data_1KD
#

_chem_comp.id                                   1KD
_chem_comp.name                                 "1-(methanesulfonyl)-1'-(2-methyl-L-alanyl-O-benzyl-D-seryl)-1,2-dihydrospiro[indole-3,4'-piperidine]"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H36 N4 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-06-22
_chem_comp.pdbx_modified_date                   2021-12-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       528.664
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1KD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7NA8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1KD  C28  C1   C  0  1  Y  N  N  123.900  132.930   89.793   4.888   0.669  -0.756  C28  1KD   1  
1KD  C26  C2   C  0  1  N  N  N  124.240  132.947   92.145   3.571  -0.557   0.750  C26  1KD   2  
1KD  C25  C3   C  0  1  N  N  N  126.028  135.286   93.393   0.637  -0.159   0.871  C25  1KD   3  
1KD  C24  C4   C  0  1  N  N  N  125.887  134.326   92.213   1.527   0.633  -0.092  C24  1KD   4  
1KD  C11  C5   C  0  1  N  N  N  127.574  139.101   95.296  -2.359   0.159  -0.411  C11  1KD   5  
1KD  C10  C6   C  0  1  N  N  N  125.993  134.681   98.855  -5.186  -4.295  -1.094  C10  1KD   6  
1KD  C17  C7   C  0  1  Y  N  N  133.032  138.396   93.595  -6.551   4.690   1.050  C17  1KD   7  
1KD  C18  C8   C  0  1  Y  N  N  133.186  138.871   94.886  -6.960   3.619   0.277  C18  1KD   8  
1KD  C16  C9   C  0  1  Y  N  N  131.797  138.436   92.972  -5.203   4.938   1.228  C16  1KD   9  
1KD  C15  C10  C  0  1  Y  N  N  130.709  138.955   93.646  -4.264   4.114   0.636  C15  1KD  10  
1KD  C14  C11  C  0  1  Y  N  N  130.866  139.429   94.937  -4.673   3.043  -0.136  C14  1KD  11  
1KD  C13  C12  C  0  1  N  N  N  129.669  139.995   95.679  -3.649   2.145  -0.781  C13  1KD  12  
1KD  C23  C13  C  0  1  N  N  N  124.534  134.311   91.616   2.729  -0.220  -0.488  C23  1KD  13  
1KD  C19  C14  C  0  1  Y  N  N  132.099  139.392   95.562  -6.021   2.792  -0.310  C19  1KD  14  
1KD  C21  C15  C  0  1  N  N  N  124.802  136.755   91.832   1.391  -2.310  -0.226  C21  1KD  15  
1KD  C22  C16  C  0  1  N  N  N  123.824  135.591   91.790   2.274  -1.501  -1.181  C22  1KD  16  
1KD  C02  C17  C  0  1  N  N  N  126.098  137.867   93.789  -0.985  -1.834   0.124  C02  1KD  17  
1KD  C03  C18  C  0  1  N  N  R  126.981  137.728   95.021  -2.092  -0.940   0.619  C03  1KD  18  
1KD  C05  C19  C  0  1  N  N  N  126.540  136.338   97.082  -3.860  -2.388  -0.226  C05  1KD  19  
1KD  C07  C20  C  0  1  N  N  N  125.623  136.037   98.261  -5.112  -3.203  -0.025  C07  1KD  20  
1KD  C09  C21  C  0  1  N  N  N  125.774  137.121   99.325  -6.337  -2.293  -0.139  C09  1KD  21  
1KD  C29  C22  C  0  1  Y  N  N  124.487  134.169   90.094   3.656   0.562  -1.386  C29  1KD  22  
1KD  C30  C23  C  0  1  Y  N  N  124.903  135.017   89.057   3.455   1.128  -2.630  C30  1KD  23  
1KD  C31  C24  C  0  1  Y  N  N  124.732  134.625   87.726   4.483   1.805  -3.260  C31  1KD  24  
