data_YQB
# 
_chem_comp.id                                    YQB 
_chem_comp.name                                  "(3S)-9-[(1R)-1-(2-carboxyanilino)ethyl]-3-cyano-7-methyl-4-oxo-2-(piperidin-1-yl)-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H25 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-08 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        431.487 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YQB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V8U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YQB C1  C1  C 0 1 N N N N N N -7.644  21.067 -59.696 0.954  1.402  2.445  C1  YQB 1  
YQB C10 C2  C 0 1 N N N N N N -8.712  18.348 -55.660 2.802  -0.993 -1.662 C10 YQB 2  
YQB C13 C3  C 0 1 N N N N N N -6.769  18.893 -60.493 -0.238 2.307  0.468  C13 YQB 3  
YQB C14 C4  C 0 1 N N N N N N -7.836  18.061 -60.668 -0.514 3.607  0.166  C14 YQB 4  
YQB C15 C5  C 0 1 N N N N N N -7.887  17.139 -61.740 -1.775 3.947  -0.342 C15 YQB 5  
YQB C16 C6  C 0 1 N N N N N N -6.851  17.064 -62.622 -2.711 2.989  -0.530 C16 YQB 6  
YQB C18 C7  C 0 1 N N N N N N -4.671  17.785 -63.409 -3.402 0.754  -0.431 C18 YQB 7  
YQB C2  C8  C 0 1 N N R N N N -6.773  19.863 -59.306 1.112  1.925  1.016  C2  YQB 8  
YQB C20 C9  C 0 1 N N N N N N -3.547  18.638 -63.255 -3.118 -0.594 -0.118 C20 YQB 9  
YQB C21 C10 C 0 1 N N N N N N -3.546  19.533 -62.205 -1.845 -0.908 0.406  C21 YQB 10 
YQB C23 C11 C 0 1 N N N N N N -5.648  18.837 -61.411 -1.226 1.325  0.271  C23 YQB 11 
YQB C25 C12 C 0 1 N N N N N N -1.074  20.021 -61.975 -1.961 -3.318 -0.138 C25 YQB 12 
YQB C26 C13 C 0 1 N N N N N N -0.414  20.036 -60.591 -0.737 -4.161 -0.510 C26 YQB 13 
YQB C27 C14 C 0 1 N N N N N N -0.578  21.372 -59.866 -0.019 -4.602 0.768  C27 YQB 14 
YQB C28 C15 C 0 1 N N N N N N -2.078  21.653 -59.781 0.459  -3.369 1.538  C28 YQB 15 
YQB C29 C16 C 0 1 N N N N N N -2.741  21.675 -61.164 -0.752 -2.518 1.933  C29 YQB 16 
YQB C30 C17 C 0 1 N N N N N N -2.523  18.465 -64.246 -4.103 -1.615 -0.314 C30 YQB 17 
YQB C32 C18 C 0 1 N N N N N N -9.111  16.258 -61.869 -2.089 5.381  -0.679 C32 YQB 18 
YQB C4  C19 C 0 1 Y N N N N N -6.895  18.154 -57.419 3.081  0.722  0.129  C4  YQB 19 
YQB C5  C20 C 0 1 Y N N N N N -5.741  17.494 -57.867 3.898  1.467  0.970  C5  YQB 20 
YQB C6  C21 C 0 1 Y N N N N N -5.210  16.448 -57.135 5.267  1.304  0.925  C6  YQB 21 
YQB C7  C22 C 0 1 Y N N N N N -5.810  16.033 -55.950 5.839  0.400  0.044  C7  YQB 22 
YQB C8  C23 C 0 1 Y N N N N N -6.950  16.673 -55.498 5.045  -0.348 -0.798 C8  YQB 23 
YQB C9  C24 C 0 1 Y N N N N N -7.515  17.738 -56.213 3.656  -0.196 -0.765 C9  YQB 24 
YQB N17 N1  N 0 1 N N N N N N -5.731  17.900 -62.473 -2.445 1.686  -0.231 N17 YQB 25 
YQB N22 N2  N 0 1 N N N N N N -4.573  19.605 -61.312 -0.950 0.056  0.573  N22 YQB 26 
YQB N24 N3  N 0 1 N N N N N N -2.505  20.430 -61.952 -1.529 -2.210 0.725  N24 YQB 27 
YQB N3  N4  N 0 1 N N N N N N -7.438  19.217 -58.159 1.702  0.879  0.176  N3  YQB 28 
YQB N31 N5  N 0 1 N N N N N N -1.701  18.337 -65.029 -4.884 -2.425 -0.469 N31 YQB 29 
