data_A1IGC
# 
_chem_comp.id                                    A1IGC 
_chem_comp.name                                  "swainsonine-configured alkyl indolizidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H29 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(1S,2R,8R,8aR)-3-heptyl-1,2,3,5,6,7,8,8a-octahydroindolizine-1,2,8-triol" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-27 
_chem_comp.pdbx_modified_date                    2024-10-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        271.396 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IGC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9FTQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IGC C10 C1  C 0 1 N N S N N N -45.800 14.345 -6.544  -3.059 -1.263 -0.054 C10 A1IGC 1  
A1IGC C14 C2  C 0 1 N N N N N N -48.059 13.617 -10.238 -1.506 2.721  0.058  C14 A1IGC 2  
A1IGC C8  C3  C 0 1 N N S N N N -48.233 14.029 -6.424  -0.786 -0.871 -0.910 C8  A1IGC 3  
A1IGC C9  C4  C 0 1 N N R N N N -46.958 14.112 -5.564  -1.854 -1.977 -0.725 C9  A1IGC 4  
A1IGC C11 C5  C 0 1 N N R N N N -46.467 14.532 -7.920  -2.818 0.208  -0.439 C11 A1IGC 5  
A1IGC C12 C6  C 0 1 N N R N N N -45.789 14.076 -9.203  -3.455 1.196  0.530  C12 A1IGC 6  
A1IGC C13 C7  C 0 1 N N N N N N -46.706 14.293 -10.401 -3.030 2.608  0.101  C13 A1IGC 7  
A1IGC C15 C8  C 0 1 N N N N N N -48.676 13.987 -8.895  -0.906 1.616  -0.825 C15 A1IGC 8  
A1IGC O2  O1  O 0 1 N N N N N N -44.992 13.188 -6.486  -3.027 -1.431 1.364  O2  A1IGC 9  
A1IGC O1  O2  O 0 1 N N N N N N -46.678 12.831 -5.010  -1.355 -3.012 0.123  O1  A1IGC 10 
A1IGC O3  O3  O 0 1 N N N N N N -44.603 14.824 -9.437  -4.878 1.079  0.475  O3  A1IGC 11 
A1IGC N1  N1  N 0 1 N N N N N N -47.709 13.731 -7.773  -1.343 0.334  -0.294 N1  A1IGC 12 
A1IGC H1  H1  H 0 1 N N N N N N -45.243 15.252 -6.266  -4.002 -1.623 -0.466 H1  A1IGC 13 
A1IGC H2  H2  H 0 1 N N N N N N -48.728 13.944 -11.047 -1.229 3.694  -0.347 H2  A1IGC 14 
A1IGC H3  H3  H 0 1 N N N N N N -47.928 12.526 -10.289 -1.111 2.628  1.069  H3  A1IGC 15 
A1IGC H6  H6  H 0 1 N N N N N N -47.025 14.912 -4.812  -2.146 -2.386 -1.692 H6  A1IGC 16 
A1IGC H7  H7  H 0 1 N N N N N N -46.738 15.592 -8.028  -3.129 0.400  -1.466 H7  A1IGC 17 
A1IGC H8  H8  H 0 1 N N N N N N -45.555 13.004 -9.122  -3.107 0.997  1.544  H8  A1IGC 18 
A1IGC H9  H9  H 0 1 N N N N N N -46.215 13.886 -11.297 -3.424 3.334  0.812  H9  A1IGC 19 
A1IGC H10 H10 H 0 1 N N N N N N -46.866 15.374 -10.530 -3.434 2.820  -0.889 H10 A1IGC 20 
A1IGC H11 H11 H 0 1 N N N N N N -48.944 15.054 -8.903  -1.258 1.731  -1.850 H11 A1IGC 21 
A1IGC H12 H12 H 0 1 N N N N N N -49.581 13.383 -8.736  0.183  1.674  -0.799 H12 A1IGC 22 
A1IGC H13 H13 H 0 1 N N N N N N -44.604 13.115 -5.622  -3.084 -2.353 1.652  H13 A1IGC 23 
A1IGC H14 H14 H 0 1 N N N N N N -47.354 12.602 -4.383  -1.997 -3.710 0.311  H14 A1IGC 24 
A1IGC H15 H15 H 0 1 N N N N N N -44.007 14.710 -8.706  -5.346 1.682  1.069  H15 A1IGC 25 
A1IGC C7  C9  C 0 1 N N N N N N ?       ?      ?       0.513  -1.270 -0.206 C7  A1IGC 26 
A1IGC C6  C10 C 0 1 N N N N N N ?       ?      ?       1.598  -0.237 -0.515 C6  A1IGC 27 
A1IGC C5  C11 C 0 1 N N N N N N ?       ?      ?       2.931  -0.707 0.072  C5  A1IGC 28 
A1IGC C4  C12 C 0 1 N N N N N N ?       ?      ?       4.017  0.326  -0.237 C4  A1IGC 29 
A1IGC C3  C13 C 0 1 N N N N N N ?       ?      ?       5.350  -0.144 0.349  C3  A1IGC 30 
A1IGC C2  C14 C 0 1 N N N N N N ?       ?      ?       6.435  0.889  0.040  C2  A1IGC 31 
A1IGC C1  C15 C 0 1 N N N N N N ?       ?      ?       7.768  0.419  0.626  C1  A1IGC 32 
A1IGC H5  H5  H 0 1 N N N N N N ?       ?      ?       0.345  -1.311 0.870  H5  A1IGC 33 
A1IGC H16 H16 H 0 1 N N N N N N ?       ?      ?       0.832  -2.250 -0.561 H16 A1IGC 34 
A1IGC H17 H17 H 0 1 N N N N N N ?       ?      ?       1.696  -0.124 -1.594 H17 A1IGC 35 
A1IGC H18 H18 H 0 1 N N N N N N ?       ?      ?       1.324  0.721  -0.072 H18 A1IGC 36 
A1IGC H19 H19 H 0 1 N N N N N N ?       ?      ?       2.834  -0.820 1.151  H19 A1IGC 37 
