data_Z8B
# 
_chem_comp.id                                    Z8B 
_chem_comp.name                                  "5'-azido-8-bromo-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H11 Br N8 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-03-07 
_chem_comp.pdbx_modified_date                    2011-08-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        371.150 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Z8B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3QYZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Z8B N1     N1   N  0  1 Y N N -18.054 11.651 41.016 -4.941 -0.874 0.979  N1   Z8B 1  
Z8B C2     C2   C  0  1 Y N N -18.395 12.857 41.540 -4.126 -1.898 1.158  C2   Z8B 2  
Z8B N3     N3   N  0  1 Y N N -17.514 13.793 41.726 -2.834 -1.822 0.919  N3   Z8B 3  
Z8B C4     C4   C  0  1 Y N N -16.115 13.577 41.383 -2.291 -0.691 0.481  C4   Z8B 4  
Z8B C5     C5   C  0  1 Y N N -15.761 12.385 40.845 -3.117 0.428  0.275  C5   Z8B 5  
Z8B C6     C6   C  0  1 Y N N -16.741 11.379 40.655 -4.490 0.297  0.544  C6   Z8B 6  
Z8B N6     N6   N  0  1 N N N -16.372 10.138 40.098 -5.352 1.364  0.359  N6   Z8B 7  
Z8B N7     N7   N  0  1 Y N N -14.412 12.421 40.606 -2.323 1.434  -0.165 N7   Z8B 8  
Z8B C8     C8   C  0  1 Y N N -13.974 13.619 40.988 -1.093 1.015  -0.241 C8   Z8B 9  
Z8B BR8    BR8  BR 0  0 N N N -12.116 14.176 40.857 0.378  2.061  -0.806 BR8  Z8B 10 
Z8B N9     N9   N  0  1 Y N N -14.966 14.346 41.460 -1.021 -0.290 0.148  N9   Z8B 11 
Z8B "C1'"  C1*  C  0  1 N N R -14.900 15.725 41.988 0.189  -1.115 0.200  C1*  Z8B 12 
Z8B "C2'"  C2*  C  0  1 N N R -14.082 15.927 43.159 0.623  -1.537 -1.227 C2*  Z8B 13 
Z8B "O2'"  O2*  O  0  1 N N N -14.740 15.445 44.399 -0.052 -2.729 -1.634 O2*  Z8B 14 
Z8B "C3'"  C3*  C  0  1 N N S -13.907 17.332 43.194 2.138  -1.796 -1.041 C3*  Z8B 15 
Z8B "O3'"  O3*  O  0  1 N N N -14.950 17.914 43.795 2.388  -3.191 -0.859 O3*  Z8B 16 
Z8B "C4'"  C4*  C  0  1 N N R -13.917 17.703 41.778 2.502  -1.012 0.234  C4*  Z8B 17 
Z8B "C5'"  C5*  C  0  1 N N N -12.499 18.068 41.340 3.593  0.014  -0.079 C5*  Z8B 18 
Z8B "O5'"  O5*  O  0  1 N N N -14.359 16.607 41.058 1.310  -0.342 0.678  O5*  Z8B 19 
Z8B N51    N51  N  0  1 N N N -12.337 18.463 39.851 4.016  0.671  1.160  N51  Z8B 20 
Z8B N52    N52  N  1  1 N N N -11.262 17.893 39.344 5.087  0.600  1.497  N52  Z8B 21 
Z8B N53    N53  N  -1 1 N N N -10.661 18.768 38.485 6.156  0.528  1.833  N53  Z8B 22 
Z8B H2     H2   H  0  1 N N N -19.425 13.042 41.809 -4.535 -2.832 1.513  H2   Z8B 23 
Z8B H1N6   H1N6 H  0  0 N N N -17.179 9.552  40.025 -5.010 2.215  0.041  H1N6 Z8B 24 
Z8B H2N6   H2N6 H  0  0 N N N -15.983 10.284 39.188 -6.298 1.262  0.548  H2N6 Z8B 25 
Z8B "H1'"  H1*  H  0  1 N N N -15.956 15.909 42.236 0.028  -1.991 0.827  H1*  Z8B 26 
Z8B "H2'"  H2*  H  0  1 N N N -13.138 15.365 43.107 0.451  -0.731 -1.940 H2*  Z8B 27 
Z8B "HO2'" HO2* H  0  0 N N N -14.168 15.598 45.142 0.187  -3.033 -2.520 HO2* Z8B 28 
Z8B "H3'"  H3*  H  0  1 N N N -12.999 17.635 43.735 2.698  -1.418 -1.897 H3*  Z8B 29 
Z8B "HO3'" HO3* H  0  0 N N N -14.956 17.681 44.716 3.322  -3.411 -0.738 HO3* Z8B 30 
