data_J4C
#

_chem_comp.id                                   J4C
_chem_comp.name                                 "(2S)-2-[[4-[[1-[(3,4-dichlorophenyl)methyl]-3,7-dimethyl-2,6-bis(oxidanylidene)purin-8-yl]amino]phenyl]carbonylamino]pentanedioic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H24 Cl2 N6 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(4-((1-(3,4-dichlorobenzyl)-3,7-dimethyl-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-8-yl)amino)benzoyl)-L-glutamic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-05
_chem_comp.pdbx_modified_date                   2021-08-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       603.411
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J4C
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EHM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J4C  C2   C1   C   0  1  N  N  N  12.289  -55.606  -3.292    3.748  -0.959   2.055  C2   J4C   1  
J4C  C5   C2   C   0  1  Y  N  N  11.976  -57.570  -1.496    2.478   1.225   1.019  C5   J4C   2  
J4C  C6   C3   C   0  1  N  N  N  13.205  -57.120  -1.795    3.857   1.255   1.292  C6   J4C   3  
J4C  N    N1   N   0  1  N  N  N   3.384  -59.837  -1.234   -6.655  -0.554  -0.363  N    J4C   4  
J4C  CA   C4   C   0  1  N  N  S   1.953  -59.777  -1.594   -7.915  -1.291  -0.235  CA   J4C   5  
J4C  C    C5   C   0  1  N  N  N   1.407  -61.082  -2.202   -7.779  -2.638  -0.897  C    J4C   6  
J4C  O    O1   O   0  1  N  N  N   0.675  -61.782  -1.466   -8.816  -3.490  -0.904  O    J4C   7  
J4C  CB   C6   C   0  1  N  N  N   1.776  -58.631  -2.602   -9.038  -0.502  -0.911  CB   J4C   8  
J4C  CG   C7   C   0  1  N  N  N   3.039  -58.648  -3.507   -9.260   0.813  -0.161  CG   J4C   9  
J4C  CD   C8   C   0  1  N  N  N   3.180  -57.355  -4.327  -10.366   1.591  -0.826  CD   J4C  10  
J4C  OE1  O2   O   0  1  N  N  N   2.857  -57.422  -5.526  -10.920   1.140  -1.801  OE1  J4C  11  
J4C  OE2  O3   O   0  1  N  N  N   3.622  -56.335  -3.739  -10.736   2.785  -0.336  OE2  J4C  12  
J4C  OXT  O4   O   0  1  N  N  N   1.700  -61.331  -3.402   -6.737  -2.950  -1.422  OXT  J4C  13  
J4C  C4   C9   C   0  1  Y  N  N  10.903  -57.049  -2.096    1.758   0.064   1.282  C4   J4C  14  
J4C  C8   C10  C   0  1  Y  N  N  10.216  -58.575  -0.742    0.360   1.519   0.480  C8   J4C  15  
J4C  CAA  C11  C   0  1  N  N  N  14.733  -55.693  -2.998    5.889   0.183   2.090  CAA  J4C  16  
J4C  CAH  C12  C   0  1  N  N  N   9.888  -55.472  -3.671    1.693  -2.266   2.095  CAH  J4C  17  
J4C  CAN  C13  C   0  1  N  N  N  12.264  -59.426   0.245    1.856   3.512   0.081  CAN  J4C  18  
J4C  CAP  C14  C   0  1  Y  N  N   8.161  -59.606  -0.044   -2.014   1.384   0.160  CAP  J4C  19  
J4C  CAQ  C15  C   0  1  Y  N  N   7.502  -60.078   1.095   -2.188   0.483   1.207  CAQ  J4C  20  