1KD  C32  C25  C  0  1  Y  N  N  124.144  133.382   87.423   5.715   1.916  -2.641  C32  1KD  25  
1KD  C33  C26  C  0  1  Y  N  N  123.731  132.543   88.457   5.922   1.350  -1.401  C33  1KD  26  
1KD  C37  C27  C  0  1  N  N  N  122.152  129.923   90.083   6.018   1.434   2.559  C37  1KD  27  
1KD  N04  N1   N  0  1  N  N  N  126.156  137.381   96.155  -3.309  -1.732   0.814  N04  1KD  28  
1KD  N08  N2   N  0  1  N  N  N  124.252  136.021   97.785  -5.084  -3.823   1.307  N08  1KD  29  
1KD  N20  N3   N  0  1  N  N  N  125.664  136.695   93.051   0.301  -1.449   0.252  N20  1KD  30  
1KD  N27  N4   N  0  1  N  N  N  123.554  132.253   91.081   4.887   0.034   0.488  N27  1KD  31  
1KD  O01  O1   O  0  1  N  N  N  125.759  138.945   93.433  -1.250  -2.900  -0.389  O01  1KD  32  
1KD  O06  O2   O  0  1  N  N  N  127.541  135.730   96.925  -3.349  -2.323  -1.324  O06  1KD  33  
1KD  O12  O3   O  0  1  N  N  N  128.786  138.953   95.963  -3.327   1.074   0.108  O12  1KD  34  
1KD  O35  O4   O  0  1  N  N  N  120.960  132.018   91.318   7.314   0.076   0.663  O35  1KD  35  
1KD  O36  O5   O  0  1  N  N  N  122.198  130.710   92.686   5.958  -1.219   2.278  O36  1KD  36  
1KD  S34  S1   S  0  1  N  N  N  122.201  131.245   91.324   6.183  -0.041   1.516  S34  1KD  37  
1KD  H1   H1   H  0  1  N  N  N  123.599  133.012   93.036   3.128  -0.113   1.641  H1   1KD  38  
1KD  H2   H2   H  0  1  N  N  N  125.174  132.426   92.402   3.656  -1.637   0.867  H2   1KD  39  
1KD  H3   H3   H  0  1  N  N  N  125.370  134.942   94.205   1.171  -0.331   1.806  H3   1KD  40  
1KD  H4   H4   H  0  1  N  N  N  127.073  135.268   93.736  -0.276   0.402   1.071  H4   1KD  41  
1KD  H5   H5   H  0  1  N  N  N  126.124  133.310   92.562   0.956   0.893  -0.984  H5   1KD  42  
1KD  H6   H6   H  0  1  N  N  N  126.606  134.624   91.436   1.872   1.544   0.397  H6   1KD  43  
1KD  H7   H7   H  0  1  N  N  N  127.740  139.627   94.344  -1.432   0.692  -0.623  H7   1KD  44  
1KD  H8   H8   H  0  1  N  N  N  126.880  139.683   95.920  -2.739  -0.289  -1.330  H8   1KD  45  
1KD  H9   H9   H  0  1  N  N  N  125.333  134.461   99.707  -4.314  -4.943  -1.013  H9   1KD  46  
1KD  H10  H10  H  0  1  N  N  N  125.875  133.901   98.089  -6.092  -4.885  -0.949  H10  1KD  47  
1KD  H11  H11  H  0  1  N  N  N  127.038  134.704   99.198  -5.207  -3.836  -2.082  H11  1KD  48  
1KD  H12  H12  H  0  1  N  N  N  133.884  137.990   93.069  -7.284   5.336   1.509  H12  1KD  49  
1KD  H13  H13  H  0  1  N  N  N  134.154  138.835   95.364  -8.013   3.428   0.134  H13  1KD  50  
1KD  H14  H14  H  0  1  N  N  N  131.685  138.064   91.965  -4.883   5.775   1.831  H14  1KD  51  
1KD  H15  H15  H  0  1  N  N  N  129.741  138.991   93.168  -3.211   4.308   0.775  H15  1KD  52  
1KD  H16  H16  H  0  1  N  N  N  130.002  140.464   96.617  -4.055   1.739  -1.708  H16  1KD  53  
1KD  H17  H17  H  0  1  N  N  N  129.166  140.746   95.052  -2.749   2.719  -1.001  H17  1KD  54  
