data_Y0B
# 
_chem_comp.id                                    Y0B 
_chem_comp.name                                  "2-methoxy-6-{[(1-propyl-1H-benzimidazol-2-yl)amino]methyl}phenol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H21 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-04-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        311.378 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y0B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8T0N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y0B C1   C1  C 0 1 Y N N N N N 41.564 -15.424 16.202 -4.386 2.172  0.239  C1   Y0B 1  
Y0B C10  C2  C 0 1 N N N N N N 37.244 -17.604 15.405 -1.946 -1.999 -0.660 C10  Y0B 2  
Y0B C11  C3  C 0 1 N N N N N N 36.486 -16.524 14.657 -2.044 -2.889 0.581  C11  Y0B 3  
Y0B C12  C4  C 0 1 N N N N N N 35.114 -16.270 15.313 -1.732 -4.336 0.196  C12  Y0B 4  
Y0B C14  C5  C 0 1 N N N N N N 40.325 -20.088 13.148 0.879  1.212  0.707  C14  Y0B 5  
Y0B C15  C6  C 0 1 Y N N N N N 40.905 -19.320 11.930 2.305  0.729  0.770  C15  Y0B 6  
Y0B C16  C7  C 0 1 Y N N N N N 40.245 -19.368 10.678 2.855  0.357  1.983  C16  Y0B 7  
Y0B C17  C8  C 0 1 Y N N N N N 40.765 -18.705 9.572  4.161  -0.093 2.043  C17  Y0B 8  
Y0B C18  C9  C 0 1 Y N N N N N 41.955 -17.981 9.686  4.922  -0.173 0.892  C18  Y0B 9  
Y0B C19  C10 C 0 1 Y N N N N N 42.623 -17.935 10.927 4.376  0.198  -0.326 C19  Y0B 10 
Y0B C2   C11 C 0 1 Y N N N N N 41.099 -14.365 16.986 -5.647 1.719  -0.078 C2   Y0B 11 
Y0B C20  C12 C 0 1 Y N N N N N 42.096 -18.605 12.026 3.062  0.650  -0.388 C20  Y0B 12 
Y0B C23  C13 C 0 1 N N N N N N 43.930 -16.059 10.295 6.464  -0.355 -1.322 C23  Y0B 13 
Y0B C3   C14 C 0 1 Y N N N N N 39.730 -14.259 17.270 -5.840 0.412  -0.498 C3   Y0B 14 
Y0B C4   C15 C 0 1 Y N N N N N 38.833 -15.217 16.775 -4.771 -0.453 -0.605 C4   Y0B 15 
Y0B C5   C16 C 0 1 Y N N N N N 39.309 -16.293 15.976 -3.494 -0.014 -0.290 C5   Y0B 16 
Y0B C6   C17 C 0 1 Y N N N N N 40.648 -16.402 15.688 -3.292 1.311  0.131  C6   Y0B 17 
Y0B C8   C18 C 0 1 Y N N N N N 39.622 -18.093 14.715 -1.345 0.327  0.122  C8   Y0B 18 
Y0B N13  N1  N 0 1 N N N N N N 39.311 -19.317 13.929 0.012  0.120  0.257  N13  Y0B 19 
Y0B N7   N2  N 0 1 Y N N N N N 40.812 -17.539 14.903 -1.961 1.457  0.367  N7   Y0B 20 
Y0B N9   N3  N 0 1 Y N N N N N 38.694 -17.343 15.356 -2.245 -0.613 -0.291 N9   Y0B 21 
Y0B O21  O1  O 0 1 N N N N N N 42.798 -18.530 13.223 2.520  1.010  -1.582 O21  Y0B 22 
Y0B O22  O2  O 0 1 N N N N N N 43.839 -17.218 11.116 5.123  0.119  -1.460 O22  Y0B 23 
Y0B H11  H1  H 0 1 N N N N N N 42.618 -15.507 15.982 -4.243 3.192  0.566  H11  Y0B 24 
Y0B H101 H2  H 0 0 N N N N N N 36.914 -17.618 16.454 -0.937 -2.056 -1.069 H101 Y0B 25 