J4C  CAR  C16  C   0  1  Y  N  N   6.113  -60.284   1.087   -3.371  -0.210   1.330  CAR  J4C  21  
J4C  CAS  C17  C   0  1  Y  N  N   5.355  -60.050  -0.065   -4.398  -0.008   0.403  CAS  J4C  22  
J4C  CAT  C18  C   0  1  Y  N  N   6.018  -59.576  -1.199   -4.219   0.897  -0.647  CAT  J4C  23  
J4C  CAU  C19  C   0  1  Y  N  N   7.401  -59.368  -1.192   -3.036   1.592  -0.761  CAU  J4C  24  
J4C  CAV  C20  C   0  1  Y  N  N  15.078  -54.275  -2.537    6.652  -0.274   0.873  CAV  J4C  25  
J4C  CAW  C21  C   0  1  Y  N  N  15.735  -53.424  -3.421    6.940  -1.616   0.702  CAW  J4C  26  
J4C  CAX  C22  C   0  1  Y  N  N  16.072  -52.131  -3.055    7.640  -2.037  -0.412  CAX  J4C  27  
J4C  CAY  C23  C   0  1  Y  N  N  15.740  -51.703  -1.780    8.053  -1.116  -1.358  CAY  J4C  28  
J4C  CAZ  C24  C   0  1  Y  N  N  15.094  -52.555  -0.897    7.764   0.228  -1.188  CAZ  J4C  29  
J4C  CBA  C25  C   0  1  Y  N  N  14.749  -53.848  -1.258    7.059   0.647  -0.074  CBA  J4C  30  
J4C  CBD  C26  C   0  1  N  N  N   3.950  -60.224  -0.079   -5.666  -0.750   0.531  CBD  J4C  31  
J4C  N1   N2   N   0  1  N  N  N  13.357  -56.139  -2.677    4.453   0.157   1.803  N1   J4C  32  
J4C  N3   N3   N   0  1  N  N  N  11.061  -56.065  -2.990    2.426  -1.030   1.808  N3   J4C  33  
J4C  N7   N4   N   0  1  Y  N  N  11.540  -58.518  -0.661    1.569   2.141   0.508  N7   J4C  34  
J4C  N9   N5   N   0  1  Y  N  N   9.808  -57.658  -1.620    0.489   0.291   0.941  N9   J4C  35  
J4C  NAO  N6   N   0  1  N  N  N   9.508  -59.440   0.022   -0.816   2.084   0.039  NAO  J4C  36  
J4C  O2   O5   O   0  1  N  N  N  12.437  -54.707  -4.128    4.319  -1.931   2.511  O2   J4C  37  
J4C  O6   O6   O   0  1  N  N  N  14.230  -57.575  -1.274    4.508   2.261   1.069  O6   J4C  38  
J4C  OBE  O7   O   0  1  N  N  N   3.320  -60.619   0.911   -5.820  -1.538   1.445  OBE  J4C  39  
J4C  CL1  CL1  CL  0  0  N  N  N  16.130  -50.116  -1.237    8.933  -1.644  -2.759  CL1  J4C  40  
J4C  CL2  CL2  CL  0  0  N  N  N  14.714  -51.974   0.637    8.282   1.385  -2.374  CL2  J4C  41  
J4C  H1   H1   H   0  1  N  N  N   4.020  -59.549  -1.950   -6.533   0.074  -1.092  H1   J4C  42  
J4C  H2   H2   H   0  1  N  N  N   1.365  -59.542  -0.695   -8.151  -1.427   0.820  H2   J4C  43  
J4C  H3   H3   H   0  1  N  N  N   0.368  -62.539  -1.951   -8.681  -4.342  -1.341  H3   J4C  44  
J4C  H4   H4   H   0  1  N  N  N   1.698  -57.669  -2.075   -8.762  -0.289  -1.944  H4   J4C  45  
J4C  H5   H5   H   0  1  N  N  N   0.872  -58.792  -3.207   -9.956  -1.089  -0.894  H5   J4C  46  
J4C  H6   H6   H   0  1  N  N  N   2.969  -59.501  -4.198   -9.536   0.600   0.872  H6   J4C  47  
