data_SKC
# 
_chem_comp.id                                    SKC 
_chem_comp.name                                  "(2E,4aR,7aS)-6-[3-(4-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H20 Cl F2 N5 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-28 
_chem_comp.pdbx_modified_date                    2024-08-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.898 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SKC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TYG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SKC N1   N1  N  0 1 Y N N N N N 37.892 30.501 22.837 -0.602 2.854  0.989  N1   SKC 1  
SKC C7   C1  C  0 1 Y N N N N N 40.043 25.308 20.408 -5.403 -0.219 -0.846 C7   SKC 2  
SKC C8   C2  C  0 1 Y N N N N N 41.146 25.092 21.202 -5.121 -1.480 -0.349 C8   SKC 3  
SKC N2   N2  N  0 1 N N N N N N 35.821 27.241 24.904 2.376  1.267  0.542  N2   SKC 4  
SKC C9   C3  C  0 1 Y N N N N N 41.513 26.002 22.170 -4.067 -1.663 0.530  C9   SKC 5  
SKC C6   C4  C  0 1 Y N N N N N 39.310 26.469 20.569 -4.631 0.862  -0.472 C6   SKC 6  
SKC N3   N3  N  0 1 N N N N N N 35.400 28.409 26.922 3.297  1.475  -1.625 N3   SKC 7  
SKC N4   N4  N  0 1 N N N N N N 33.711 28.186 25.423 4.571  2.018  0.237  N4   SKC 8  
SKC C10  C5  C  0 1 Y N N N N N 40.778 27.164 22.319 -3.292 -0.588 0.914  C10  SKC 9  
SKC C11  C6  C  0 1 Y N N N N N 39.672 27.430 21.512 -3.565 0.682  0.409  C11  SKC 10 
SKC C12  C7  C  0 1 Y N N N N N 38.960 28.733 21.586 -2.732 1.840  0.814  C12  SKC 11 
SKC C13  C8  C  0 1 Y N N N N N 38.881 29.516 20.432 -3.317 2.967  1.390  C13  SKC 12 
SKC C14  C9  C  0 1 Y N N N N N 38.316 30.777 20.498 -2.495 4.023  1.753  C14  SKC 13 
SKC C15  C10 C  0 1 Y N N N N N 37.849 31.226 21.709 -1.134 3.931  1.536  C15  SKC 14 
SKC C16  C11 C  0 1 Y N N N N N 38.438 24.963 26.340 1.800  -2.428 0.216  C16  SKC 15 
SKC C17  C12 C  0 1 Y N N N N N 38.517 23.747 26.969 2.507  -3.588 0.482  C17  SKC 16 
SKC C18  C13 C  0 1 Y N N N N N 37.351 23.046 27.219 3.784  -3.514 1.005  C18  SKC 17 
SKC C19  C14 C  0 1 Y N N N N N 36.167 23.602 26.814 4.356  -2.281 1.263  C19  SKC 18 
SKC C20  C15 C  0 1 Y N N N N N 36.073 24.813 26.166 3.649  -1.120 0.996  C20  SKC 19 
SKC C21  C16 C  0 1 Y N N N N N 38.411 29.266 22.783 -1.343 1.820  0.626  C21  SKC 20 
SKC C22  C17 C  0 1 Y N N N N N 37.240 25.530 25.921 2.372  -1.194 0.474  C22  SKC 21 
SKC C23  C18 C  0 1 N N S N N N 37.192 26.904 25.268 1.603  0.069  0.184  C23  SKC 22 
SKC C24  C19 C  0 1 N N R N N N 37.716 28.033 26.197 1.194  0.160  -1.301 C24  SKC 23 
SKC C25  C20 C  0 1 N N N N N N 36.735 28.481 27.255 2.262  0.793  -2.132 C25  SKC 24 
SKC C26  C21 C  0 1 N N N N N N 34.965 27.937 25.699 3.443  1.609  -0.268 C26  SKC 25 
SKC C27  C22 C  0 1 N N N N N N 34.428 28.873 27.908 4.261  2.114  -2.526 C27  SKC 26 
SKC C28  C23 C  0 1 N N N N N N 38.064 27.050 24.015 0.264  0.111  0.952  C28  SKC 27 
