data_G1C
# 
_chem_comp.id                                    G1C 
_chem_comp.name                                  "5'-O-[(R)-{[(S)-[(S)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H17 Cl N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-11 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        539.653 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G1C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JPO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G1C N1     N1     N  0 1 N N N 1.975  3.350  0.098  -8.234 1.996  -0.023 N1     G1C 1  
G1C C2     C2     C  0 1 N N N 2.241  2.016  -0.036 -7.670 1.614  1.158  C2     G1C 2  
G1C N2     N2     N  0 1 N N N 2.608  1.488  -1.270 -8.324 1.898  2.331  N2     G1C 3  
G1C N3     N3     N  0 1 N N N 2.132  1.177  1.029  -6.519 0.982  1.206  N3     G1C 4  
G1C C4     C4     C  0 1 Y N N 1.743  1.673  2.229  -5.847 0.684  0.088  C4     G1C 5  
G1C C5     C5     C  0 1 Y N N 1.443  3.020  2.391  -6.374 1.049  -1.156 C5     G1C 6  
G1C C6     C6     C  0 1 N N N 1.565  3.879  1.286  -7.614 1.730  -1.193 C6     G1C 7  
G1C O6     O6     O  0 1 N N N 1.300  5.098  1.380  -8.110 2.067  -2.254 O6     G1C 8  
G1C N7     N7     N  0 1 Y N N 1.056  3.233  3.655  -5.499 0.630  -2.102 N7     G1C 9  
G1C C8     C8     C  0 1 Y N N 1.126  2.029  4.256  -4.491 0.043  -1.527 C8     G1C 10 
G1C N9     N9     N  0 1 Y N N 1.560  1.062  3.412  -4.661 0.052  -0.173 N9     G1C 11 
G1C PA     PA     P  0 1 N N N 2.712  2.133  7.967  1.824  -1.542 -0.748 PA     G1C 12 
G1C PB     PB     P  0 1 N N N 1.103  2.228  10.172 4.458  -0.214 -0.461 PB     G1C 13 
G1C PG     PG     P  0 1 N N N -1.765 2.352  9.720  6.769  1.567  0.131  PG     G1C 14 
G1C "C1'"  "C1'"  C  0 1 N N R 1.763  -0.339 3.690  -3.743 -0.512 0.820  "C1'"  G1C 15 
G1C O1A    O1A    O  0 1 N N N 2.983  3.221  6.951  1.553  -1.424 -2.331 O1A    G1C 16 
G1C O1B    O1B    O  0 1 N N N 2.176  2.818  11.060 4.834  -0.182 -2.027 O1B    G1C 17 
G1C O1G    O1G    O  0 1 N N N -1.597 2.587  8.238  7.145  1.599  -1.435 O1G    G1C 18 
G1C "C2'"  "C2'"  C  0 1 N N N 3.197  -0.843 3.374  -4.184 -1.942 1.189  "C2'"  G1C 19 
G1C O2A    O2A    O  0 1 N N N 3.877  2.014  8.868  2.386  -2.877 -0.442 O2A    G1C 20 
G1C O2B    O2B    O  0 1 N N N 1.024  0.773  10.407 5.160  -1.342 0.191  O2B    G1C 21 
G1C O2G    O2G    O  0 1 N N N -3.012 3.065  10.193 7.220  2.950  0.819  O2G    G1C 22 
G1C "C3'"  "C3'"  C  0 1 N N S 3.582  -1.653 4.619  -2.959 -2.819 0.835  "C3'"  G1C 23 
G1C "O3'"  "O3'"  O  0 1 N N N 3.246  -3.030 4.455  -2.741 -3.818 1.834  "O3'"  G1C 24 
G1C O3A    O3A    O  0 1 N N N 1.446  2.512  8.719  2.868  -0.403 -0.296 O3A    G1C 25 
G1C C3B    C3B    C  0 1 N N S -0.402 2.983  10.574 4.968  1.352  0.319  C3B    G1C 26 
G1C CL3B   CL3B   CL 0 0 N N N -0.276 4.718  10.295 4.547  1.316  2.071  CL3B   G1C 27 
G1C O3G    O3G    O  0 1 N N N -1.907 0.905  9.983  7.471  0.439  0.783  O3G    G1C 28 
G1C "C4'"  "C4'"  C  0 1 N N R 2.710  -1.013 5.720  -1.807 -1.782 0.829  "C4'"  G1C 29 
G1C "O4'"  "O4'"  O  0 1 N N N 1.482  -0.674 5.063  -2.420 -0.602 0.266  "O4'"  G1C 30 
G1C "C5'"  "C5'"  C  0 1 N N N 3.361  0.224  6.399  -0.654 -2.263 -0.054 "C5'"  G1C 31 
G1C "O5'"  "O5'"  O  0 1 N N N 2.492  0.818  7.232  0.439  -1.348 0.049  "O5'"  G1C 32 
G1C HN1    HN1    H  0 1 N N N 2.084  3.952  -0.693 -9.087 2.458  -0.023 HN1    G1C 33 
G1C HN2    HN2    H  0 1 N N N 2.786  0.508  -1.362 -9.174 2.364  2.312  HN2    G1C 34 
G1C HN2A   HN2A   H  0 0 N N N 2.694  2.088  -2.065 -7.935 1.633  3.179  HN2A   G1C 35 
G1C H8     H8     H  0 1 N N N 0.866  1.855  5.290  -3.645 -0.387 -2.043 H8     G1C 36 
G1C "H1'"  "H1'"  H  0 1 N N N 1.052  -0.840 3.017  -3.733 0.114  1.712  "H1'"  G1C 37 
G1C "H2'"  "H2'"  H  0 1 N N N 3.213  -1.467 2.468  -4.407 -2.010 2.254  "H2'"  G1C 38 
G1C "H2'A" "H2'A" H  0 0 N N N 3.890  -0.005 3.210  -5.050 -2.239 0.597  "H2'A" G1C 39 