J4C  H7   H7   H   0  1  N  N  N   3.929  -58.764  -2.871   -8.342   1.401  -0.178  H7   J4C  48  
J4C  H8   H8   H   0  1  N  N  N   3.674  -55.612  -4.353  -11.450   3.246  -0.797  H8   J4C  49  
J4C  H9   H9   H   0  1  N  N  N  15.438  -56.388  -2.519    6.105  -0.482   2.926  H9   J4C  50  
J4C  H10  H10  H   0  1  N  N  N  14.860  -55.737  -4.090    6.190   1.199   2.346  H10  J4C  51  
J4C  H11  H11  H   0  1  N  N  N   8.970  -55.958  -3.311    2.380  -3.010   2.500  H11  J4C  52  
J4C  H12  H12  H   0  1  N  N  N   9.843  -54.395  -3.452    0.908  -2.062   2.823  H12  J4C  53  
J4C  H13  H13  H   0  1  N  N  N   9.980  -55.622  -4.757    1.247  -2.646   1.176  H13  J4C  54  
J4C  H14  H14  H   0  1  N  N  N  11.544  -60.069   0.772    2.122   3.516  -0.975  H14  J4C  55  
J4C  H15  H15  H   0  1  N  N  N  12.956  -60.051  -0.339    0.973   4.133   0.236  H15  J4C  56  
J4C  H16  H16  H   0  1  N  N  N  12.833  -58.835   0.978    2.686   3.909   0.667  H16  J4C  57  
J4C  H17  H17  H   0  1  N  N  N   8.068  -60.287   1.991   -1.395   0.327   1.922  H17  J4C  58  
J4C  H18  H18  H   0  1  N  N  N   5.622  -60.629   1.985   -3.506  -0.910   2.141  H18  J4C  59  
J4C  H19  H19  H   0  1  N  N  N   5.454  -59.367  -2.096   -5.012   1.059  -1.362  H19  J4C  60  
J4C  H20  H20  H   0  1  N  N  N   7.890  -59.018  -2.089   -2.898   2.292  -1.572  H20  J4C  61  
J4C  H21  H21  H   0  1  N  N  N  15.987  -53.778  -4.410    6.618  -2.335   1.441  H21  J4C  62  
J4C  H22  H22  H   0  1  N  N  N  16.580  -51.474  -3.745    7.865  -3.085  -0.545  H22  J4C  63  
J4C  H23  H23  H   0  1  N  N  N  14.240  -54.503  -0.566    6.830   1.694   0.058  H23  J4C  64  
J4C  H24  H24  H   0  1  N  N  N  10.013  -59.997   0.682   -0.810   2.970  -0.356  H24  J4C  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J4C  OE1  CD   DOUB  N  N   1  
J4C  CD   OE2  SING  N  N   2  
J4C  CD   CG   SING  N  N   3  
J4C  O2   C2   DOUB  N  N   4  
J4C  CAH  N3   SING  N  N   5  
J4C  CG   CB   SING  N  N   6  
J4C  CAW  CAX  DOUB  Y  N   7  
J4C  CAW  CAV  SING  Y  N   8  
J4C  OXT  C    DOUB  N  N   9  
J4C  C2   N3   SING  N  N  10  
J4C  C2   N1   SING  N  N  11  
J4C  CAX  CAY  SING  Y  N  12  
J4C  CAA  N1   SING  N  N  13  
J4C  CAA  CAV  SING  N  N  14  
J4C  N3   C4   SING  N  N  15  
J4C  N1   C6   SING  N  N  16  
J4C  CB   CA   SING  N  N  17  
J4C  CAV  CBA  DOUB  Y  N  18  
J4C  C    CA   SING  N  N  19  
J4C  C    O    SING  N  N  20  
J4C  C4   N9   SING  Y  N  21  
J4C  C4   C5   DOUB  Y  N  22  
J4C  C6   C5   SING  N  N  23  
J4C  C6   O6   DOUB  N  N  24  
J4C  CAY  CL1  SING  N  N  25  
J4C  CAY  CAZ  DOUB  Y  N  26  
J4C  N9   C8   DOUB  Y  N  27  
J4C  CA   N    SING  N  N  28  
J4C  C5   N7   SING  Y  N  29  
J4C  CBA  CAZ  SING  Y  N  30  
J4C  N    CBD  SING  N  N  31  
