data_Y6C
# 
_chem_comp.id                                    Y6C 
_chem_comp.name                                  "4-oxidanylidene-4-(1,10-phenanthrolin-5-ylamino)but-2-enoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H11 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-11 
_chem_comp.pdbx_modified_date                    2024-12-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        293.277 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y6C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XBJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y6C CAA  C1  C 0 1 N N N N N N 1.980  -10.974 22.157 -4.665 0.428  -0.541 CAA  Y6C 1  
Y6C CAC  C2  C 0 1 Y N N N N N -0.667 -7.963  15.902 2.944  -3.377 -0.103 CAC  Y6C 2  
Y6C CAD  C3  C 0 1 Y N N N N N -2.722 -14.244 18.099 2.069  3.489  0.350  CAD  Y6C 3  
Y6C CAE  C4  C 0 1 Y N N N N N -1.123 -8.976  15.036 3.955  -2.534 0.345  CAE  Y6C 4  
Y6C CAF  C5  C 0 1 Y N N N N N -2.713 -13.862 16.743 3.269  2.878  0.694  CAF  Y6C 5  
Y6C CAG  C6  C 0 1 Y N N N N N -0.642 -8.224  17.240 1.735  -2.854 -0.472 CAG  Y6C 6  
Y6C CAH  C7  C 0 1 Y N N N N N -2.305 -13.347 19.030 1.017  2.727  -0.084 CAH  Y6C 7  
Y6C CAI  C8  C 0 1 Y N N N N N -1.040 -9.820  19.096 0.325  -0.874 -0.746 CAI  Y6C 8  
Y6C CAM  C9  C 0 1 N N N N N N 2.919  -12.114 22.524 -4.597 -0.364 0.701  CAM  Y6C 9  
Y6C CAN  C10 C 0 1 Y N N N N N -1.464 -11.037 19.522 0.130  0.467  -0.662 CAN  Y6C 10 
Y6C CAO  C11 C 0 1 Y N N N N N -1.048 -9.485  17.721 1.553  -1.462 -0.378 CAO  Y6C 11 
Y6C CAP  C12 C 0 1 Y N N N N N -1.880 -12.056 18.610 1.198  1.340  -0.178 CAP  Y6C 12 
Y6C CAQ  C13 C 0 1 Y N N N N N -1.484 -10.447 16.778 2.623  -0.667 0.091  CAQ  Y6C 13 
Y6C CAR  C14 C 0 1 Y N N N N N -1.917 -11.757 17.234 2.444  0.786  0.187  CAR  Y6C 14 
Y6C NAJ  N1  N 0 1 Y N N N N N -1.513 -10.185 15.438 3.780  -1.235 0.425  NAJ  Y6C 15 
Y6C NAK  N2  N 0 1 Y N N N N N -2.326 -12.667 16.314 3.427  1.577  0.608  NAK  Y6C 16 
Y6C NAL  N3  N 0 1 N N N N N N -1.366 -11.405 20.874 -1.100 1.013  -1.023 NAL  Y6C 17 
Y6C OAB  O1  O 0 1 N N N N N N 4.093  -12.091 22.101 -3.554 -0.437 1.318  OAB  Y6C 18 
Y6C OAM  O2  O 0 1 N N N N N N 2.488  -12.996 23.268 -5.693 -1.007 1.150  OAM  Y6C 19 
Y6C CAS  C15 C 0 0 N N N N N N -0.208 -11.920 21.335 -2.237 0.330  -0.782 CAA1 Y6C 20 
Y6C CAT  C16 C 0 0 N N N N N N 0.641  -10.960 22.064 -3.545 0.951  -1.067 CAAB Y6C 21 
Y6C OAS  O3  O 0 0 N N N N N N 0.202  -13.057 21.073 -2.185 -0.797 -0.329 OAA2 Y6C 22 
Y6C HAA  H1  H 0 1 N N N N N N 2.464  -10.034 21.938 -5.615 0.585  -1.031 HAA  Y6C 23 
Y6C HAC  H2  H 0 1 N N N N N N -0.346 -7.006  15.517 3.115  -4.441 -0.164 HAC  Y6C 24 
Y6C HAD  H3  H 0 1 N N N N N N -3.053 -15.229 18.392 1.964  4.561  0.430  HAD  Y6C 25 
Y6C HAE  H4  H 0 1 N N N N N N -1.159 -8.759  13.979 4.906  -2.957 0.633  HAE  Y6C 26 
Y6C HAF  H5  H 0 1 N N N N N N -3.040 -14.584 16.009 4.090  3.488  1.039  HAF  Y6C 27 
Y6C HAG  H6  H 0 1 N N N N N N -0.311 -7.464  17.932 0.941  -3.493 -0.826 HAG  Y6C 28 
