data_J1C
# 
_chem_comp.id                                    J1C 
_chem_comp.name                                  "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H36 N12 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-11-11 
_chem_comp.pdbx_modified_date                    2011-12-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        628.706 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J1C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3UDV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J1C C1   C1   C 0 1 N N S 1.921 17.243 15.588 -3.691  0.193  1.018  C1   J1C 1  
J1C N1   N1   N 0 1 Y N N 2.629 14.362 13.483 -7.087  0.506  -0.129 N1   J1C 2  
J1C O1   O1   O 0 1 N N N 1.964 16.456 14.402 -4.712  0.257  0.007  O1   J1C 3  
J1C S1   S1   S 0 1 N N N 3.931 19.384 15.145 -1.905  -0.906 -0.738 S1   J1C 4  
J1C C2   C2   C 0 1 N N S 2.917 16.540 16.568 -4.402  0.123  2.383  C2   J1C 5  
J1C N2   N2   N 0 1 Y N N 2.303 12.985 11.646 -8.449  -0.570 -1.452 N2   J1C 6  
J1C O2   O2   O 0 1 N N N 2.267 16.391 17.793 -4.018  1.226  3.205  O2   J1C 7  
J1C C3   C3   C 0 1 N N R 3.205 15.124 15.883 -5.908  0.207  2.032  C3   J1C 8  
J1C N3   N3   N 0 1 N N N 4.639 12.439 9.655  -11.323 0.364  -2.016 N3   J1C 9  
J1C O3   O3   O 0 1 N N N 2.964 14.052 16.765 -6.601  1.045  2.958  O3   J1C 10 
J1C C4   C4   C 0 1 N N R 2.201 15.101 14.714 -5.876  0.850  0.621  C4   J1C 11 
J1C N4   N4   N 0 1 Y N N 5.922 13.830 11.030 -10.772 2.129  -0.552 N4   J1C 12 
J1C O4   O4   O 0 1 N N N 4.812 25.488 11.104 5.827   -2.519 1.411  O4   J1C 13 
J1C C5   C5   C 0 1 Y N N 1.739 13.533 12.726 -7.250  -0.573 -0.947 C5   J1C 14 
J1C N5   N5   N 0 1 Y N N 5.020 14.919 13.035 -8.701  2.315  0.458  N5   J1C 15 
J1C O5   O5   O 0 1 N N N 9.362 24.901 7.068  5.623   2.747  -1.691 O5   J1C 16 
J1C C6   C6   C 0 1 Y N N 3.624 13.457 11.649 -9.131  0.506  -0.990 C6   J1C 17 
J1C N6   N6   N 0 1 N N N 5.294 19.996 11.416 1.575   -3.809 -1.038 N6   J1C 18 
J1C C7   C7   C 0 1 Y N N 4.716 13.230 10.760 -10.427 1.013  -1.185 C7   J1C 19 
J1C C8   C8   C 0 1 Y N N 5.974 14.614 12.130 -9.925  2.751  0.248  C8   J1C 20 
J1C N8   N8   N 0 1 N N N 7.290 28.217 5.846  9.297   2.415  -0.235 N8   J1C 21 
J1C C9   C9   C 0 1 Y N N 3.836 14.310 12.771 -8.266  1.208  -0.134 C9   J1C 22 
J1C N9   N9   N 0 1 N N N 8.997 28.429 4.217  9.788   4.540  -1.010 N9   J1C 23 
J1C C10  C10  C 0 1 N N N 2.162 18.779 15.301 -2.834  -1.058 0.812  C10  J1C 24 
J1C N10  N10  N 0 1 N N N 9.126 26.635 5.694  7.648   3.638  -1.368 N10  J1C 25 
J1C C11  C11  C 0 1 N N N 4.979 18.306 13.936 -0.966  -2.456 -0.804 C11  J1C 26 
J1C N11  N11  N 0 1 N N N 6.993 25.589 8.470  6.299   0.447  -0.353 N11  J1C 27 