G1C "H3'"  "H3'"  H  0 1 N N N 4.660  -1.630 4.837  -3.078 -3.275 -0.148 "H3'"  G1C 40 
G1C "HO3'" "HO3'" H  0 0 N N N 3.493  -3.512 5.236  -3.476 -4.437 1.938  "HO3'" G1C 41 
G1C H3B    H3B    H  0 1 N N N -0.585 2.763  11.636 4.451  2.183  -0.162 H3B    G1C 42 
G1C "H4'"  "H4'"  H  0 1 N N N 2.566  -1.715 6.555  -1.460 -1.588 1.844  "H4'"  G1C 43 
G1C "H5'"  "H5'"  H  0 1 N N N 4.242  -0.102 6.971  -0.333 -3.251 0.275  "H5'"  G1C 44 
G1C "H5'A" "H5'A" H  0 0 N N N 3.664  0.942  5.623  -0.987 -2.316 -1.090 "H5'A" G1C 45 
G1C H14    H14    H  0 1 N N N 3.842  3.595  7.108  1.183  -0.573 -2.604 H14    G1C 46 
G1C H15    H15    H  0 1 N N N 2.572  2.129  11.580 4.409  0.534  -2.519 H15    G1C 47 
G1C H16    H16    H  0 1 N N N -1.617 1.755  7.781  6.720  2.315  -1.927 H16    G1C 48 
G1C H17    H17    H  0 1 N N N -3.620 2.433  10.558 8.168  3.130  0.757  H17    G1C 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G1C N1    C2     SING N N 1  
G1C N1    C6     SING N N 2  
G1C N1    HN1    SING N N 3  
G1C C2    N2     SING N N 4  
G1C C2    N3     DOUB N N 5  
G1C N2    HN2    SING N N 6  
G1C N2    HN2A   SING N N 7  
G1C N3    C4     SING N N 8  
G1C C4    C5     DOUB Y N 9  
G1C C4    N9     SING Y N 10 
G1C C5    C6     SING N N 11 
G1C C5    N7     SING Y N 12 
G1C C6    O6     DOUB N N 13 
G1C N7    C8     DOUB Y N 14 
G1C C8    N9     SING Y N 15 
G1C C8    H8     SING N N 16 
G1C N9    "C1'"  SING N N 17 
G1C PA    O1A    SING N N 18 
G1C PA    O2A    DOUB N N 19 
G1C PA    O3A    SING N N 20 
G1C PA    "O5'"  SING N N 21 
G1C PB    O1B    SING N N 22 
G1C PB    O2B    DOUB N N 23 
G1C PB    O3A    SING N N 24 
G1C PB    C3B    SING N N 25 
G1C PG    O1G    SING N N 26 
G1C PG    O2G    SING N N 27 
G1C PG    C3B    SING N N 28 
G1C PG    O3G    DOUB N N 29 
G1C "C1'" "C2'"  SING N N 30 
G1C "C1'" "O4'"  SING N N 31 
G1C "C1'" "H1'"  SING N N 32 
G1C "C2'" "C3'"  SING N N 33 
G1C "C2'" "H2'"  SING N N 34 
G1C "C2'" "H2'A" SING N N 35 
G1C "C3'" "O3'"  SING N N 36 
G1C "C3'" "C4'"  SING N N 37 
G1C "C3'" "H3'"  SING N N 38 
G1C "O3'" "HO3'" SING N N 39 
G1C C3B   CL3B   SING N N 40 
G1C C3B   H3B    SING N N 41 
G1C "C4'" "O4'"  SING N N 42 
G1C "C4'" "C5'"  SING N N 43 
G1C "C4'" "H4'"  SING N N 44 
G1C "C5'" "O5'"  SING N N 45 
G1C "C5'" "H5'"  SING N N 46 
G1C "C5'" "H5'A" SING N N 47 
G1C O1A   H14    SING N N 48 
G1C O1B   H15    SING N N 49 
G1C O1G   H16    SING N N 50 
G1C O2G   H17    SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G1C SMILES           ACDLabs              11.02 "O=P(O)(O)C(Cl)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O" 
G1C SMILES_CANONICAL CACTVS               3.352 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)[C@@H](Cl)[P](O)(O)=O)O3" 
G1C SMILES           CACTVS               3.352 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)[CH](Cl)[P](O)(O)=O)O3" 
G1C SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)([C@H](P(=O)(O)O)Cl)O)O)N=C(NC2=O)N" 
G1C SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(C(P(=O)(O)O)Cl)O)O)N=C(NC2=O)N" 
G1C InChI            InChI                1.03  
"InChI=1S/C11H17ClN5O12P3/c12-10(30(20,21)22)31(23,24)29-32(25,26)27-2-5-4(18)1-6(28-5)17-3-14-7-8(17)15-11(13)16-9(7)19/h3-6,10,18H,1-2H2,(H,23,24)(H,25,26)(H2,20,21,22)(H3,13,15,16,19)/t4-,5+,6+,10-/m0/s1" 
G1C InChIKey         InChI                1.03  GBPRSSRXOIDBNV-KQQCLRPBSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G1C "SYSTEMATIC NAME" ACDLabs              11.02 "5'-O-[(R)-{[(S)-[(S)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine"                                                
G1C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(S)-[[[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]-chloro-methyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G1C "Create component"  2009-09-11 RCSB 
G1C "Modify descriptor" 2011-06-04 RCSB 
# 