Y6C HAH  H7  H 0 1 N N N N N N -2.296 -13.611 20.077 0.076  3.184  -0.356 HAH  Y6C 29 
Y6C HAI  H8  H 0 1 N N N N N N -0.691 -9.096  19.818 -0.477 -1.504 -1.101 HAI  Y6C 30 
Y6C HNAL H9  H 0 0 N N N N N N -2.146 -11.286 21.488 -1.139 1.884  -1.449 HNAL Y6C 31 
Y6C H1   H10 H 0 1 N N N N N N 3.179  -13.622 23.450 -5.599 -1.514 1.969  H1   Y6C 32 
Y6C HAAB H11 H 0 0 N N N N N N 0.131  -10.159 22.579 -3.602 1.825  -1.699 HAAB Y6C 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y6C CAA CAM  SING N N 1  
Y6C CAA CAT  DOUB N Z 2  
Y6C CAM OAB  DOUB N N 3  
Y6C CAM OAM  SING N N 4  
Y6C NAL CAN  SING N N 5  
Y6C NAL CAS  SING N N 6  
Y6C CAN CAP  DOUB Y N 7  
Y6C CAN CAI  SING Y N 8  
Y6C CAP CAH  SING Y N 9  
Y6C CAP CAR  SING Y N 10 
Y6C CAH CAD  DOUB Y N 11 
Y6C CAD CAF  SING Y N 12 
Y6C CAF NAK  DOUB Y N 13 
Y6C NAK CAR  SING Y N 14 
Y6C CAR CAQ  DOUB Y N 15 
Y6C CAQ NAJ  SING Y N 16 
Y6C CAQ CAO  SING Y N 17 
Y6C NAJ CAE  DOUB Y N 18 
Y6C CAE CAC  SING Y N 19 
Y6C CAC CAG  DOUB Y N 20 
Y6C CAG CAO  SING Y N 21 
Y6C CAO CAI  DOUB Y N 22 
Y6C CAT CAS  SING N N 23 
Y6C CAS OAS  DOUB N N 24 
Y6C CAA HAA  SING N N 25 
Y6C CAC HAC  SING N N 26 
Y6C CAD HAD  SING N N 27 
Y6C CAE HAE  SING N N 28 
Y6C CAF HAF  SING N N 29 
Y6C CAG HAG  SING N N 30 
Y6C CAH HAH  SING N N 31 
Y6C CAI HAI  SING N N 32 
Y6C NAL HNAL SING N N 33 
Y6C OAM H1   SING N N 34 
Y6C CAT HAAB SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y6C InChI            InChI                1.06  "InChI=1S/C16H11N3O3/c20-13(5-6-14(21)22)19-12-9-10-3-1-7-17-15(10)16-11(12)4-2-8-18-16/h1-9H,(H,19,20)(H,21,22)/b6-5-" 
Y6C InChIKey         InChI                1.06  TVPGTODVJPAAAB-WAYWQWQTSA-N                                                                                             
Y6C SMILES_CANONICAL CACTVS               3.385 "OC(=O)\C=C/C(=O)Nc1cc2cccnc2c3ncccc13"                                                                                 
Y6C SMILES           CACTVS               3.385 "OC(=O)C=CC(=O)Nc1cc2cccnc2c3ncccc13"                                                                                   
Y6C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c3cccnc3c2nc1)NC(=O)C=CC(=O)O"                                                                                 
Y6C SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c3cccnc3c2nc1)NC(=O)C=CC(=O)O"                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           Y6C 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-oxidanylidene-4-(1,10-phenanthrolin-5-ylamino)but-2-enoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y6C "Create component" 2023-12-11 PDBC 
Y6C "Modify atom id"   2023-12-13 PDBC 
Y6C "Modify PCM"       2024-09-27 PDBE 
Y6C "Initial release"  2024-12-11 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y6C 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAT 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