J1C C12  C12  C 0 1 N N N 4.235 18.030 12.643 -0.211  -2.541 -2.134 C12  J1C 28 
J1C N12  N12  N 0 1 N N N 5.679 27.889 7.554  8.870   0.237  0.576  N12  J1C 29 
J1C C13  C13  C 0 1 N N N 4.017 19.347 11.882 0.627   -3.822 -2.159 C13  J1C 30 
J1C C14  C14  C 0 1 N N N 6.387 20.033 12.495 0.873   -3.776 0.251  C14  J1C 31 
J1C C15  C15  C 0 1 N N N 6.367 18.880 13.556 0.042   -2.494 0.348  C15  J1C 32 
J1C C16  C16  C 0 1 N N N 4.981 21.279 10.616 2.514   -2.686 -1.155 C16  J1C 33 
J1C C18  C18  C 0 1 N N N 5.448 25.006 10.166 5.638   -1.653 0.577  C18  J1C 34 
J1C C19  C19  C 0 1 N N N 8.443 27.756 5.285  8.905   3.508  -0.863 C19  J1C 35 
J1C C20  C20  C 0 1 N N N 8.670 25.873 6.797  6.747   2.641  -1.232 C20  J1C 36 
J1C C21  C21  C 0 1 N N N 5.896 25.937 9.060  6.574   -0.533 0.461  C21  J1C 37 
J1C C22  C22  C 0 1 N N N 5.087 27.190 8.734  7.837   -0.537 1.283  C22  J1C 38 
J1C C23  C23  C 0 1 N N N 4.988 28.245 9.833  8.318   -1.976 1.477  C23  J1C 39 
J1C C24  C24  C 0 1 N N N 3.645 26.773 8.387  7.562   0.102  2.647  C24  J1C 40 
J1C C25  C25  C 0 1 N N N 6.818 27.481 6.923  8.470   1.391  -0.062 C25  J1C 41 
J1C C26  C26  C 0 1 N N N 7.447 26.340 7.401  7.143   1.469  -0.539 C26  J1C 42 
J1C C27  C27  C 0 1 N N N 5.297 22.686 11.185 3.631   -2.845 -0.121 C27  J1C 43 
J1C N28  N28  N 0 1 N N N 5.725 23.637 10.121 4.568   -1.724 -0.238 N28  J1C 44 
J1C H1   H1   H 0 1 N N N 0.927 17.280 16.058 -3.066  1.085  0.971  H1   J1C 45 
J1C H2   H2   H 0 1 N N N 3.852 17.090 16.747 -4.178  -0.820 2.882  H2   J1C 46 
J1C HO2  HO2  H 0 1 N N N 2.849 15.965 18.411 -4.436  1.232  4.077  HO2  J1C 47 
J1C H3   H3   H 0 1 N N N 4.254 15.009 15.573 -6.356  -0.786 1.997  H3   J1C 48 
J1C HN3  HN3  H 0 1 N N N 5.526 12.423 9.193  -12.215 0.724  -2.142 HN3  J1C 49 
J1C HN3A HN3A H 0 0 N N N 4.389 11.510 9.927  -11.059 -0.450 -2.473 HN3A J1C 50 
J1C HO3  HO3  H 0 1 N N N 3.146 13.231 16.323 -6.571  0.730  3.872  HO3  J1C 51 
J1C H4   H4   H 0 1 N N N 1.312 14.543 15.043 -5.764  1.932  0.692  H4   J1C 52 
J1C H5   H5   H 0 1 N N N 0.708 13.367 13.003 -6.495  -1.319 -1.145 H5   J1C 53 
J1C H8   H8   H 0 1 N N N 6.935 15.071 12.315 -10.246 3.656  0.743  H8   J1C 54 
J1C HN9  HN9  H 0 1 N N N 8.553 29.250 3.859  10.688  4.463  -0.656 HN9  J1C 55 
J1C HN9A HN9A H 0 0 N N N 9.843 28.096 3.801  9.516   5.350  -1.469 HN9A J1C 56 
J1C H10  H10  H 0 1 N N N 1.667 19.003 14.345 -2.138  -1.161 1.644  H10  J1C 57 
J1C H10A H10A H 0 0 N N N 1.713 19.331 16.140 -3.478  -1.936 0.765  H10A J1C 58 
J1C HN10 HN10 H 0 0 N N N 9.953 26.355 5.207  7.398   4.453  -1.830 HN10 J1C 59 
J1C H11  H11  H 0 1 N N N 5.148 17.386 14.515 -1.650  -3.300 -0.719 H11  J1C 60 
J1C H12  H12  H 0 1 N N N 4.826 17.342 12.021 -0.926  -2.558 -2.957 H12  J1C 61 
