.819  -1.381 -0.250 C2  3YD 2  
3YD N3  N2  N 0 1 N N N -22.753 14.712 24.769 -8.928  -0.301 -1.075 N3  3YD 3  
3YD C4  C2  C 0 1 N N N -23.909 14.564 24.016 -7.943  0.625  -1.116 C4  3YD 4  
3YD N5  N3  N 0 1 Y N N -24.212 17.577 22.345 -5.580  -0.632 1.226  N5  3YD 5  
3YD C6  C3  C 0 1 Y N N -25.253 17.084 21.879 -4.883  0.494  0.868  C6  3YD 6  
3YD C7  C4  C 0 1 Y N N -25.406 15.912 22.358 -5.582  1.185  -0.049 C7  3YD 7  
3YD C8  C5  C 0 1 Y N N -24.340 15.589 23.237 -6.815  0.438  -0.287 C8  3YD 8  
3YD C9  C6  C 0 1 Y N N -23.490 16.811 23.203 -6.758  -0.692 0.541  C9  3YD 9  
3YD O10 O1  O 0 1 N N N -24.503 13.504 24.135 -8.027  1.595  -1.849 O10 3YD 10 
3YD N11 N4  N 0 1 N N N -20.762 15.981 25.438 -9.833  -2.306 -0.229 N11 3YD 11 
3YD C12 C7  C 0 1 N N N -22.002 18.275 16.936 2.501   0.218  -0.273 C12 3YD 12 
3YD C13 C8  C 0 1 N N N -22.968 17.075 17.078 1.398   0.715  0.664  C13 3YD 13 
3YD C14 C9  C 0 1 N N N -24.369 17.532 17.556 0.033   0.308  0.105  C14 3YD 14 
3YD C15 C10 C 0 1 N N N -24.490 17.378 19.080 -1.070  0.805  1.041  C15 3YD 15 
3YD C16 C11 C 0 1 N N N -25.971 17.213 19.475 -2.435  0.398  0.482  C16 3YD 16 
3YD C17 C12 C 0 1 N N N -20.921 17.910 15.887 3.845   0.619  0.278  C17 3YD 17 
3YD O18 O2  O 0 1 N N N -20.990 16.806 15.394 3.914   1.242  1.317  O18 3YD 18 
3YD N19 N5  N 0 1 N N N -19.835 18.772 15.444 4.971   0.287  -0.384 N19 3YD 19 
3YD C20 C13 C 0 1 N N S -19.491 20.126 15.841 6.278   0.677  0.151  C20 3YD 20 
3YD C21 C14 C 0 1 N N N -20.634 21.093 15.685 7.349   -0.285 -0.368 C21 3YD 21 
3YD C22 C15 C 0 1 N N N -20.827 21.546 14.242 7.088   -1.687 0.185  C22 3YD 22 
3YD C23 C16 C 0 1 N N N -22.112 22.349 14.173 8.143   -2.634 -0.327 C23 3YD 23 
3YD O24 O3  O 0 1 N N N -23.186 21.787 13.823 9.014   -2.228 -1.059 O24 3YD 24 
3YD O25 O4  O 0 1 N N N -22.111 23.573 14.468 8.114   -3.927 0.031  O25 3YD 25 
3YD C26 C17 C 0 1 N N N -18.966 20.194 17.254 6.604   2.079  -0.293 C26 3YD 26 
3YD O27 O5  O 0 1 N N N -17.820 19.758 17.516 5.825   2.691  -0.985 O27 3YD 27 
3YD O28 O6  O 0 1 N N N -19.665 20.709 18.170 7.760   2.650  0.081  O28 3YD 28 
3YD C29 C18 C 0 1 N N N -26.218 17.762 20.890 -3.539  0.895  1.418  C29 3YD 29 
3YD H1  H1  H 0 1 N N N -22.473 13.979 25.389 -9.713  -0.197 -1.635 H1  3YD 30 
3YD H2  H2  H 0 1 N N N -23.918 18.500 22.098 -5.279  -1.289 1.873  H2  3YD 31 
3YD H3  H3  H 0 1 N N N -26.232 15.256 22.127 -5.289  2.113  -0.517 H3  3YD 32 
3YD H4  H4  H 0 1 N N N -20.215 16.817 25.410 -9.772  -3.080 0.352  H4  3YD 33 
3YD H5  H5  H 0 1 N N N -20.468 15.210 26.003 -10.611 -2.184 -0.795 H5  3YD 34 
3YD H6  H6  H 0 1 N N N -21.524 18.484 17.905 2.450   -0.868 -0.350 H6  3YD 35 
3YD H7  H7  H 0 1 N N N -22.559 19.163 16.602 2.366   0.660  -1.260 H7  3YD 36 
3YD H8  H8  H 0 1 N N N -23.067 16.578 16.102 1.533   0.274  1.651  H8  3YD 37 
3YD H9  H9  H 0 1 N N N -22.553 16.366 17.810 1.449   1.801  0.741  H9  3YD 38 
3YD H10 H10 H 0 1 N N N -24.518 18.588 17.285 -0.102  0.750  -0.883 H10 3YD 39 
3YD H11 H11 H 0 1 N N N -25.138 16.916 17.067 -0.019  -0.778 0.027  H11 3YD 40 
3YD H12 H12 H 0 1 N N N -23.925 16.491 19.403 -0.936  0.364  2.028  H12 3YD 41 
3YD H13 H13 H 0 1 N N N -24.079 18.273 19.571 -1.019  1.891  1.118  H13 3YD 42 
3YD H14 H14 H 0 1 N N N -26.600 17.763 18.759 -2.570  0.840  -0.505 H14 3YD 43 
3YD H15 H15 H 0 1 N N N -26.235 16.145 19.450 -2.487  -0.688 0.404  H15 3YD 44 
3YD H16 H16 H 0 1 N N N -19.230 18.368 14.758 4.916   -0.211 -1.215 H16 3YD 45 
3YD H17 H17 H 0 1 N N N -18.683 20.473 15.180 6.251   0.637  1.240  H17 3YD 46 
3YD H18 H18 H 0 1 N N N -20.435 21.977 16.308 7.316   -0.311 -1.457 H18 3YD 47 
3YD H19 H19 H 0 1 N N N -21.558 20.604 16.027 8.332   0.057  -0.043 H19 3YD 48 
3YD H20 H20 H 0 1 N N N -20.898 20.669 13.581 7.121   -1.660 1.274  H20 3YD 49 
3YD H21 H21 H 0 1 N N N -19.978 22.172 13.930 6.105   -2.028 -0.140 H21 3YD 50 