Z8B "H4'"  H4*  H  0  1 N N N -14.576 18.567 41.606 2.850  -1.699 1.005  H4*  Z8B 31 
Z8B "H15'" H15* H  0  0 N N N -11.862 17.189 41.519 4.446  -0.490 -0.533 H15* Z8B 32 
Z8B "H25'" H25* H  0  0 N N N -12.178 18.928 41.946 3.202  0.760  -0.771 H25* Z8B 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Z8B N53   N52    DOUB N N 1  
Z8B N52   N51    DOUB N N 2  
Z8B N51   "C5'"  SING N N 3  
Z8B N6    C6     SING N N 4  
Z8B N7    C5     SING Y N 5  
Z8B N7    C8     DOUB Y N 6  
Z8B C6    C5     DOUB Y N 7  
Z8B C6    N1     SING Y N 8  
Z8B C5    C4     SING Y N 9  
Z8B BR8   C8     SING N N 10 
Z8B C8    N9     SING Y N 11 
Z8B N1    C2     DOUB Y N 12 
Z8B "O5'" "C4'"  SING N N 13 
Z8B "O5'" "C1'"  SING N N 14 
Z8B "C5'" "C4'"  SING N N 15 
Z8B C4    N9     SING Y N 16 
Z8B C4    N3     DOUB Y N 17 
Z8B N9    "C1'"  SING N N 18 
Z8B C2    N3     SING Y N 19 
Z8B "C4'" "C3'"  SING N N 20 
Z8B "C1'" "C2'"  SING N N 21 
Z8B "C2'" "C3'"  SING N N 22 
Z8B "C2'" "O2'"  SING N N 23 
Z8B "C3'" "O3'"  SING N N 24 
Z8B C2    H2     SING N N 25 
Z8B N6    H1N6   SING N N 26 
Z8B N6    H2N6   SING N N 27 
Z8B "C1'" "H1'"  SING N N 28 
Z8B "C2'" "H2'"  SING N N 29 
Z8B "O2'" "HO2'" SING N N 30 
Z8B "C3'" "H3'"  SING N N 31 
Z8B "O3'" "HO3'" SING N N 32 
Z8B "C4'" "H4'"  SING N N 33 
Z8B "C5'" "H15'" SING N N 34 
Z8B "C5'" "H25'" SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Z8B SMILES           ACDLabs              12.01 "Brc2nc1c(ncnc1n2C3OC(C(O)C3O)C\N=[N+]=[N-])N"                                                                                                  
Z8B SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n([C@@H]3O[C@H](CN=[N+]=[N-])[C@@H](O)[C@H]3O)c(Br)nc12"                                                                               
Z8B SMILES           CACTVS               3.370 "Nc1ncnc2n([CH]3O[CH](CN=[N+]=[N-])[CH](O)[CH]3O)c(Br)nc12"                                                                                     
Z8B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(c(n2)Br)[C@H]3[C@@H]([C@@H]([C@H](O3)CN=[N+]=[N-])O)O)N"                                                                         
Z8B SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(c(n2)Br)C3C(C(C(O3)CN=[N+]=[N-])O)O)N"                                                                                           
Z8B InChI            InChI                1.03  "InChI=1S/C10H11BrN8O3/c11-10-17-4-7(12)14-2-15-8(4)19(10)9-6(21)5(20)3(22-9)1-16-18-13/h2-3,5-6,9,20-21H,1H2,(H2,12,14,15)/t3-,5-,6-,9-/m1/s1" 
Z8B InChIKey         InChI                1.03  USVISQHKGJAQDS-UUOKFMHZSA-N                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Z8B "SYSTEMATIC NAME" ACDLabs              12.01 "5'-azido-8-bromo-5'-deoxyadenosine"                                            
Z8B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,3R,4S,5R)-2-(6-azanyl-8-bromo-purin-9-yl)-5-(azidomethyl)oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Z8B "Create component"     2011-03-07 RCSB 
Z8B "Modify aromatic_flag" 2011-06-04 RCSB 
Z8B "Modify descriptor"    2011-06-04 RCSB 
# 
