data_M4C
# 
_chem_comp.id                                    M4C 
_chem_comp.name                                  
;N-methyl-2'-O-methylcytidine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H18 N3 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               C 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-01-18 
_chem_comp.pdbx_modified_date                    2012-05-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      4OC 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        351.250 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M4C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M4C P1     P1     P 0 1 N N N -0.140 -0.164 -0.022 4.317  -1.226 0.026  P1     M4C 1  
M4C N1     N1     N 0 1 N N N 5.675  -1.160 -2.817 -2.082 0.169  -0.657 N1     M4C 2  
M4C C1     C1     C 0 1 N N N 7.013  -1.427 -2.999 -2.050 -0.742 0.334  C1     M4C 3  
M4C O1     O1     O 0 1 N N N 7.923  -0.693 -2.548 -1.079 -0.792 1.071  O1     M4C 4  
M4C C2     C2     C 0 1 N N N 6.118  2.957  -4.153 -2.143 3.729  1.464  C2     M4C 5  
M4C N2     N2     N 0 1 N N N 7.417  -2.524 -3.692 -3.060 -1.588 0.522  N2     M4C 6  
M4C C3     C3     C 0 1 N N N 6.538  -3.392 -4.252 -4.128 -1.555 -0.265 C3     M4C 7  
M4C N3     N3     N 0 1 N N N 6.995  -4.513 -4.970 -5.166 -2.434 -0.060 N3     M4C 8  
M4C C4     C4     C 0 1 N N N 5.163  -3.131 -4.134 -4.192 -0.613 -1.312 C4     M4C 9  
M4C C5     C5     C 0 1 N N N 4.760  -1.994 -3.414 -3.157 0.241  -1.491 C5     M4C 10 
M4C C6     C6     C 0 1 N N R 5.227  -0.028 -2.020 -0.958 1.091  -0.835 C6     M4C 11 
M4C C7     C7     C 0 1 N N N 7.198  -5.714 -4.135 -5.095 -3.411 1.030  C7     M4C 12 
M4C C8     C8     C 0 1 N N R 4.980  1.239  -2.864 -0.830 2.038  0.385  C8     M4C 13 
M4C O2     O2     O 0 1 N N N 6.228  1.888  -3.196 -1.668 3.185  0.230  O2     M4C 14 
M4C C9     C9     C 0 1 N N R 4.055  2.066  -1.949 0.666  2.435  0.332  C9     M4C 15 
M4C O3     O3     O 0 1 N N N 4.791  3.037  -1.204 0.825  3.702  -0.310 O3     M4C 16 
M4C C10    C10    C 0 1 N N R 3.411  1.015  -1.003 1.323  1.320  -0.505 C10    M4C 17 
M4C O4     O4     O 0 1 N N N 3.973  -0.259 -1.352 0.294  0.372  -0.837 O4     M4C 18 
M4C C11    C11    C 0 1 N N N 1.865  0.967  -1.103 2.419  0.634  0.312  C11    M4C 19 
M4C O5     O5     O 0 1 N N N 1.345  0.096  -0.228 3.100  -0.317 -0.509 O5     M4C 20 
M4C O6     O6     O 0 1 N N N -0.816 1.078  0.406  5.371  -0.355 0.591  O6     M4C 21 
M4C O7     O7     O 0 1 N N N -0.742 -0.655 -1.319 3.778  -2.226 1.166  O7     M4C 22 
M4C HN4    HN4    H 0 1 N N N 7.166  -4.498 -5.955 -5.945 -2.408 -0.637 HN4    M4C 23 
M4C H5     H5     H 0 1 N N N 4.434  -3.788 -4.585 -5.054 -0.574 -1.962 H5     M4C 24 
M4C H6     H6     H 0 1 N N N 3.707  -1.770 -3.328 -3.183 0.972  -2.286 H6     M4C 25 
M4C "H1'"  "H1'"  H 0 1 N N N 5.997  0.210  -1.271 -1.076 1.664  -1.755 "H1'"  M4C 26 
M4C H10    H10    H 0 1 N N N 7.554  -6.543 -4.764 -4.228 -4.056 0.883  H10    M4C 27 
M4C H10A   H10A   H 0 0 N N N 7.945  -5.498 -3.357 -5.001 -2.888 1.981  H10A   M4C 28 
M4C H10B   H10B   H 0 0 N N N 6.246  -5.996 -3.661 -6.001 -4.016 1.035  H10B   M4C 29 
M4C "H2'"  "H2'"  H 0 1 N N N 4.433  0.964  -3.778 -1.061 1.512  1.311  "H2'"  M4C 30 
M4C "H3'"  "H3'"  H 0 1 N N N 3.269  2.542  -2.554 1.089  2.461  1.336  "H3'"  M4C 31 
M4C "HO3'" "HO3'" H 0 0 N Y N 4.196  3.530  -0.651 1.743  4.000  -0.370 "HO3'" M4C 32 
M4C "H4'"  "H4'"  H 0 1 N N N 3.682  1.271  0.032  1.746  1.742  -1.417 "H4'"  M4C 33 
M4C "H5'"  "H5'"  H 0 1 N N N 1.462  1.969  -0.893 3.129  1.381  0.667  "H5'"  M4C 34 
M4C "H5'A" "H5'A" H 0 0 N N N 1.582  0.663  -2.122 1.972  0.123  1.164  "H5'A" M4C 35 