1KD  H18  H18  H  0  1  N  N  N  132.211  139.767   96.569  -6.341   1.955  -0.913  H18  1KD  55  
1KD  H19  H19  H  0  1  N  N  N  125.442  136.718   90.938   0.974  -3.169  -0.752  H19  1KD  56  
1KD  H20  H20  H  0  1  N  N  N  124.236  137.698   91.839   1.984  -2.653   0.622  H20  1KD  57  
1KD  H21  H21  H  0  1  N  N  N  123.130  135.735   90.949   1.706  -1.248  -2.076  H21  1KD  58  
1KD  H22  H22  H  0  1  N  N  N  123.257  135.563   92.732   3.147  -2.093  -1.459  H22  1KD  59  
1KD  H23  H23  H  0  1  N  N  N  127.776  136.987   94.849  -1.798  -0.487   1.566  H23  1KD  60  
1KD  H24  H24  H  0  1  N  N  N  125.110  136.898  100.173  -6.357  -1.834  -1.127  H24  1KD  61  
1KD  H25  H25  H  0  1  N  N  N  126.817  137.150   99.674  -7.242  -2.883   0.006  H25  1KD  62  
1KD  H26  H26  H  0  1  N  N  N  125.504  138.097   98.895  -6.283  -1.515   0.623  H26  1KD  63  
1KD  H27  H27  H  0  1  N  N  N  125.355  135.971   89.286   2.493   1.040  -3.112  H27  1KD  64  
1KD  H28  H28  H  0  1  N  N  N  125.052  135.278   86.927   4.325   2.245  -4.233  H28  1KD  65  
1KD  H29  H29  H  0  1  N  N  N  124.014  133.080   86.394   6.518   2.444  -3.133  H29  1KD  66  
1KD  H30  H30  H  0  1  N  N  N  123.278  131.590   88.227   6.886   1.441  -0.923  H30  1KD  67  
1KD  H31  H31  H  0  1  N  N  N  121.272  129.286   90.259   5.070   1.395   3.096  H31  1KD  68  
1KD  H32  H32  H  0  1  N  N  N  122.089  130.366   89.078   6.840   1.466   3.275  H32  1KD  69  
1KD  H33  H33  H  0  1  N  N  N  123.066  129.315   90.159   6.046   2.326   1.934  H33  1KD  70  
1KD  H34  H34  H  0  1  N  N  N  125.298  137.874   96.303  -3.718  -1.785   1.692  H34  1KD  71  
1KD  H35  H35  H  0  1  N  N  N  123.636  135.824   98.548  -4.284  -4.429   1.407  H35  1KD  72  
1KD  H36  H36  H  0  1  N  N  N  124.024  136.913   97.394  -5.100  -3.121   2.032  H36  1KD  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1KD  C32  C31  DOUB  Y  N   1  
1KD  C32  C33  SING  Y  N   2  
1KD  C31  C30  SING  Y  N   3  
1KD  C33  C28  DOUB  Y  N   4  
1KD  C30  C29  DOUB  Y  N   5  
1KD  C28  C29  SING  Y  N   6  
1KD  C28  N27  SING  N  N   7  
1KD  C37  S34  SING  N  N   8  
1KD  C29  C23  SING  N  N   9  
1KD  N27  S34  SING  N  N  10  
1KD  N27  C26  SING  N  N  11  
1KD  O35  S34  DOUB  N  N  12  
1KD  S34  O36  DOUB  N  N  13  
1KD  C23  C22  SING  N  N  14  
1KD  C23  C26  SING  N  N  15  
1KD  C23  C24  SING  N  N  16  
1KD  C22  C21  SING  N  N  17  
1KD  C21  N20  SING  N  N  18  
1KD  C24  C25  SING  N  N  19  
1KD  C16  C17  DOUB  Y  N  20  
1KD  C16  C15  SING  Y  N  21  
1KD  N20  C25  SING  N  N  22  
1KD  N20  C02  SING  N  N  23  
1KD  O01  C02  DOUB  N  N  24  
1KD  C17  C18  SING  Y  N  25  
1KD  C15  C14  DOUB  Y  N  26  
1KD  C02  C03  SING  N  N  27  
1KD  C18  C19  DOUB  Y  N  28  
1KD  C14  C19  SING  Y  N  29  
1KD  C14  C13  SING  N  N  30  
1KD  C03  C11  SING  N  N  31  
