data_Y1B
# 
_chem_comp.id                                    Y1B 
_chem_comp.name                                  "3-fluoro-4-{[1-(3-{2-[(5-methyl-2H-tetrazol-2-yl)methyl]-4-(trifluoromethyl)phenyl}propanoyl)piperidin-4-yl]sulfanyl}benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H25 F4 N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        551.556 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y1B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G7Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y1B C13 C1  C 0 1 N N N N N N -15.174 11.203 48.582 2.838  3.081  -1.102 C13 Y1B 1  
Y1B C16 C2  C 0 1 N N N N N N -14.380 7.936  47.714 -0.513 2.123  -0.545 C16 Y1B 2  
Y1B C17 C3  C 0 1 N N N N N N -13.353 7.204  46.855 -1.317 0.851  -0.463 C17 Y1B 3  
Y1B C18 C4  C 0 1 N N N N N N -14.071 6.220  45.948 -2.752 1.125  -0.916 C18 Y1B 4  
Y1B C19 C5  C 0 1 Y N N N N N -13.075 5.367  45.207 -3.556 -0.148 -0.834 C19 Y1B 5  
Y1B C20 C6  C 0 1 Y N N N N N -12.788 4.143  45.728 -3.705 -0.945 -1.953 C20 Y1B 6  
Y1B C21 C7  C 0 1 Y N N N N N -11.896 3.298  45.124 -4.442 -2.112 -1.878 C21 Y1B 7  
Y1B C22 C8  C 0 1 Y N N N N N -11.260 3.699  44.000 -5.030 -2.482 -0.683 C22 Y1B 8  
Y1B C23 C9  C 0 1 N N N N N N -10.277 2.778  43.275 -5.834 -3.753 -0.601 C23 Y1B 9  
Y1B C27 C10 C 0 1 Y N N N N N -11.522 4.935  43.452 -4.880 -1.685 0.437  C27 Y1B 10 
Y1B C28 C11 C 0 1 Y N N N N N -12.414 5.777  44.096 -4.140 -0.520 0.363  C28 Y1B 11 
Y1B F1  F1  F 0 1 N N N N N N -12.563 13.785 45.367 7.607  0.167  -2.196 F1  Y1B 12 
Y1B C2  C12 C 0 1 Y N N N N N -13.816 13.841 45.140 7.137  -0.174 -0.976 C2  Y1B 13 
Y1B C3  C13 C 0 1 Y N N N N N -14.743 13.786 46.176 5.964  0.405  -0.494 C3  Y1B 14 
Y1B C4  C14 C 0 1 Y N N N N N -16.057 13.825 45.733 5.477  0.055  0.763  C4  Y1B 15 
Y1B C5  C15 C 0 1 Y N N N N N -16.385 13.919 44.353 6.153  -0.863 1.534  C5  Y1B 16 
Y1B C6  C16 C 0 1 Y N N N N N -15.392 13.978 43.412 7.330  -1.446 1.054  C6  Y1B 17 
Y1B C7  C17 C 0 1 Y N N N N N -14.104 13.952 43.804 7.814  -1.099 -0.212 C7  Y1B 18 
Y1B C8  C18 C 0 1 N N N N N N -15.700 14.092 41.982 8.055  -2.430 1.877  C8  Y1B 19 
Y1B O9  O1  O 0 1 N N N N N N -16.611 13.596 41.378 7.631  -2.734 2.974  O9  Y1B 20 
Y1B O10 O2  O 0 1 N N N N N N -14.827 14.867 41.322 9.189  -2.991 1.413  O10 Y1B 21 
Y1B S11 S1  S 0 1 N N N N N N -14.269 13.670 47.879 5.095  1.581  -1.476 S11 Y1B 22 
Y1B C12 C19 C 0 1 N N N N N N -13.857 11.970 48.500 3.587  1.883  -0.514 C12 Y1B 23 
Y1B C14 C20 C 0 1 N N N N N N -14.982 9.824  49.158 1.584  3.355  -0.267 C14 Y1B 24 
Y1B N15 N1  N 0 1 N N N N N N -14.019 9.106  48.329 0.788  2.123  -0.192 N15 Y1B 25 
Y1B F24 F2  F 0 1 N N N N N N -10.855 1.736  42.728 -5.841 -4.382 -1.851 F24 Y1B 26 
Y1B F25 F3  F 0 1 N N N N N N -9.620  3.362  42.285 -5.261 -4.607 0.347  F25 Y1B 27 
Y1B F26 F4  F 0 1 N N N N N N -9.376  2.244  44.020 -7.147 -3.452 -0.223 F26 Y1B 28 
Y1B C29 C21 C 0 1 N N N N N N -12.689 7.098  43.479 -3.973 0.346  1.585  C29 Y1B 29 
Y1B N30 N2  N 0 1 Y N N N N N -11.575 8.033  43.522 -4.990 1.400  1.579  N30 Y1B 30 
Y1B N31 N3  N 0 1 Y N N N N N -10.725 8.323  42.524 -6.160 1.313  2.109  N31 Y1B 31 
Y1B N32 N4  N 0 1 Y N N N N N -9.934  9.235  42.952 -6.786 2.424  1.916  N32 Y1B 32 