SKC C29  C24 C  0 1 N N N N N N 38.044 29.170 25.218 -0.053 1.071  -1.250 C29  SKC 28 
SKC F32  F1  F  0 1 N N N N N N 39.586 25.648 26.138 0.553  -2.500 -0.301 F32  SKC 29 
SKC F33  F2  F  0 1 N N N N N N 35.017 22.936 27.088 5.604  -2.209 1.775  F33  SKC 30 
SKC N5   N5  N  0 1 N N N N N N 38.250 28.502 23.934 -0.741 0.707  0.054  N5   SKC 31 
SKC O30  O1  O  0 1 N N N N N N 37.107 28.897 28.337 2.196  0.669  -3.336 O30  SKC 32 
SKC CL31 CL1 CL 0 0 N N N N N N 42.106 23.658 20.962 -6.093 -2.836 -0.828 CL31 SKC 33 
SKC HC7  H1  H  0 1 N N N N N N 39.753 24.578 19.667 -6.227 -0.081 -1.531 HC7  SKC 34 
SKC HN2  H2  H  0 1 N N N N N N 35.488 26.940 24.010 2.143  1.801  1.317  HN2  SKC 35 
SKC HC9  H3  H  0 1 N N N N N N 42.365 25.810 22.805 -3.851 -2.648 0.915  HC9  SKC 36 
SKC HC6  H4  H  0 1 N N N N N N 38.439 26.635 19.952 -4.852 1.845  -0.860 HC6  SKC 37 
SKC HN4  H5  H  0 1 N N N N N N 33.258 28.690 26.159 5.299  2.276  -0.350 HN4  SKC 38 
SKC HC10 H6  H  0 0 N N N N N N 41.066 27.879 23.075 -2.470 -0.731 1.600  HC10 SKC 39 
SKC HC13 H7  H  0 0 N N N N N N 39.259 29.139 19.493 -4.384 3.016  1.550  HC13 SKC 40 
SKC HC14 H8  H  0 0 N N N N N N 38.244 31.396 19.616 -2.916 4.911  2.201  HC14 SKC 41 
SKC HC15 H9  H  0 0 N N N N N N 37.424 32.218 21.756 -0.495 4.754  1.818  HC15 SKC 42 
SKC HC17 H10 H  0 0 N N N N N N 39.474 23.343 27.264 2.060  -4.551 0.281  HC17 SKC 43 
SKC HC18 H11 H  0 0 N N N N N N 37.374 22.089 27.719 4.335  -4.420 1.213  HC18 SKC 44 
SKC HC20 H12 H  0 0 N N N N N N 35.113 25.198 25.854 4.095  -0.158 1.198  HC20 SKC 45 
SKC HC24 H13 H  0 0 N N N N N N 38.645 27.694 26.679 0.946  -0.828 -1.690 HC24 SKC 46 
SKC H27A H14 H  0 0 N N N N N N 34.955 29.209 28.813 5.119  1.456  -2.664 H27A SKC 47 
SKC H27B H15 H  0 0 N N N N N N 33.851 29.710 27.488 3.788  2.301  -3.490 H27B SKC 48 
SKC H27C H16 H  0 0 N N N N N N 33.746 28.050 28.166 4.592  3.058  -2.093 H27C SKC 49 
SKC H28A H17 H  0 0 N N N N N N 39.026 26.531 24.136 -0.037 -0.900 1.225  H28A SKC 50 
SKC H28B H18 H  0 0 N N N N N N 37.549 26.664 23.123 0.371  0.720  1.849  H28B SKC 51 
SKC H29B H19 H  0 0 N N N N N N 38.955 29.701 25.530 0.245  2.119  -1.238 H29B SKC 52 
SKC H29A H20 H  0 0 N N N N N N 37.208 29.882 25.156 -0.702 0.872  -2.103 H29A SKC 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SKC N1  C21  DOUB Y N 1  
SKC N2  C23  SING N N 2  
SKC N2  C26  SING N N 3  
SKC N3  C26  SING N N 4  
SKC N3  C27  SING N N 5  
SKC N5  C29  SING N N 6  
SKC C6  C7   DOUB Y N 7  
SKC C6  C11  SING Y N 8  
SKC C7  C8   SING Y N 9  
SKC C8  C9   DOUB Y N 10 
SKC C9  C10  SING Y N 11 
SKC C10 C11  DOUB Y N 12 
SKC C11 C12  SING N N 13 
SKC C12 C13  DOUB Y N 14 
SKC C12 C21  SING Y N 15 
SKC C13 C14  SING Y N 16 
SKC C14 C15  DOUB Y N 17 
SKC N1  C15  SING Y N 18 
SKC C16 C17  DOUB Y N 19 
SKC C16 C22  SING Y N 20 
SKC C17 C18  SING Y N 21 
SKC C18 C19  DOUB Y N 22 
SKC C19 C20  SING Y N 23 
SKC C20 C22  DOUB Y N 24 