A1IGC H20 H20 H 0 1 N N N N N N ?       ?      ?       3.205  -1.665 -0.371 H20 A1IGC 38 
A1IGC H21 H21 H 0 1 N N N N N N ?       ?      ?       4.114  0.439  -1.317 H21 A1IGC 39 
A1IGC H22 H22 H 0 1 N N N N N N ?       ?      ?       3.743  1.284  0.205  H22 A1IGC 40 
A1IGC H23 H23 H 0 1 N N N N N N ?       ?      ?       5.252  -0.257 1.429  H23 A1IGC 41 
A1IGC H24 H24 H 0 1 N N N N N N ?       ?      ?       5.623  -1.102 -0.093 H24 A1IGC 42 
A1IGC H25 H25 H 0 1 N N N N N N ?       ?      ?       6.532  1.002  -1.039 H25 A1IGC 43 
A1IGC H26 H26 H 0 1 N N N N N N ?       ?      ?       6.161  1.847  0.483  H26 A1IGC 44 
A1IGC H27 H27 H 0 1 N N N N N N ?       ?      ?       7.670  0.306  1.706  H27 A1IGC 45 
A1IGC H28 H28 H 0 1 N N N N N N ?       ?      ?       8.042  -0.539 0.184  H28 A1IGC 46 
A1IGC H29 H29 H 0 1 N N N N N N ?       ?      ?       8.541  1.155  0.407  H29 A1IGC 47 
A1IGC H30 H30 H 0 1 N N N N N N -48.570 13.022 -6.136  -0.601 -0.701 -1.970 H30 A1IGC 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IGC C13 C14 SING N N 1  
A1IGC C13 C12 SING N N 2  
A1IGC C14 C15 SING N N 3  
A1IGC O3  C12 SING N N 4  
A1IGC C12 C11 SING N N 5  
A1IGC C15 N1  SING N N 6  
A1IGC C11 N1  SING N N 7  
A1IGC C11 C10 SING N N 8  
A1IGC N1  C8  SING N N 9  
A1IGC C10 O2  SING N N 10 
A1IGC C10 C9  SING N N 11 
A1IGC C8  C9  SING N N 12 
A1IGC C9  O1  SING N N 13 
A1IGC C10 H1  SING N N 14 
A1IGC C14 H2  SING N N 15 
A1IGC C14 H3  SING N N 16 
A1IGC C9  H6  SING N N 17 
A1IGC C11 H7  SING N N 18 
A1IGC C12 H8  SING N N 19 
A1IGC C13 H9  SING N N 20 
A1IGC C13 H10 SING N N 21 
A1IGC C15 H11 SING N N 22 
A1IGC C15 H12 SING N N 23 
A1IGC O2  H13 SING N N 24 
A1IGC O1  H14 SING N N 25 
A1IGC O3  H15 SING N N 26 
A1IGC C8  C7  SING N N 27 
A1IGC C7  C6  SING N N 28 
A1IGC C6  C5  SING N N 29 
A1IGC C5  C4  SING N N 30 
A1IGC C4  C3  SING N N 31 
A1IGC C3  C2  SING N N 32 
A1IGC C2  C1  SING N N 33 
A1IGC C7  H5  SING N N 34 
A1IGC C7  H16 SING N N 35 
A1IGC C6  H17 SING N N 36 
A1IGC C6  H18 SING N N 37 
A1IGC C5  H19 SING N N 38 
A1IGC C5  H20 SING N N 39 
A1IGC C4  H21 SING N N 40 
A1IGC C4  H22 SING N N 41 
A1IGC C3  H23 SING N N 42 
A1IGC C3  H24 SING N N 43 
A1IGC C2  H25 SING N N 44 
A1IGC C2  H26 SING N N 45 
A1IGC C1  H27 SING N N 46 
A1IGC C1  H28 SING N N 47 
A1IGC C1  H29 SING N N 48 
A1IGC C8  H30 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IGC InChI            InChI                1.06  "InChI=1S/C15H29NO3/c1-2-3-4-5-6-8-11-14(18)15(19)13-12(17)9-7-10-16(11)13/h11-15,17-19H,2-10H2,1H3/t11?,12-,13-,14-,15+/m1/s1" 
A1IGC InChIKey         InChI                1.06  WTMDVWSZYWIVEZ-CVFKAICRSA-N                                                                                                     
A1IGC SMILES_CANONICAL CACTVS               3.385 "CCCCCCC[C@H]1[C@@H](O)[C@@H](O)[C@H]2[C@H](O)CCCN12"                                                                           
A1IGC SMILES           CACTVS               3.385 "CCCCCCC[CH]1[CH](O)[CH](O)[CH]2[CH](O)CCCN12"                                                                                  
A1IGC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC1[C@H]([C@H]([C@@H]2N1CCC[C@H]2O)O)O"                                                                                  
A1IGC SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCC1C(C(C2N1CCCC2O)O)O"                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           A1IGC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{S},2~{R},8~{R},8~{a}~{R})-3-heptyl-1,2,3,5,6,7,8,8~{a}-octahydroindolizine-1,2,8-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IGC "Create component" 2024-06-27 PDBE 
A1IGC "Initial release"  2024-10-09 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      A1IGC 
_pdbx_chem_comp_synonyms.name         "(1S,2R,8R,8aR)-3-heptyl-1,2,3,5,6,7,8,8a-octahydroindolizine-1,2,8-triol" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
