data_H5C
#

_chem_comp.id                                   H5C
_chem_comp.name                                 "9-[(2R,3R,4R)-5-(hydroxymethyl)-3-methoxy-4-oxidanyl-oxolan-2-yl]-3H-purine-2,6-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H14 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-12
_chem_comp.pdbx_modified_date                   2022-01-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       298.252
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    H5C
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       7DGC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H5C  C02  C1   C  0  1  N  N  N  -11.381  -51.936  -2.551  ?  ?  ?  C02  H5C   1  
H5C  C03  C2   C  0  1  Y  N  N  -10.547  -51.419  -3.728  ?  ?  ?  C03  H5C   2  
H5C  C05  C3   C  0  1  Y  N  N   -9.560  -50.977  -5.632  ?  ?  ?  C05  H5C   3  
H5C  C07  C4   C  0  1  N  N  R   -8.045  -49.088  -4.879  ?  ?  ?  C07  H5C   4  
H5C  C08  C5   C  0  1  N  N  R   -6.840  -49.531  -5.775  ?  ?  ?  C08  H5C   5  
H5C  C10  C6   C  0  1  N  N  N   -5.679  -50.778  -4.253  ?  ?  ?  C10  H5C   6  
H5C  C11  C7   C  0  1  N  N  R   -6.668  -48.332  -6.777  ?  ?  ?  C11  H5C   7  
H5C  C13  C8   C  0  1  N  N  R   -7.868  -47.927  -6.976  ?  ?  ?  C13  H5C   8  
H5C  C14  C9   C  0  1  N  N  N   -8.552  -48.797  -7.985  ?  ?  ?  C14  H5C   9  
H5C  C17  C10  C  0  1  Y  N  N   -9.655  -50.403  -3.530  ?  ?  ?  C17  H5C  10  
H5C  C19  C11  C  0  1  N  N  N  -10.293  -50.275  -1.058  ?  ?  ?  C19  H5C  11  
H5C  N04  N1   N  0  1  Y  N  N  -10.485  -51.769  -5.027  ?  ?  ?  N04  H5C  12  
H5C  N06  N2   N  0  1  Y  N  N   -9.056  -50.141  -4.694  ?  ?  ?  N06  H5C  13  
H5C  N18  N3   N  0  1  N  N  N   -9.497  -49.787  -2.180  ?  ?  ?  N18  H5C  14  
H5C  N20  N4   N  0  1  N  N  N  -11.228  -51.351  -1.258  ?  ?  ?  N20  H5C  15  
H5C  O01  O1   O  0  1  N  N  N  -12.157  -52.815  -2.715  ?  ?  ?  O01  H5C  16  
H5C  O09  O2   O  0  1  N  N  N   -5.745  -49.625  -5.040  ?  ?  ?  O09  H5C  17  
H5C  O12  O3   O  0  1  N  N  N   -5.896  -47.265  -6.089  ?  ?  ?  O12  H5C  18  
H5C  O15  O4   O  0  1  N  N  N   -9.275  -47.986  -8.868  ?  ?  ?  O15  H5C  19  
H5C  O16  O5   O  0  1  N  N  N   -8.602  -48.076  -5.479  ?  ?  ?  O16  H5C  20  
H5C  O21  O6   O  0  1  N  N  N  -10.162  -49.783   0.013  ?  ?  ?  O21  H5C  21  
H5C  H1   H1   H  0  1  N  N  N   -9.278  -51.009  -6.674  ?  ?  ?  H1   H5C  22  
H5C  H2   H2   H  0  1  N  N  N   -7.644  -48.802  -3.895  ?  ?  ?  H2   H5C  23  
H5C  H3   H3   H  0  1  N  N  N   -7.093  -50.450  -6.324  ?  ?  ?  H3   H5C  24  
H5C  H4   H4   H  0  1  N  N  N   -4.742  -50.776  -3.677  ?  ?  ?  H4   H5C  25  
H5C  H5   H5   H  0  1  N  N  N   -6.534  -50.799  -3.561  ?  ?  ?  H5   H5C  26  
H5C  H6   H6   H  0  1  N  N  N   -5.709  -51.666  -4.901  ?  ?  ?  H6   H5C  27  
H5C  H7   H7   H  0  1  N  N  N   -6.146  -48.675  -7.682  ?  ?  ?  H7   H5C  28  