SKC N5  C21  SING N N 25 
SKC C22 C23  SING N N 26 
SKC C23 C24  SING N N 27 
SKC C23 C28  SING N N 28 
SKC C24 C25  SING N N 29 
SKC C24 C29  SING N N 30 
SKC N3  C25  SING N N 31 
SKC C25 O30  DOUB N N 32 
SKC N4  C26  DOUB N N 33 
SKC N5  C28  SING N N 34 
SKC C8  CL31 SING N N 35 
SKC C16 F32  SING N N 36 
SKC C19 F33  SING N N 37 
SKC C7  HC7  SING N N 38 
SKC N2  HN2  SING N N 39 
SKC C9  HC9  SING N N 40 
SKC C6  HC6  SING N N 41 
SKC N4  HN4  SING N N 42 
SKC C10 HC10 SING N N 43 
SKC C13 HC13 SING N N 44 
SKC C14 HC14 SING N N 45 
SKC C15 HC15 SING N N 46 
SKC C17 HC17 SING N N 47 
SKC C18 HC18 SING N N 48 
SKC C20 HC20 SING N N 49 
SKC C24 HC24 SING N N 50 
SKC C27 H27A SING N N 51 
SKC C27 H27B SING N N 52 
SKC C27 H27C SING N N 53 
SKC C28 H28A SING N N 54 
SKC C28 H28B SING N N 55 
SKC C29 H29B SING N N 56 
SKC C29 H29A SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SKC SMILES           ACDLabs              12.01 "Clc1ccc(cc1)c1cccnc1N1CC2(NC(=N)N(C)C(=O)C2C1)c1cc(F)ccc1F"                                                                                                                       
SKC InChI            InChI                1.06  "InChI=1S/C24H20ClF2N5O/c1-31-22(33)19-12-32(21-17(3-2-10-29-21)14-4-6-15(25)7-5-14)13-24(19,30-23(31)28)18-11-16(26)8-9-20(18)27/h2-11,19H,12-13H2,1H3,(H2,28,30)/t19-,24+/m0/s1" 
SKC InChIKey         InChI                1.06  JZQJSLYBFWXABF-YADARESESA-N                                                                                                                                                        
SKC SMILES_CANONICAL CACTVS               3.385 "CN1C(=N)N[C@]2(CN(C[C@H]2C1=O)c3ncccc3c4ccc(Cl)cc4)c5cc(F)ccc5F"                                                                                                                  
SKC SMILES           CACTVS               3.385 "CN1C(=N)N[C]2(CN(C[CH]2C1=O)c3ncccc3c4ccc(Cl)cc4)c5cc(F)ccc5F"                                                                                                                    
SKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/1\N[C@]2(CN(C[C@H]2C(=O)N1C)c3c(cccn3)c4ccc(cc4)Cl)c5cc(ccc5F)F"                                                                                                          
SKC SMILES           "OpenEye OEToolkits" 2.0.7 "CN1C(=O)C2CN(CC2(NC1=N)c3cc(ccc3F)F)c4c(cccn4)c5ccc(cc5)Cl"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SKC "SYSTEMATIC NAME" ACDLabs              12.01 "(2E,4aR,7aS)-6-[3-(4-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one"                                   
SKC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{a}~{R},7~{a}~{S})-2-azanylidene-7~{a}-[2,5-bis(fluoranyl)phenyl]-6-[3-(4-chlorophenyl)pyridin-2-yl]-3-methyl-1,4~{a},5,7-tetrahydropyrrolo[3,4-d]pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SKC "Create component" 2023-08-28 RCSB 
SKC "Initial release"  2024-08-28 RCSB 
# 