YQB O11 O1  O 0 1 N N N N N N -9.635  17.701 -55.188 3.361  -1.787 -2.596 O11 YQB 30 
YQB O12 O2  O 0 1 N N N N N N -8.838  19.687 -55.646 1.592  -0.934 -1.560 O12 YQB 31 
YQB O19 O3  O 0 1 N N N N N N -4.808  16.948 -64.323 -4.488 1.068  -0.885 O19 YQB 32 
YQB H1  H1  H 0 1 N N N N N N -7.670  21.786 -58.864 0.516  2.180  3.070  H1  YQB 33 
YQB H2  H2  H 0 1 N N N N N N -7.220  21.552 -60.588 0.303  0.528  2.442  H2  YQB 34 
YQB H3  H3  H 0 1 N N N N N N -8.666  20.724 -59.916 1.931  1.126  2.841  H3  YQB 35 
YQB H4  H4  H 0 1 N N N N N N -8.661  18.107 -59.972 0.235  4.371  0.317  H4  YQB 36 
YQB H5  H5  H 0 1 N N N N N N -6.891  16.359 -63.439 -3.679 3.259  -0.926 H5  YQB 37 
YQB H6  H6  H 0 1 N N N N N N -5.750  20.183 -59.057 1.764  2.799  1.018  H6  YQB 38 
YQB H8  H8  H 0 1 N N N N N N -1.009  19.001 -62.381 -2.419 -2.919 -1.043 H8  YQB 39 
YQB H9  H9  H 0 1 N N N N N N -0.524  20.712 -62.631 -2.682 -3.937 0.396  H9  YQB 40 
YQB H10 H10 H 0 1 N N N N N N -0.870  19.245 -59.977 -1.057 -5.039 -1.070 H10 YQB 41 
YQB H11 H11 H 0 1 N N N N N N 0.660   19.833 -60.713 -0.058 -3.566 -1.122 H11 YQB 42 
YQB H12 H12 H 0 1 N N N N N N -0.148  21.309 -58.856 -0.706 -5.176 1.390  H12 YQB 43 
YQB H13 H13 H 0 1 N N N N N N -0.075  22.172 -60.429 0.838  -5.222 0.507  H13 YQB 44 
YQB H14 H14 H 0 1 N N N N N N -2.229  22.631 -59.300 0.990  -3.685 2.436  H14 YQB 45 
YQB H15 H15 H 0 1 N N N N N N -2.552  20.868 -59.173 1.126  -2.782 0.908  H15 YQB 46 
YQB H16 H16 H 0 1 N N N N N N -2.339  22.528 -61.730 -1.374 -3.072 2.636  H16 YQB 47 
YQB H17 H17 H 0 1 N N N N N N -3.825  21.803 -61.029 -0.412 -1.592 2.397  H17 YQB 48 
YQB H18 H18 H 0 1 N N N N N N -9.815  16.486 -61.055 -1.820 5.578  -1.717 H18 YQB 49 
YQB H19 H19 H 0 1 N N N N N N -9.597  16.445 -62.838 -3.155 5.562  -0.540 H19 YQB 50 
YQB H20 H20 H 0 1 N N N N N N -8.810  15.202 -61.808 -1.520 6.041  -0.025 H20 YQB 51 
YQB H21 H21 H 0 1 N N N N N N -5.266  17.804 -58.786 3.461  2.174  1.659  H21 YQB 52 
YQB H22 H22 H 0 1 N N N N N N -4.320  15.948 -57.487 5.898  1.886  1.581  H22 YQB 53 
YQB H23 H23 H 0 1 N N N N N N -5.387  15.215 -55.386 6.912  0.282  0.016  H23 YQB 54 
YQB H24 H24 H 0 1 N N N N N N -7.413  16.346 -54.578 5.496  -1.052 -1.482 H24 YQB 55 
YQB H25 H25 H 0 1 N N N N N N -7.603  19.948 -57.497 1.129  0.297  -0.348 H25 YQB 56 
YQB H26 H26 H 0 1 N N N N N N -10.312 18.292 -54.880 2.760  -2.291 -3.161 H26 YQB 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YQB N31 C30 TRIP N N 1  
YQB O19 C18 DOUB N N 2  
YQB C30 C20 SING N N 3  
YQB C18 C20 SING N N 4  
YQB C18 N17 SING N N 5  
YQB C20 C21 DOUB N N 6  
YQB C16 N17 SING N N 7  
YQB C16 C15 DOUB N N 8  
YQB N17 C23 SING N N 9  
YQB C21 N24 SING N N 10 
YQB C21 N22 SING N N 11 
YQB C25 N24 SING N N 12 
YQB C25 C26 SING N N 13 
YQB N24 C29 SING N N 14 
YQB C32 C15 SING N N 15 
YQB C15 C14 SING N N 16 
YQB C23 N22 DOUB N N 17 
YQB C23 C13 SING N N 18 
YQB C29 C28 SING N N 19 
YQB C14 C13 DOUB N N 20 
YQB C26 C27 SING N N 21 
YQB C13 C2  SING N N 22 