3YD H22 H22 H 0 1 N N N -22.990 23.922 14.376 8.812   -4.496 -0.323 H22 3YD 51 
3YD H23 H23 H 0 1 N N N -19.181 20.689 18.987 7.925   3.551  -0.228 H23 3YD 52 
3YD H24 H24 H 0 1 N N N -26.046 18.849 20.897 -3.487  1.982  1.496  H24 3YD 53 
3YD H25 H25 H 0 1 N N N -27.256 17.553 21.189 -3.404  0.454  2.405  H25 3YD 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3YD O24 C23 DOUB N N 1  
3YD C23 C22 SING N N 2  
3YD C23 O25 SING N N 3  
3YD C22 C21 SING N N 4  
3YD O18 C17 DOUB N N 5  
3YD N19 C20 SING N N 6  
3YD N19 C17 SING N N 7  
3YD C21 C20 SING N N 8  
3YD C20 C26 SING N N 9  
3YD C17 C12 SING N N 10 
3YD C12 C13 SING N N 11 
3YD C13 C14 SING N N 12 
3YD C26 O27 DOUB N N 13 
3YD C26 O28 SING N N 14 
3YD C14 C15 SING N N 15 
3YD C15 C16 SING N N 16 
3YD C16 C29 SING N N 17 
3YD C29 C6  SING N N 18 
3YD C6  N5  SING Y N 19 
3YD C6  C7  DOUB Y N 20 
3YD N5  C9  SING Y N 21 
3YD C7  C8  SING Y N 22 
3YD C9  C8  DOUB Y N 23 
3YD C9  N1  SING N N 24 
3YD C8  C4  SING N N 25 
3YD N1  C2  DOUB N N 26 
3YD C4  O10 DOUB N N 27 
3YD C4  N3  SING N N 28 
3YD C2  N3  SING N N 29 
3YD C2  N11 SING N N 30 
3YD N3  H1  SING N N 31 
3YD N5  H2  SING N N 32 
3YD C7  H3  SING N N 33 
3YD N11 H4  SING N N 34 
3YD N11 H5  SING N N 35 
3YD C12 H6  SING N N 36 
3YD C12 H7  SING N N 37 
3YD C13 H8  SING N N 38 
3YD C13 H9  SING N N 39 
3YD C14 H10 SING N N 40 
3YD C14 H11 SING N N 41 
3YD C15 H12 SING N N 42 
3YD C15 H13 SING N N 43 
3YD C16 H14 SING N N 44 
3YD C16 H15 SING N N 45 
3YD N19 H16 SING N N 46 
3YD C20 H17 SING N N 47 
3YD C21 H18 SING N N 48 
3YD C21 H19 SING N N 49 
3YD C22 H20 SING N N 50 
3YD C22 H21 SING N N 51 
3YD O25 H22 SING N N 52 
3YD O28 H23 SING N N 53 
3YD C29 H24 SING N N 54 
3YD C29 H25 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3YD SMILES           ACDLabs              12.01 "N1=C(NC(=O)c2cc(nc12)CCCCCCC(=O)NC(C(=O)O)CCC(O)=O)N"                                                                                                                            
3YD InChI            InChI                1.03  "InChI=1S/C18H25N5O6/c19-18-22-15-11(16(27)23-18)9-10(20-15)5-3-1-2-4-6-13(24)21-12(17(28)29)7-8-14(25)26/h9,12H,1-8H2,(H,21,24)(H,25,26)(H,28,29)(H4,19,20,22,23,27)/t12-/m0/s1" 
3YD InChIKey         InChI                1.03  YFTJOYZLYVUUOD-LBPRGKRZSA-N                                                                                                                                                       
3YD SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2[nH]c(CCCCCCC(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1"                                                                                                                      
3YD SMILES           CACTVS               3.385 "NC1=Nc2[nH]c(CCCCCCC(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1"                                                                                                                        
3YD SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCC(=O)N[C@@H](CCC(=O)O)C(=O)O"                                                                                                                    
3YD SMILES           "OpenEye OEToolkits" 1.9.2 "c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCC(=O)NC(CCC(=O)O)C(=O)O"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3YD "SYSTEMATIC NAME" ACDLabs              12.01 "N-[7-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)heptanoyl]-L-glutamic acid"                   
3YD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-[7-(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-6-yl)heptanoylamino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3YD "Create component" 2014-12-10 RCSB 
3YD "Modify name"      2015-06-08 RCSB 
3YD "Initial release"  2016-04-20 RCSB 
# 
