data_YUC
# 
_chem_comp.id                                    YUC 
_chem_comp.name                                  "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H27 N5 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-21 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        537.587 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YUC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PGQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YUC C10  C1  C 0 1 Y N N N N N -21.666 -11.936 9.790  0.842  0.347  -0.745 C10  YUC 1  
YUC C11  C2  C 0 1 Y N N N N N -21.018 -12.263 8.452  2.247  -0.032 -0.480 C11  YUC 2  
YUC C12  C3  C 0 1 Y N N N N N -21.584 -13.211 7.643  3.289  0.765  -0.967 C12  YUC 3  
YUC C13  C4  C 0 1 Y N N N N N -21.009 -13.576 6.437  4.599  0.419  -0.725 C13  YUC 4  
YUC C14  C5  C 0 1 Y N N N N N -19.778 -13.086 6.102  4.897  -0.726 0.005  C14  YUC 5  
YUC C01  C6  C 0 1 N N N N N N -22.706 -12.470 15.648 -4.142 3.802  -0.781 C01  YUC 6  
YUC C02  C7  C 0 1 N N S N N N -23.283 -12.070 14.287 -3.480 2.435  -0.962 C02  YUC 7  
YUC C03  C8  C 0 1 Y N N N N N -22.680 -12.880 13.125 -2.069 2.487  -0.435 C03  YUC 8  
YUC C04  C9  C 0 1 Y N N N N N -22.362 -12.219 11.912 -1.168 1.472  -0.750 C04  YUC 9  
YUC C06  C10 C 0 1 Y N N N N N -22.127 -10.736 10.309 -0.076 -0.357 -1.505 C06  YUC 10 
YUC C07  C11 C 0 1 N N N N N N -22.297 -9.418  9.678  0.183  -1.619 -2.198 C07  YUC 11 
YUC C17  C12 C 0 1 N N N N N N -19.120 -11.033 3.395  6.755  1.009  1.954  C17  YUC 12 
YUC C20  C13 C 0 1 Y N N N N N -19.146 -12.165 6.942  3.858  -1.533 0.500  C20  YUC 13 
YUC C21  C14 C 0 1 N N N N N N -17.748 -11.668 6.564  4.160  -2.713 1.253  C21  YUC 14 
YUC C23  C15 C 0 1 Y N N N N N -19.770 -11.750 8.129  2.532  -1.178 0.258  C23  YUC 15 
YUC C24  C16 C 0 1 Y N N N N N -21.797 -12.898 10.834 0.145  1.539  -0.248 C24  YUC 16 
YUC C25  C17 C 0 1 Y N N N N N -21.487 -14.261 10.943 0.530  2.614  0.557  C25  YUC 17 
YUC C26  C18 C 0 1 Y N N N N N -21.832 -14.913 12.122 -0.370 3.598  0.853  C26  YUC 18 
YUC C27  C19 C 0 1 Y N N N N N -22.396 -14.239 13.211 -1.667 3.537  0.360  C27  YUC 19 
YUC C29  C20 C 0 1 N N N N N N -25.391 -13.385 14.774 -4.895 0.242  -0.816 C29  YUC 20 
YUC C30  C21 C 0 1 N N N N N N -26.822 -13.161 14.501 -5.530 -0.456 0.391  C30  YUC 21 
YUC C31  C22 C 0 1 N N N N N N -27.754 -12.783 15.644 -5.231 -1.948 0.525  C31  YUC 22 
YUC C32  C23 C 0 1 N N N N N N -28.828 -13.709 15.057 -6.680 -2.106 1.021  C32  YUC 23 
YUC C33  C24 C 0 1 N N N N N N -29.384 -14.751 16.040 -7.383 -3.349 0.470  C33  YUC 24 
YUC C35  C25 C 0 1 N N N N N N -27.865 -14.175 13.994 -7.007 -0.818 0.244  C35  YUC 25 
YUC C37  C26 C 0 1 N N N N N N -25.584 -11.526 13.438 -4.452 1.417  1.100  C37  YUC 26 
YUC N05  N1  N 0 1 Y N N N N N -22.534 -10.933 11.569 -1.278 0.326  -1.502 N05  YUC 27 
YUC N15  N2  N 0 1 N N N N N N -19.158 -13.480 4.824  6.220  -1.072 0.247  N15  YUC 28 
YUC N22  N3  N 0 1 N N N N N N -16.688 -11.271 6.257  4.399  -3.649 1.851  N22  YUC 29 
YUC N28  N4  N 0 1 N N N N N N -24.729 -12.258 14.270 -4.240 1.423  -0.224 N28  YUC 30 
YUC N34  N5  N 0 1 N N N N N N -30.550 -15.359 15.432 -8.709 -3.476 1.089  N34  YUC 31 