J1C H12A H12A H 0 0 N N N 3.260 17.574 12.872 0.443   -1.676 -2.237 H12A J1C 62 
J1C HN12 HN12 H 0 0 N N N 4.969 27.855 6.851  9.795   -0.053 0.559  HN12 J1C 63 
J1C H13  H13  H 0 1 N N N 3.503 20.049 12.555 1.176   -3.878 -3.099 H13  J1C 64 
J1C H13A H13A H 0 0 N N N 3.401 19.132 10.997 -0.030  -4.687 -2.070 H13A J1C 65 
J1C H14  H14  H 0 1 N N N 7.356 19.980 11.977 0.215   -4.641 0.329  H14  J1C 66 
J1C H14A H14A H 0 0 N N N 6.270 20.980 13.043 1.600   -3.799 1.062  H14A J1C 67 
J1C H15  H15  H 0 1 N N N 6.815 19.280 14.477 0.700   -1.628 0.284  H15  J1C 68 
J1C H15A H15A H 0 0 N N N 6.959 18.050 13.143 -0.492  -2.477 1.298  H15A J1C 69 
J1C H16  H16  H 0 1 N N N 5.563 21.198 9.686  2.945   -2.675 -2.156 H16  J1C 70 
J1C H16A H16A H 0 0 N N N 3.894 21.265 10.446 1.985   -1.750 -0.977 H16A J1C 71 
J1C H23  H23  H 0 1 N N N 4.556 27.793 10.738 9.319   -1.970 1.910  H23  J1C 72 
J1C H23A H23A H 0 0 N N N 5.992 28.633 10.060 7.636   -2.500 2.146  H23A J1C 73 
J1C H23B H23B H 0 0 N N N 4.345 29.070 9.493  8.343   -2.484 0.513  H23B J1C 74 
J1C H24  H24  H 0 1 N N N 3.195 26.256 9.248  7.215   1.125  2.505  H24  J1C 75 
J1C H24A H24A H 0 0 N N N 3.053 27.668 8.146  6.798   -0.472 3.169  H24A J1C 76 
J1C H24B H24B H 0 0 N N N 3.658 26.097 7.519  8.479   0.107  3.237  H24B J1C 77 
J1C H27  H27  H 0 1 N N N 4.390 23.082 11.666 3.200   -2.855 0.880  H27  J1C 78 
J1C H27A H27A H 0 0 N N N 6.110 22.593 11.920 4.160   -3.781 -0.299 H27A J1C 79 
J1C HN28 HN28 H 0 0 N N N 6.234 23.279 9.338  4.417   -1.033 -0.902 HN28 J1C 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J1C C1  O1   SING N N 1  
J1C C1  C2   SING N N 2  
J1C C1  C10  SING N N 3  
J1C N1  C4   SING N N 4  
J1C N1  C5   SING Y N 5  
J1C N1  C9   SING Y N 6  
J1C O1  C4   SING N N 7  
J1C S1  C10  SING N N 8  
J1C S1  C11  SING N N 9  
J1C C2  O2   SING N N 10 
J1C C2  C3   SING N N 11 
J1C N2  C5   DOUB Y N 12 
J1C N2  C6   SING Y N 13 
J1C C3  O3   SING N N 14 
J1C C3  C4   SING N N 15 
J1C N3  C7   SING N N 16 
J1C N4  C7   DOUB Y N 17 
J1C N4  C8   SING Y N 18 
J1C O4  C18  DOUB N N 19 
J1C N5  C8   DOUB Y N 20 
J1C N5  C9   SING Y N 21 
J1C O5  C20  DOUB N N 22 
J1C C6  C7   SING Y N 23 
J1C C6  C9   DOUB Y N 24 
J1C N6  C13  SING N N 25 
J1C N6  C14  SING N N 26 
J1C N6  C16  SING N N 27 
J1C N8  C19  DOUB N N 28 
J1C N8  C25  SING N N 29 
J1C N9  C19  SING N N 30 
J1C N10 C19  SING N N 31 
J1C N10 C20  SING N N 32 
J1C C11 C12  SING N N 33 
J1C C11 C15  SING N N 34 
J1C N11 C21  DOUB N N 35 
J1C N11 C26  SING N N 36 
J1C C12 C13  SING N N 37 
J1C N12 C22  SING N N 38 
J1C N12 C25  SING N N 39 
J1C C14 C15  SING N N 40 
J1C C16 C27  SING N N 41 
J1C C18 C21  SING N N 42 