H5C  H8   H8   H  0  1  N  N  N   -7.933  -46.872  -7.281  ?  ?  ?  H8   H5C  29  
H5C  H10  H10  H  0  1  N  N  N   -7.801  -49.374  -8.545  ?  ?  ?  H10  H5C  30  
H5C  H11  H11  H  0  1  N  N  N   -9.238  -49.488  -7.472  ?  ?  ?  H11  H5C  31  
H5C  H12  H12  H  0  1  N  N  N   -8.846  -49.040  -2.044  ?  ?  ?  H12  H5C  32  
H5C  H13  H13  H  0  1  N  N  N  -11.771  -51.689  -0.490  ?  ?  ?  H13  H5C  33  
H5C  H14  H14  H  0  1  N  N  N   -5.780  -46.528  -6.677  ?  ?  ?  H14  H5C  34  
H5C  H15  H15  H  0  1  N  N  N   -9.713  -48.530  -9.512  ?  ?  ?  H15  H5C  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H5C  C02  C03  SING  N  N   1  
H5C  C02  N20  SING  N  N   2  
H5C  C02  O01  DOUB  N  N   3  
H5C  C03  C17  DOUB  Y  N   4  
H5C  C03  N04  SING  Y  N   5  
H5C  C05  N04  DOUB  Y  N   6  
H5C  C05  N06  SING  Y  N   7  
H5C  C07  C08  SING  N  N   8  
H5C  C07  N06  SING  N  N   9  
H5C  C07  O16  SING  N  N  10  
H5C  C08  C11  SING  N  N  11  
H5C  C08  O09  SING  N  N  12  
H5C  C10  O09  SING  N  N  13  
H5C  C11  C13  SING  N  N  14  
H5C  C11  O12  SING  N  N  15  
H5C  C13  C14  SING  N  N  16  
H5C  C14  O15  SING  N  N  17  
H5C  C17  N06  SING  Y  N  18  
H5C  C17  N18  SING  N  N  19  
H5C  C19  N18  SING  N  N  20  
H5C  C19  N20  SING  N  N  21  
H5C  C19  O21  DOUB  N  N  22  
H5C  C05  H1   SING  N  N  23  
H5C  C07  H2   SING  N  N  24  
H5C  C08  H3   SING  N  N  25  
H5C  C10  H4   SING  N  N  26  
H5C  C10  H5   SING  N  N  27  
H5C  C10  H6   SING  N  N  28  
H5C  C11  H7   SING  N  N  29  
H5C  C13  H8   SING  N  N  30  
H5C  C14  H10  SING  N  N  31  
H5C  C14  H11  SING  N  N  32  
H5C  N18  H12  SING  N  N  33  
H5C  N20  H13  SING  N  N  34  
H5C  O12  H14  SING  N  N  35  
H5C  O15  H15  SING  N  N  36  
H5C  O16  C13  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H5C  InChI             InChI                 1.03   "InChI=1S/C11H14N4O6/c1-20-7-6(17)4(2-16)21-10(7)15-3-12-5-8(15)13-11(19)14-9(5)18/h3-4,6-7,10,16-17H,2H2,1H3,(H2,13,14,18,19)/t4-,6-,7-,10-/m1/s1"  
H5C  InChIKey          InChI                 1.03   PASFATVSJBQETG-KQYNXXCUSA-N  
H5C  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1n2cnc3C(=O)NC(=O)Nc23"  
H5C  SMILES            CACTVS                3.385  "CO[CH]1[CH](O)[CH](CO)O[CH]1n2cnc3C(=O)NC(=O)Nc23"  
H5C  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CO[C@@H]1[C@@H](C(O[C@H]1n2cnc3c2NC(=O)NC3=O)CO)O"  
H5C  SMILES            "OpenEye OEToolkits"  2.0.7  "COC1C(C(OC1n2cnc3c2NC(=O)NC3=O)CO)O"  
#
_pdbx_chem_comp_identifier.comp_id          H5C
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "9-[(2~{R},3~{R},4~{R})-5-(hydroxymethyl)-3-methoxy-4-oxidanyl-oxolan-2-yl]-3~{H}-purine-2,6-dione"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H5C  "Create component"  2020-11-12  PDBJ  
H5C  "Initial release"   2022-02-02  RCSB  
##