J4C  CAT  CAU  DOUB  Y  N  32  
J4C  CAT  CAS  SING  Y  N  33  
J4C  CAU  CAP  SING  Y  N  34  
J4C  CAZ  CL2  SING  N  N  35  
J4C  C8   N7   SING  Y  N  36  
J4C  C8   NAO  SING  N  N  37  
J4C  N7   CAN  SING  N  N  38  
J4C  CBD  CAS  SING  N  N  39  
J4C  CBD  OBE  DOUB  N  N  40  
J4C  CAS  CAR  DOUB  Y  N  41  
J4C  CAP  NAO  SING  N  N  42  
J4C  CAP  CAQ  DOUB  Y  N  43  
J4C  CAR  CAQ  SING  Y  N  44  
J4C  N    H1   SING  N  N  45  
J4C  CA   H2   SING  N  N  46  
J4C  O    H3   SING  N  N  47  
J4C  CB   H4   SING  N  N  48  
J4C  CB   H5   SING  N  N  49  
J4C  CG   H6   SING  N  N  50  
J4C  CG   H7   SING  N  N  51  
J4C  OE2  H8   SING  N  N  52  
J4C  CAA  H9   SING  N  N  53  
J4C  CAA  H10  SING  N  N  54  
J4C  CAH  H11  SING  N  N  55  
J4C  CAH  H12  SING  N  N  56  
J4C  CAH  H13  SING  N  N  57  
J4C  CAN  H14  SING  N  N  58  
J4C  CAN  H15  SING  N  N  59  
J4C  CAN  H16  SING  N  N  60  
J4C  CAQ  H17  SING  N  N  61  
J4C  CAR  H18  SING  N  N  62  
J4C  CAT  H19  SING  N  N  63  
J4C  CAU  H20  SING  N  N  64  
J4C  CAW  H21  SING  N  N  65  
J4C  CAX  H22  SING  N  N  66  
J4C  CBA  H23  SING  N  N  67  
J4C  NAO  H24  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J4C  InChI             InChI                 1.03   "InChI=1S/C26H24Cl2N6O7/c1-32-20-21(33(2)26(41)34(23(20)38)12-13-3-8-16(27)17(28)11-13)31-25(32)29-15-6-4-14(5-7-15)22(37)30-18(24(39)40)9-10-19(35)36/h3-8,11,18H,9-10,12H2,1-2H3,(H,29,31)(H,30,37)(H,35,36)(H,39,40)/t18-/m0/s1"  
J4C  InChIKey          InChI                 1.03   VGQGEPKBLLWTIL-SFHVURJKSA-N  
J4C  SMILES_CANONICAL  CACTVS                3.385  "CN1C(=O)N(Cc2ccc(Cl)c(Cl)c2)C(=O)c3n(C)c(Nc4ccc(cc4)C(=O)N[C@@H](CCC(O)=O)C(O)=O)nc13"  
J4C  SMILES            CACTVS                3.385  "CN1C(=O)N(Cc2ccc(Cl)c(Cl)c2)C(=O)c3n(C)c(Nc4ccc(cc4)C(=O)N[CH](CCC(O)=O)C(O)=O)nc13"  
J4C  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cn1c2c(nc1Nc3ccc(cc3)C(=O)N[C@@H](CCC(=O)O)C(=O)O)N(C(=O)N(C2=O)Cc4ccc(c(c4)Cl)Cl)C"  
J4C  SMILES            "OpenEye OEToolkits"  2.0.7  "Cn1c2c(nc1Nc3ccc(cc3)C(=O)NC(CCC(=O)O)C(=O)O)N(C(=O)N(C2=O)Cc4ccc(c(c4)Cl)Cl)C"  
#
_pdbx_chem_comp_identifier.comp_id          J4C
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[4-[[1-[(3,4-dichlorophenyl)methyl]-3,7-dimethyl-2,6-bis(oxidanylidene)purin-8-yl]amino]phenyl]carbonylamino]pentanedioic acid"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     J4C
_pdbx_chem_comp_synonyms.name        "(4-((1-(3,4-dichlorobenzyl)-3,7-dimethyl-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-8-yl)amino)benzoyl)-L-glutamic acid"
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J4C  "Create component"  2021-04-05  PDBJ  
J4C  "Initial release"   2021-08-11  RCSB  
##