YUC O08  O1  O 0 1 N N N N N N -22.576 -9.420  8.431  1.282  -2.135 -2.132 O08  YUC 32 
YUC O09  O2  O 0 1 N N N N N N -22.368 -8.347  10.353 -0.799 -2.211 -2.911 O09  YUC 33 
YUC O18  O3  O 0 1 N N N N N N -19.265 -13.463 2.236  7.266  0.928  -0.663 O18  YUC 34 
YUC O19  O4  O 0 1 N N N N N N -21.288 -12.771 3.192  8.542  -0.603 0.803  O19  YUC 35 
YUC O36  O5  O 0 1 N N N N N N -26.879 -12.070 13.513 -5.184 0.371  1.528  O36  YUC 36 
YUC O38  O6  O 0 1 N N N N N N -25.247 -10.600 12.756 -4.024 2.276  1.846  O38  YUC 37 
YUC S16  S1  S 0 1 N N N N N N -19.829 -12.745 3.378  7.352  0.110  0.496  S16  YUC 38 
YUC H121 H1  H 0 0 N N N N N N -22.503 -13.687 7.953  3.064  1.656  -1.536 H121 YUC 39 
YUC H131 H2  H 0 0 N N N N N N -21.530 -14.243 5.766  5.398  1.038  -1.105 H131 YUC 40 
YUC H013 H3  H 0 0 N N N N N N -23.171 -11.861 16.437 -4.159 4.060  0.278  H013 YUC 41 
YUC H011 H4  H 0 0 N N N N N N -22.913 -13.534 15.836 -3.577 4.555  -1.330 H011 YUC 42 
YUC H012 H5  H 0 0 N N N N N N -21.619 -12.302 15.649 -5.163 3.764  -1.162 H012 YUC 43 
YUC H021 H6  H 0 0 N N N N N N -23.056 -11.007 14.117 -3.463 2.176  -2.020 H021 YUC 44 
YUC H171 H7  H 0 0 N N N N N N -19.532 -10.474 4.248  5.770  1.427  1.745  H171 YUC 45 
YUC H172 H8  H 0 0 N N N N N N -18.025 -11.090 3.488  6.688  0.325  2.800  H172 YUC 46 
YUC H173 H9  H 0 0 N N N N N N -19.382 -10.519 2.459  7.449  1.815  2.193  H173 YUC 47 
YUC H231 H10 H 0 0 N N N N N N -19.285 -11.040 8.783  1.729  -1.793 0.634  H231 YUC 48 
YUC H251 H11 H 0 0 N N N N N N -20.996 -14.787 10.138 1.537  2.667  0.943  H251 YUC 49 
YUC H261 H12 H 0 0 N N N N N N -21.659 -15.976 12.200 -0.072 4.428  1.475  H261 YUC 50 
YUC H271 H13 H 0 0 N N N N N N -22.612 -14.777 14.123 -2.368 4.322  0.603  H271 YUC 51 
YUC H292 H14 H 0 0 N N N N N N -25.041 -14.295 14.265 -4.160 -0.407 -1.292 H292 YUC 52 
YUC H291 H15 H 0 0 N N N N N N -25.217 -13.480 15.856 -5.659 0.545  -1.531 H291 YUC 53 
YUC H311 H16 H 0 0 N N N N N N -27.393 -13.084 16.639 -5.037 -2.443 -0.426 H311 YUC 54 
YUC H312 H17 H 0 0 N N N N N N -28.036 -11.720 15.663 -4.481 -2.177 1.283  H312 YUC 55 
YUC H321 H18 H 0 0 N N N N N N -29.646 -13.120 14.616 -6.785 -2.005 2.101  H321 YUC 56 
YUC H331 H19 H 0 0 N N N N N N -28.623 -15.520 16.240 -7.494 -3.255 -0.610 H331 YUC 57 
YUC H332 H20 H 0 0 N N N N N N -29.667 -14.261 16.983 -6.788 -4.234 0.699  H332 YUC 58 
YUC H351 H21 H 0 0 N N N N N N -28.208 -13.991 12.965 -7.678 -0.145 0.777  H351 YUC 59 
YUC H352 H22 H 0 0 N N N N N N -27.557 -15.226 14.096 -7.314 -0.995 -0.787 H352 YUC 60 
YUC H051 H23 H 0 0 N N N N N N -22.911 -10.226 12.167 -2.081 0.038  -1.962 H051 YUC 61 
YUC H151 H24 H 0 0 N N N N N N -19.250 -14.472 4.733  6.480  -2.006 0.269  H151 YUC 62 
YUC H1   H25 H 0 1 N N N N N N -30.932 -16.043 16.053 -9.193 -4.290 0.742  H1   YUC 63 
YUC H341 H26 H 0 0 N N N N N N -31.236 -14.655 15.249 -8.637 -3.500 2.096  H341 YUC 64 
YUC H2   H28 H 0 1 N N N N N N -22.642 -7.634  9.788  -0.533 -3.040 -3.332 H2   YUC 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YUC O18 S16  DOUB N N 1  
YUC O19 S16  DOUB N N 2  
YUC S16 C17  SING N N 3  
YUC S16 N15  SING N N 4  
YUC N15 C14  SING N N 5  
YUC C14 C13  DOUB Y N 6  
YUC C14 C20  SING Y N 7  
YUC N22 C21  TRIP N N 8  