YQB C27 C28 SING N N 23 
YQB C1  C2  SING N N 24 
YQB C2  N3  SING N N 25 
YQB N3  C4  SING N N 26 
YQB C5  C4  DOUB Y N 27 
YQB C5  C6  SING Y N 28 
YQB C4  C9  SING Y N 29 
YQB C6  C7  DOUB Y N 30 
YQB C9  C10 SING N N 31 
YQB C9  C8  DOUB Y N 32 
YQB C7  C8  SING Y N 33 
YQB C10 O12 DOUB N N 34 
YQB C10 O11 SING N N 35 
YQB C1  H1  SING N N 36 
YQB C1  H2  SING N N 37 
YQB C1  H3  SING N N 38 
YQB C14 H4  SING N N 39 
YQB C16 H5  SING N N 40 
YQB C2  H6  SING N N 41 
YQB C25 H8  SING N N 42 
YQB C25 H9  SING N N 43 
YQB C26 H10 SING N N 44 
YQB C26 H11 SING N N 45 
YQB C27 H12 SING N N 46 
YQB C27 H13 SING N N 47 
YQB C28 H14 SING N N 48 
YQB C28 H15 SING N N 49 
YQB C29 H16 SING N N 50 
YQB C29 H17 SING N N 51 
YQB C32 H18 SING N N 52 
YQB C32 H19 SING N N 53 
YQB C32 H20 SING N N 54 
YQB C5  H21 SING N N 55 
YQB C6  H22 SING N N 56 
YQB C7  H23 SING N N 57 
YQB C8  H24 SING N N 58 
YQB N3  H25 SING N N 59 
YQB O11 H26 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YQB SMILES           ACDLabs              12.01 "O=C(O)c1ccccc1NC(C)C1=CC(C)=CN2C1=NC(=C(C#N)C2=O)N1CCCCC1"                                                                                                                              
YQB InChI            InChI                1.06  "InChI=1S/C24H25N5O3/c1-15-12-18(16(2)26-20-9-5-4-8-17(20)24(31)32)22-27-21(28-10-6-3-7-11-28)19(13-25)23(30)29(22)14-15/h4-5,8-9,12,14,16,26H,3,6-7,10-11H2,1-2H3,(H,31,32)/t16-/m1/s1" 
YQB InChIKey         InChI                1.06  KKORABQVCKPBGA-MRXNPFEDSA-N                                                                                                                                                              
YQB SMILES_CANONICAL CACTVS               3.385 "C[C@@H](Nc1ccccc1C(O)=O)C2=CC(=CN3C(=O)C(=C(N=C23)N4CCCCC4)C#N)C"                                                                                                                       
YQB SMILES           CACTVS               3.385 "C[CH](Nc1ccccc1C(O)=O)C2=CC(=CN3C(=O)C(=C(N=C23)N4CCCCC4)C#N)C"                                                                                                                         
YQB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CN2C(=NC(=C(C2=O)C#N)N3CCCCC3)C(=C1)[C@@H](C)Nc4ccccc4C(=O)O"                                                                                                                       
YQB SMILES           "OpenEye OEToolkits" 2.0.7 "CC1=CN2C(=NC(=C(C2=O)C#N)N3CCCCC3)C(=C1)C(C)Nc4ccccc4C(=O)O"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YQB "SYSTEMATIC NAME" ACDLabs              12.01 "2-({(1R)-1-[(5S)-3-cyano-7-methyl-4-oxo-2-(piperidin-1-yl)-4H-pyrido[1,2-a]pyrimidin-9-yl]ethyl}amino)benzoic acid"    
YQB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(1~{R})-1-(3-cyano-7-methyl-4-oxidanylidene-2-piperidin-1-yl-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YQB "Create component"   2023-12-08 RCSB 
YQB "Modify value order" 2024-03-08 RCSB 
YQB "Initial release"    2024-03-20 RCSB 
# 