Y1B C33 C22 C 0 1 Y N N N N N -10.294 9.553  44.277 -5.968 3.229  1.239  C33 Y1B 33 
Y1B C34 C23 C 0 1 N N N N N N -9.644  10.548 45.140 -6.265 4.635  0.785  C34 Y1B 34 
Y1B N35 N5  N 0 1 Y N N N N N -11.326 8.784  44.624 -4.854 2.566  1.047  N35 Y1B 35 
Y1B O36 O3  O 0 1 N N N N N N -15.475 7.541  47.886 -1.037 3.148  -0.928 O36 Y1B 36 
Y1B C37 C24 C 0 1 N N N N N N -12.707 9.718  48.181 1.436  0.890  0.275  C37 Y1B 37 
Y1B C38 C25 C 0 1 N N N N N N -12.864 11.165 47.651 2.692  0.644  -0.567 C38 Y1B 38 
Y1B H44 H1  H 0 1 N N N N N N -15.873 11.762 49.222 3.485  3.959  -1.086 H44 Y1B 39 
Y1B H45 H2  H 0 1 N N N N N N -15.596 11.111 47.570 2.550  2.861  -2.130 H45 Y1B 40 
Y1B H49 H3  H 0 1 N N N N N N -12.799 7.932  46.243 -0.869 0.096  -1.109 H49 Y1B 41 
Y1B H48 H4  H 0 1 N N N N N N -12.651 6.661  47.504 -1.323 0.491  0.566  H48 Y1B 42 
Y1B H50 H5  H 0 1 N N N N N N -14.720 5.573  46.556 -3.200 1.880  -0.270 H50 Y1B 43 
Y1B H51 H6  H 0 1 N N N N N N -14.683 6.776  45.222 -2.746 1.485  -1.945 H51 Y1B 44 
Y1B H52 H7  H 0 1 N N N N N N -13.276 3.831  46.640 -3.245 -0.656 -2.887 H52 Y1B 45 
Y1B H53 H8  H 0 1 N N N N N N -11.702 2.321  45.541 -4.559 -2.734 -2.753 H53 Y1B 46 
Y1B H54 H9  H 0 1 N N N N N N -11.040 5.243  42.536 -5.340 -1.974 1.371  H54 Y1B 47 
Y1B H39 H10 H 0 1 N N N N N N -16.855 13.783 46.459 4.568  0.506  1.134  H39 Y1B 48 
Y1B H40 H11 H 0 1 N N N N N N -17.420 13.944 44.046 5.775  -1.133 2.509  H40 Y1B 49 
Y1B H41 H12 H 0 1 N N N N N N -13.309 14.018 43.076 8.720  -1.551 -0.587 H41 Y1B 50 
Y1B H42 H13 H 0 1 N N N N N N -15.074 14.914 40.406 9.630  -3.631 1.990  H42 Y1B 51 
Y1B H43 H14 H 0 1 N N N N N N -13.447 12.108 49.511 3.854  2.095  0.521  H43 Y1B 52 
Y1B H46 H15 H 0 1 N N N N N N -14.601 9.901  50.187 1.874  3.664  0.738  H46 Y1B 53 
Y1B H47 H16 H 0 1 N N N N N N -15.942 9.287  49.162 0.996  4.142  -0.738 H47 Y1B 54 
Y1B H56 H17 H 0 1 N N N N N N -12.959 6.934  42.425 -4.088 -0.264 2.481  H56 Y1B 55 
Y1B H55 H18 H 0 1 N N N N N N -13.539 7.553  44.008 -2.981 0.797  1.577  H55 Y1B 56 
Y1B H57 H19 H 0 1 N N N N N N -8.816  11.023 44.594 -5.964 5.339  1.562  H57 Y1B 57 
Y1B H59 H20 H 0 1 N N N N N N -10.377 11.314 45.432 -5.713 4.846  -0.130 H59 Y1B 58 
Y1B H58 H21 H 0 1 N N N N N N -9.253  10.052 46.041 -7.334 4.738  0.597  H58 Y1B 59 
Y1B H60 H22 H 0 1 N N N N N N -12.201 9.739  49.157 1.714  0.998  1.323  H60 Y1B 60 
Y1B H61 H23 H 0 1 N N N N N N -12.108 9.131  47.470 0.750  0.050  0.161  H61 Y1B 61 
Y1B H63 H24 H 0 1 N N N N N N -13.228 11.128 46.614 2.405  0.446  -1.600 H63 Y1B 62 
Y1B H62 H25 H 0 1 N N N N N N -11.884 11.664 47.678 3.234  -0.214 -0.169 H62 Y1B 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y1B F1  C2  SING N N 1  
Y1B C2  C3  DOUB Y N 2  
Y1B C2  C7  SING Y N 3  
Y1B C3  C4  SING Y N 4  
Y1B C3  S11 SING N N 5  
Y1B C4  C5  DOUB Y N 6  
Y1B C5  C6  SING Y N 7  
Y1B C6  C7  DOUB Y N 8  
Y1B C6  C8  SING N N 9  
Y1B C8  O9  DOUB N N 10 
Y1B C8  O10 SING N N 11 
Y1B S11 C12 SING N N 12 
Y1B C12 C13 SING N N 13 
Y1B C12 C38 SING N N 14 
Y1B C13 C14 SING N N 15 
Y1B C14 N15 SING N N 16 
Y1B N15 C16 SING N N 17 
Y1B N15 C37 SING N N 18 
Y1B C16 C17 SING N N 19 
Y1B C16 O36 DOUB N N 20 
Y1B C17 C18 SING N N 21 
Y1B C18 C19 SING N N 22 
