data_5NC
# 
_chem_comp.id                                    5NC 
_chem_comp.name                                  "5-AZA-CYTIDINE-5'MONOPHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C8 H13 N4 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               DC 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        308.185 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     5NC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        10MH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5NC P      P    P 0 1 N N N -19.554 45.425 87.457 0.969  -0.059 -4.012 P      5NC 1  
5NC OP1    O1P  O 0 1 N N N -19.987 45.792 86.113 1.817  1.064  -3.556 OP1    5NC 2  
5NC OP2    O2P  O 0 1 N N N -18.164 45.216 87.695 1.887  -1.161 -4.743 OP2    5NC 3  
5NC OP3    O3P  O 0 1 N Y N -20.172 46.570 88.449 -0.136 0.488  -5.046 OP3    5NC 4  
5NC "O5'"  O5*  O 0 1 N N N -20.244 44.074 87.736 0.235  -0.726 -2.745 "O5'"  5NC 5  
5NC "C5'"  C5*  C 0 1 N N N -19.645 43.103 88.640 -0.559 0.296  -2.142 "C5'"  5NC 6  
5NC "C4'"  C4*  C 0 1 N N R -20.200 41.700 88.582 -1.288 -0.275 -0.924 "C4'"  5NC 7  
5NC "O4'"  O4*  O 0 1 N N N -19.659 41.011 87.477 -0.348 -0.646 0.108  "O4'"  5NC 8  
5NC "C3'"  C3*  C 0 1 N N S -19.750 40.916 89.743 -2.160 0.813  -0.249 "C3'"  5NC 9  
5NC "O3'"  O3*  O 0 1 N N N -20.664 40.979 90.896 -3.448 0.891  -0.864 "O3'"  5NC 10 
5NC "C2'"  C2*  C 0 1 N N N -19.845 39.478 89.159 -2.272 0.286  1.201  "C2'"  5NC 11 
5NC "C1'"  C1*  C 0 1 N N R -19.723 39.639 87.586 -1.078 -0.677 1.346  "C1'"  5NC 12 
5NC N1     N1   N 0 1 N N N -18.495 39.033 86.819 -0.215 -0.239 2.445  N1     5NC 13 
5NC C2     C2   C 0 1 N N N -18.543 38.846 85.406 0.011  -1.054 3.496  C2     5NC 14 
5NC O2     O2   O 0 1 N N N -19.548 39.333 84.856 -0.501 -2.160 3.537  O2     5NC 15 
5NC N3     N3   N 0 1 N N N -17.528 38.205 84.708 0.801  -0.642 4.491  N3     5NC 16 
5NC C4     C4   C 0 1 N N N -16.363 37.770 85.331 1.357  0.560  4.442  C4     5NC 17 
5NC N4     N4   N 0 1 N N N -15.343 37.265 84.618 2.168  0.979  5.467  N4     5NC 18 
5NC N5     N5   N 0 1 N N N -16.196 37.849 86.650 1.126  1.371  3.400  N5     5NC 19 
5NC C6     C6   C 0 1 N N N -17.280 38.538 87.465 0.359  0.982  2.413  C6     5NC 20 
5NC HOP2   2HOP H 0 0 N N N -17.882 44.977 88.570 2.308  -0.721 -5.494 HOP2   5NC 21 
5NC HOP3   3HOP H 0 0 N N N -19.890 46.331 89.324 -0.665 -0.272 -5.319 HOP3   5NC 22 
5NC "H5'"  1H5* H 0 1 N N N -18.541 43.077 88.485 -1.289 0.661  -2.864 "H5'"  5NC 23 
5NC "H5''" 2H5* H 0 0 N N N -19.694 43.483 89.686 0.083  1.118  -1.828 "H5''" 5NC 24 
5NC "H4'"  H4*  H 0 1 N N N -21.309 41.796 88.536 -1.898 -1.132 -1.211 "H4'"  5NC 25 
5NC "H3'"  H3*  H 0 1 N N N -18.762 41.265 90.124 -1.660 1.782  -0.273 "H3'"  5NC 26 
5NC "HO'3" 3HO* H 0 0 N N N -20.373 40.472 91.645 -3.969 1.516  -0.343 "HO'3" 5NC 27 
5NC "H2'"  1H2* H 0 1 N N N -19.100 38.770 89.593 -3.212 -0.246 1.342  "H2'"  5NC 28 
5NC "H2''" 2H2* H 0 0 N N N -20.758 38.925 89.480 -2.187 1.107  1.913  "H2''" 5NC 29 