M4C O8     O8     O 0 1 N Y N -0.318 -1.230 1.034  4.925  -2.081 -1.195 O8     M4C 36 
M4C H14    H14    H 0 1 N N N 7.113  3.386  -4.340 -1.295 4.030  2.079  H14    M4C 37 
M4C H15    H15    H 0 1 N N N 5.705  2.565  -5.094 -2.771 4.596  1.260  H15    M4C 38 
M4C H16    H16    H 0 1 N N N 5.451  3.737  -3.756 -2.725 2.974  1.992  H16    M4C 39 
M4C H17    H17    H 0 1 N N N -1.433 -0.063 -1.592 3.083  -2.828 0.865  H17    M4C 40 
M4C H18    H18    H 0 1 N N N -0.828 -0.880 1.755  5.664  -2.653 -0.945 H18    M4C 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M4C P1  O5     SING N N 1  
M4C P1  O6     DOUB N N 2  
M4C P1  O7     SING N N 3  
M4C N1  C1     SING N N 4  
M4C N1  C5     SING N N 5  
M4C N1  C6     SING N N 6  
M4C C1  O1     DOUB N N 7  
M4C C1  N2     SING N N 8  
M4C C2  O2     SING N N 9  
M4C N2  C3     DOUB N N 10 
M4C C3  N3     SING N N 11 
M4C C3  C4     SING N N 12 
M4C N3  C7     SING N N 13 
M4C N3  HN4    SING N N 14 
M4C C4  C5     DOUB N N 15 
M4C C4  H5     SING N N 16 
M4C C5  H6     SING N N 17 
M4C C6  C8     SING N N 18 
M4C C6  O4     SING N N 19 
M4C C6  "H1'"  SING N N 20 
M4C C7  H10    SING N N 21 
M4C C7  H10A   SING N N 22 
M4C C7  H10B   SING N N 23 
M4C C8  O2     SING N N 24 
M4C C8  C9     SING N N 25 
M4C C8  "H2'"  SING N N 26 
M4C C9  O3     SING N N 27 
M4C C9  C10    SING N N 28 
M4C C9  "H3'"  SING N N 29 
M4C O3  "HO3'" SING N N 30 
M4C C10 O4     SING N N 31 
M4C C10 C11    SING N N 32 
M4C C10 "H4'"  SING N N 33 
M4C C11 O5     SING N N 34 
M4C C11 "H5'"  SING N N 35 
M4C C11 "H5'A" SING N N 36 
M4C P1  O8     SING N N 37 
M4C C2  H14    SING N N 38 
M4C C2  H15    SING N N 39 
M4C C2  H16    SING N N 40 
M4C O7  H17    SING N N 41 
M4C O8  H18    SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M4C SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)N=C(NC)C=C1)C(OC)C2O"                                                                                                                    
M4C InChI            InChI                1.03  "InChI=1S/C11H18N3O8P/c1-12-7-3-4-14(11(16)13-7)10-9(20-2)8(15)6(22-10)5-21-23(17,18)19/h3-4,6,8-10,15H,5H2,1-2H3,(H,12,13,16)(H2,17,18,19)/t6-,8-,9-,10-/m1/s1" 
M4C InChIKey         InChI                1.03  GPJNLASIBKTFTM-PEBGCTIMSA-N                                                                                                                                      
M4C SMILES_CANONICAL CACTVS               3.370 "CNC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OC"                                                                                                
M4C SMILES           CACTVS               3.370 "CNC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OC"                                                                                                      
M4C SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CNC1=NC(=O)N(C=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OC"                                                                                                
M4C SMILES           "OpenEye OEToolkits" 1.7.6 "CNC1=NC(=O)N(C=C1)C2C(C(C(O2)COP(=O)(O)O)O)OC"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
M4C "SYSTEMATIC NAME" ACDLabs              12.01 
;N-methyl-2'-O-methylcytidine 5'-(dihydrogen phosphate)
;
M4C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4R,5R)-4-methoxy-5-[4-(methylamino)-2-oxidanylidene-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M4C "Create component"         2011-01-18 RCSB 
M4C "Modify descriptor"        2011-06-04 RCSB 
M4C "Modify leaving atom flag" 2011-12-14 RCSB 
M4C "Obsolete component"       2012-05-30 RCSB 
# 