Y1B C19 C20 DOUB Y N 23 
Y1B C19 C28 SING Y N 24 
Y1B C20 C21 SING Y N 25 
Y1B C21 C22 DOUB Y N 26 
Y1B C22 C23 SING N N 27 
Y1B C22 C27 SING Y N 28 
Y1B C23 F24 SING N N 29 
Y1B C23 F25 SING N N 30 
Y1B C23 F26 SING N N 31 
Y1B C27 C28 DOUB Y N 32 
Y1B C28 C29 SING N N 33 
Y1B C29 N30 SING N N 34 
Y1B N30 N31 SING Y N 35 
Y1B N30 N35 SING Y N 36 
Y1B N31 N32 DOUB Y N 37 
Y1B N32 C33 SING Y N 38 
Y1B C33 C34 SING N N 39 
Y1B C33 N35 DOUB Y N 40 
Y1B C37 C38 SING N N 41 
Y1B C13 H44 SING N N 42 
Y1B C13 H45 SING N N 43 
Y1B C17 H49 SING N N 44 
Y1B C17 H48 SING N N 45 
Y1B C18 H50 SING N N 46 
Y1B C18 H51 SING N N 47 
Y1B C20 H52 SING N N 48 
Y1B C21 H53 SING N N 49 
Y1B C27 H54 SING N N 50 
Y1B C4  H39 SING N N 51 
Y1B C5  H40 SING N N 52 
Y1B C7  H41 SING N N 53 
Y1B O10 H42 SING N N 54 
Y1B C12 H43 SING N N 55 
Y1B C14 H46 SING N N 56 
Y1B C14 H47 SING N N 57 
Y1B C29 H56 SING N N 58 
Y1B C29 H55 SING N N 59 
Y1B C34 H57 SING N N 60 
Y1B C34 H59 SING N N 61 
Y1B C34 H58 SING N N 62 
Y1B C37 H60 SING N N 63 
Y1B C37 H61 SING N N 64 
Y1B C38 H63 SING N N 65 
Y1B C38 H62 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y1B SMILES           ACDLabs              12.01 "O=C(O)c1ccc(SC2CCN(CC2)C(=O)CCc2ccc(cc2Cn2nc(C)nn2)C(F)(F)F)c(F)c1"                                                                                                                        
Y1B InChI            InChI                1.06  "InChI=1S/C25H25F4N5O3S/c1-15-30-32-34(31-15)14-18-12-19(25(27,28)29)5-2-16(18)4-7-23(35)33-10-8-20(9-11-33)38-22-6-3-17(24(36)37)13-21(22)26/h2-3,5-6,12-13,20H,4,7-11,14H2,1H3,(H,36,37)" 
Y1B InChIKey         InChI                1.06  WEBFHJQYMDFMGS-UHFFFAOYSA-N                                                                                                                                                                 
Y1B SMILES_CANONICAL CACTVS               3.385 "Cc1nnn(Cc2cc(ccc2CCC(=O)N3CCC(CC3)Sc4ccc(cc4F)C(O)=O)C(F)(F)F)n1"                                                                                                                          
Y1B SMILES           CACTVS               3.385 "Cc1nnn(Cc2cc(ccc2CCC(=O)N3CCC(CC3)Sc4ccc(cc4F)C(O)=O)C(F)(F)F)n1"                                                                                                                          
Y1B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nnn(n1)Cc2cc(ccc2CCC(=O)N3CCC(CC3)Sc4ccc(cc4F)C(=O)O)C(F)(F)F"                                                                                                                          
Y1B SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1nnn(n1)Cc2cc(ccc2CCC(=O)N3CCC(CC3)Sc4ccc(cc4F)C(=O)O)C(F)(F)F"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y1B "SYSTEMATIC NAME" ACDLabs              12.01 "3-fluoro-4-{[1-(3-{2-[(5-methyl-2H-tetrazol-2-yl)methyl]-4-(trifluoromethyl)phenyl}propanoyl)piperidin-4-yl]sulfanyl}benzoic acid"        
Y1B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-fluoranyl-4-[1-[3-[2-[(5-methyl-1,2,3,4-tetrazol-2-yl)methyl]-4-(trifluoromethyl)phenyl]propanoyl]piperidin-4-yl]sulfanyl-benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y1B "Create component" 2023-06-09 RCSB 
Y1B "Initial release"  2024-12-18 RCSB 
# 