5NC "H1'1" 1H1* H 0 0 N N N -20.559 39.073 87.114 -1.439 -1.688 1.538  "H1'1" 5NC 30 
5NC HN41   1HN4 H 0 0 N N N -14.488 36.946 85.074 2.575  1.858  5.434  HN41   5NC 31 
5NC HN42   2HN4 H 0 0 N N N -15.084 37.949 83.906 2.330  0.397  6.226  HN42   5NC 32 
5NC H6     H6   H 0 1 N N N -17.182 38.682 88.554 0.182  1.640  1.575  H6     5NC 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5NC P     OP1    DOUB N N 1  
5NC P     OP2    SING N N 2  
5NC P     OP3    SING N N 3  
5NC P     "O5'"  SING N N 4  
5NC OP2   HOP2   SING N N 5  
5NC OP3   HOP3   SING N N 6  
5NC "O5'" "C5'"  SING N N 7  
5NC "C5'" "C4'"  SING N N 8  
5NC "C5'" "H5'"  SING N N 9  
5NC "C5'" "H5''" SING N N 10 
5NC "C4'" "O4'"  SING N N 11 
5NC "C4'" "C3'"  SING N N 12 
5NC "C4'" "H4'"  SING N N 13 
5NC "O4'" "C1'"  SING N N 14 
5NC "C3'" "O3'"  SING N N 15 
5NC "C3'" "C2'"  SING N N 16 
5NC "C3'" "H3'"  SING N N 17 
5NC "O3'" "HO'3" SING N N 18 
5NC "C2'" "C1'"  SING N N 19 
5NC "C2'" "H2'"  SING N N 20 
5NC "C2'" "H2''" SING N N 21 
5NC "C1'" N1     SING N N 22 
5NC "C1'" "H1'1" SING N N 23 
5NC N1    C2     SING N N 24 
5NC N1    C6     SING N N 25 
5NC C2    O2     DOUB N N 26 
5NC C2    N3     SING N N 27 
5NC N3    C4     DOUB N N 28 
5NC C4    N4     SING N N 29 
5NC C4    N5     SING N N 30 
5NC N4    HN41   SING N N 31 
5NC N4    HN42   SING N N 32 
5NC N5    C6     DOUB N N 33 
5NC C6    H6     SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5NC SMILES           ACDLabs              10.04 "O=C1N=C(N=CN1C2OC(C(O)C2)COP(=O)(O)O)N"                                                                                               
5NC SMILES_CANONICAL CACTVS               3.341 "NC1=NC(=O)N(C=N1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2"                                                                              
5NC SMILES           CACTVS               3.341 "NC1=NC(=O)N(C=N1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2"                                                                                  
5NC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=NC(=NC2=O)N)COP(=O)(O)O)O"                                                                                  
5NC SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=NC(=NC2=O)N)COP(=O)(O)O)O"                                                                                               
5NC InChI            InChI                1.03  "InChI=1S/C8H13N4O7P/c9-7-10-3-12(8(14)11-7)6-1-4(13)5(19-6)2-18-20(15,16)17/h3-6,13H,1-2H2,(H2,9,11,14)(H2,15,16,17)/t4-,5+,6+/m0/s1" 
5NC InChIKey         InChI                1.03  JQHZISUSXMJEPR-KVQBGUIXSA-N                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5NC "SYSTEMATIC NAME" ACDLabs              10.04 "4-amino-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1,3,5-triazin-2(1H)-one"            
5NC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(4-amino-2-oxo-1,3,5-triazin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5NC "Create component"  1999-07-08 RCSB 
5NC "Modify descriptor" 2011-06-04 RCSB 
# 