1KD  C03  N04  SING  N  N  32  
1KD  C11  O12  SING  N  N  33  
1KD  C13  O12  SING  N  N  34  
1KD  N04  C05  SING  N  N  35  
1KD  O06  C05  DOUB  N  N  36  
1KD  C05  C07  SING  N  N  37  
1KD  N08  C07  SING  N  N  38  
1KD  C07  C10  SING  N  N  39  
1KD  C07  C09  SING  N  N  40  
1KD  C26  H1   SING  N  N  41  
1KD  C26  H2   SING  N  N  42  
1KD  C25  H3   SING  N  N  43  
1KD  C25  H4   SING  N  N  44  
1KD  C24  H5   SING  N  N  45  
1KD  C24  H6   SING  N  N  46  
1KD  C11  H7   SING  N  N  47  
1KD  C11  H8   SING  N  N  48  
1KD  C10  H9   SING  N  N  49  
1KD  C10  H10  SING  N  N  50  
1KD  C10  H11  SING  N  N  51  
1KD  C17  H12  SING  N  N  52  
1KD  C18  H13  SING  N  N  53  
1KD  C16  H14  SING  N  N  54  
1KD  C15  H15  SING  N  N  55  
1KD  C13  H16  SING  N  N  56  
1KD  C13  H17  SING  N  N  57  
1KD  C19  H18  SING  N  N  58  
1KD  C21  H19  SING  N  N  59  
1KD  C21  H20  SING  N  N  60  
1KD  C22  H21  SING  N  N  61  
1KD  C22  H22  SING  N  N  62  
1KD  C03  H23  SING  N  N  63  
1KD  C09  H24  SING  N  N  64  
1KD  C09  H25  SING  N  N  65  
1KD  C09  H26  SING  N  N  66  
1KD  C30  H27  SING  N  N  67  
1KD  C31  H28  SING  N  N  68  
1KD  C32  H29  SING  N  N  69  
1KD  C33  H30  SING  N  N  70  
1KD  C37  H31  SING  N  N  71  
1KD  C37  H32  SING  N  N  72  
1KD  C37  H33  SING  N  N  73  
1KD  N04  H34  SING  N  N  74  
1KD  N08  H35  SING  N  N  75  
1KD  N08  H36  SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1KD  SMILES            ACDLabs               12.01  "CC(C)(N)C(=O)NC(COCc1ccccc1)C(=O)N1CCC2(CC1)CN(c1ccccc12)S(C)(=O)=O"  
1KD  InChI             InChI                 1.03   "InChI=1S/C27H36N4O5S/c1-26(2,28)25(33)29-22(18-36-17-20-9-5-4-6-10-20)24(32)30-15-13-27(14-16-30)19-31(37(3,34)35)23-12-8-7-11-21(23)27/h4-12,22H,13-19,28H2,1-3H3,(H,29,33)/t22-/m1/s1"  
1KD  InChIKey          InChI                 1.03   UMUPQWIGCOZEOY-JOCHJYFZSA-N  
1KD  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(N)C(=O)N[C@H](COCc1ccccc1)C(=O)N2CCC3(CC2)CN(c4ccccc34)[S](C)(=O)=O"  
1KD  SMILES            CACTVS                3.385  "CC(C)(N)C(=O)N[CH](COCc1ccccc1)C(=O)N2CCC3(CC2)CN(c4ccccc34)[S](C)(=O)=O"  
1KD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C(=O)N[C@H](COCc1ccccc1)C(=O)N2CCC3(CC2)CN(c4c3cccc4)S(=O)(=O)C)N"  
1KD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C(=O)NC(COCc1ccccc1)C(=O)N2CCC3(CC2)CN(c4c3cccc4)S(=O)(=O)C)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1KD  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-(methanesulfonyl)-1'-(2-methyl-L-alanyl-O-benzyl-D-seryl)-1,2-dihydrospiro[indole-3,4'-piperidine]"  
1KD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-azanyl-2-methyl-~{N}-[(2~{R})-1-(1-methylsulfonylspiro[2~{H}-indole-3,4'-piperidine]-1'-yl)-1-oxidanylidene-3-phenylmethoxy-propan-2-yl]propanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1KD  "Create component"  2021-06-22  RCSB  
1KD  "Initial release"   2021-12-15  RCSB  
##