YUC C13 C12  SING Y N 9  
YUC C21 C20  SING N N 10 
YUC C20 C23  DOUB Y N 11 
YUC C12 C11  DOUB Y N 12 
YUC C23 C11  SING Y N 13 
YUC O08 C07  DOUB N N 14 
YUC C11 C10  SING N N 15 
YUC C07 C06  SING N N 16 
YUC C07 O09  SING N N 17 
YUC C10 C06  DOUB Y N 18 
YUC C10 C24  SING Y N 19 
YUC C06 N05  SING Y N 20 
YUC C24 C25  DOUB Y N 21 
YUC C24 C04  SING Y N 22 
YUC C25 C26  SING Y N 23 
YUC N05 C04  SING Y N 24 
YUC C04 C03  DOUB Y N 25 
YUC C26 C27  DOUB Y N 26 
YUC O38 C37  DOUB N N 27 
YUC C03 C27  SING Y N 28 
YUC C03 C02  SING N N 29 
YUC C37 O36  SING N N 30 
YUC C37 N28  SING N N 31 
YUC O36 C30  SING N N 32 
YUC C35 C30  SING N N 33 
YUC C35 C32  SING N N 34 
YUC N28 C02  SING N N 35 
YUC N28 C29  SING N N 36 
YUC C02 C01  SING N N 37 
YUC C30 C29  SING N N 38 
YUC C30 C31  SING N N 39 
YUC C32 C31  SING N N 40 
YUC C32 C33  SING N N 41 
YUC N34 C33  SING N N 42 
YUC C12 H121 SING N N 43 
YUC C13 H131 SING N N 44 
YUC C01 H013 SING N N 45 
YUC C01 H011 SING N N 46 
YUC C01 H012 SING N N 47 
YUC C02 H021 SING N N 48 
YUC C17 H171 SING N N 49 
YUC C17 H172 SING N N 50 
YUC C17 H173 SING N N 51 
YUC C23 H231 SING N N 52 
YUC C25 H251 SING N N 53 
YUC C26 H261 SING N N 54 
YUC C27 H271 SING N N 55 
YUC C29 H292 SING N N 56 
YUC C29 H291 SING N N 57 
YUC C31 H311 SING N N 58 
YUC C31 H312 SING N N 59 
YUC C32 H321 SING N N 60 
YUC C33 H331 SING N N 61 
YUC C33 H332 SING N N 62 
YUC C35 H351 SING N N 63 
YUC C35 H352 SING N N 64 
YUC N05 H051 SING N N 65 
YUC N15 H151 SING N N 66 
YUC N34 H1   SING N N 67 
YUC N34 H341 SING N N 68 
YUC O09 H2   SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YUC InChI            InChI                1.06  "InChI=1S/C26H27N5O6S/c1-14(31-13-26(37-25(31)34)9-15(10-26)11-27)18-4-3-5-19-21(23(24(32)33)29-22(18)19)16-6-7-20(17(8-16)12-28)30-38(2,35)36/h3-8,14-15,29-30H,9-11,13,27H2,1-2H3,(H,32,33)/t14-,15-,26-/m0/s1" 
YUC InChIKey         InChI                1.06  MGTBOPZXDJTSFZ-USBFQFRLSA-N                                                                                                                                                                                       
YUC SMILES_CANONICAL CACTVS               3.385 "C[C@H](N1C[C@@]2(C[C@H](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(c5)C#N"                                                                                                                        
YUC SMILES           CACTVS               3.385 "C[CH](N1C[C]2(C[CH](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(c5)C#N"                                                                                                                            
YUC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)C#N)NS(=O)(=O)C)C(=O)O)N4CC5(CC(C5)CN)OC4=O"                                                                                                                                 
YUC SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)C#N)NS(=O)(=O)C)C(=O)O)N4CC5(CC(C5)CN)OC4=O"                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           YUC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YUC "Create component" 2023-06-21 PDBE 
YUC "Initial release"  2024-07-10 RCSB 
# 