J1C C18 N28  SING N N 43 
J1C C20 C26  SING N N 44 
J1C C21 C22  SING N N 45 
J1C C22 C23  SING N N 46 
J1C C22 C24  SING N N 47 
J1C C25 C26  DOUB N N 48 
J1C C27 N28  SING N N 49 
J1C C1  H1   SING N N 50 
J1C C2  H2   SING N N 51 
J1C O2  HO2  SING N N 52 
J1C C3  H3   SING N N 53 
J1C N3  HN3  SING N N 54 
J1C N3  HN3A SING N N 55 
J1C O3  HO3  SING N N 56 
J1C C4  H4   SING N N 57 
J1C C5  H5   SING N N 58 
J1C C8  H8   SING N N 59 
J1C N9  HN9  SING N N 60 
J1C N9  HN9A SING N N 61 
J1C C10 H10  SING N N 62 
J1C C10 H10A SING N N 63 
J1C N10 HN10 SING N N 64 
J1C C11 H11  SING N N 65 
J1C C12 H12  SING N N 66 
J1C C12 H12A SING N N 67 
J1C N12 HN12 SING N N 68 
J1C C13 H13  SING N N 69 
J1C C13 H13A SING N N 70 
J1C C14 H14  SING N N 71 
J1C C14 H14A SING N N 72 
J1C C15 H15  SING N N 73 
J1C C15 H15A SING N N 74 
J1C C16 H16  SING N N 75 
J1C C16 H16A SING N N 76 
J1C C23 H23  SING N N 77 
J1C C23 H23A SING N N 78 
J1C C23 H23B SING N N 79 
J1C C24 H24  SING N N 80 
J1C C24 H24A SING N N 81 
J1C C24 H24B SING N N 82 
J1C C27 H27  SING N N 83 
J1C C27 H27A SING N N 84 
J1C N28 HN28 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J1C SMILES           ACDLabs              12.01 "O=C2NC(=NC=1NC(C(=NC=12)C(=O)NCCN6CCC(SCC5OC(n4cnc3c(ncnc34)N)C(O)C5O)CC6)(C)C)N" 
J1C InChI            InChI                1.03  
;InChI=1S/C26H36N12O5S/c1-26(2)18(33-15-20(36-26)34-25(28)35-22(15)41)23(42)29-5-8-37-6-3-12(4-7-37)44-9-13-16(39)17(40)24(43-13)38-11-32-14-19(27)30-10-31-21(14)38/h10-13,16-17,24,39-40H,3-9H2,1-2H3,(H,29,42)(H2,27,30,31)(H4,28,34,35,36,41)/t13-,16-,17-,24-/m1/s1
;
J1C InChIKey         InChI                1.03  LXHMIPYFQUZUMS-FUKGTJLDSA-N 
J1C SMILES_CANONICAL CACTVS               3.370 "CC1(C)NC2=C(N=C1C(=O)NCCN3CCC(CC3)SC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N" 
J1C SMILES           CACTVS               3.370 "CC1(C)NC2=C(N=C1C(=O)NCCN3CCC(CC3)SC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N" 
J1C SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCCN3CCC(CC3)SC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)C" 
J1C SMILES           "OpenEye OEToolkits" 1.7.2 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCCN3CCC(CC3)SCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
J1C "SYSTEMATIC NAME" ACDLabs              12.01 "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine"                                                           
J1C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N-[2-[4-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]piperidin-1-yl]ethyl]-2-azanyl-7,7-dimethyl-4-oxidanylidene-3,8-dihydropteridine-6-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J1C "Create component" 2011-11-11 RCSB 
# 