Y0B H102 H3  H 0 0 N N N N N N 37.036 -18.580 14.942 -2.662 -2.338 -1.408 H102 Y0B 26 
Y0B H111 H4  H 0 0 N N N N N N 36.335 -16.844 13.615 -1.328 -2.549 1.329  H111 Y0B 27 
Y0B H112 H5  H 0 0 N N N N N N 37.072 -15.593 14.673 -3.052 -2.831 0.991  H112 Y0B 28 
Y0B H121 H6  H 0 0 N N N N N N 34.581 -15.485 14.757 -2.448 -4.676 -0.552 H121 Y0B 29 
Y0B H123 H7  H 0 0 N N N N N N 34.522 -17.197 15.296 -0.723 -4.394 -0.214 H123 Y0B 30 
Y0B H122 H8  H 0 0 N N N N N N 35.260 -15.947 16.354 -1.801 -4.970 1.080  H122 Y0B 31 
Y0B H141 H9  H 0 0 N N N N N N 39.850 -21.010 12.781 0.563  1.543  1.697  H141 Y0B 32 
Y0B H142 H10 H 0 0 N N N N N N 41.156 -20.346 13.821 0.808  2.044  0.006  H142 Y0B 33 
Y0B H161 H11 H 0 0 N N N N N N 39.326 -19.927 10.581 2.264  0.419  2.884  H161 Y0B 34 
Y0B H171 H12 H 0 0 N N N N N N 40.249 -18.750 8.624  4.588  -0.382 2.992  H171 Y0B 35 
Y0B H181 H13 H 0 0 N N N N N N 42.360 -17.461 8.830  5.942  -0.524 0.942  H181 Y0B 36 
Y0B H21  H14 H 0 1 N N N N N N 41.791 -13.631 17.372 -6.492 2.387  0.002  H21  Y0B 37 
Y0B H232 H15 H 0 0 N N N N N N 44.886 -15.549 10.484 6.452  -1.363 -0.908 H232 Y0B 38 
Y0B H233 H16 H 0 0 N N N N N N 43.875 -16.354 9.237  6.947  -0.368 -2.299 H233 Y0B 39 
Y0B H231 H17 H 0 0 N N N N N N 43.099 -15.378 10.529 7.016  0.306  -0.653 H231 Y0B 40 
Y0B H31  H18 H 0 1 N N N N N N 39.366 -13.439 17.871 -6.834 0.069  -0.744 H31  Y0B 41 
Y0B H41  H19 H 0 1 N N N N N N 37.780 -15.137 17.001 -4.928 -1.470 -0.933 H41  Y0B 42 
Y0B H131 H20 H 0 0 N N N N N N 38.610 -19.045 13.269 0.392  -0.749 0.055  H131 Y0B 43 
Y0B H211 H21 H 0 0 N N N N N N 42.339 -19.025 13.891 2.639  1.944  -1.802 H211 Y0B 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y0B C17 C18  DOUB Y N 1  
Y0B C17 C16  SING Y N 2  
Y0B C18 C19  SING Y N 3  
Y0B C23 O22  SING N N 4  
Y0B C16 C15  DOUB Y N 5  
Y0B C19 O22  SING N N 6  
Y0B C19 C20  DOUB Y N 7  
Y0B C15 C20  SING Y N 8  
Y0B C15 C14  SING N N 9  
Y0B C20 O21  SING N N 10 
Y0B C14 N13  SING N N 11 
Y0B N13 C8   SING N N 12 
Y0B C11 C12  SING N N 13 
Y0B C11 C10  SING N N 14 
Y0B C8  N7   DOUB Y N 15 
Y0B C8  N9   SING Y N 16 
Y0B N7  C6   SING Y N 17 
Y0B N9  C10  SING N N 18 
Y0B N9  C5   SING Y N 19 
Y0B C6  C5   DOUB Y N 20 
Y0B C6  C1   SING Y N 21 
Y0B C5  C4   SING Y N 22 
Y0B C1  C2   DOUB Y N 23 
Y0B C4  C3   DOUB Y N 24 
Y0B C2  C3   SING Y N 25 
Y0B C1  H11  SING N N 26 
Y0B C10 H101 SING N N 27 
Y0B C10 H102 SING N N 28 
Y0B C11 H111 SING N N 29 
Y0B C11 H112 SING N N 30 
Y0B C12 H121 SING N N 31 
Y0B C12 H123 SING N N 32 
Y0B C12 H122 SING N N 33 
Y0B C14 H141 SING N N 34 
Y0B C14 H142 SING N N 35 
Y0B C16 H161 SING N N 36 
Y0B C17 H171 SING N N 37 
Y0B C18 H181 SING N N 38 
Y0B C2  H21  SING N N 39 
Y0B C23 H232 SING N N 40 
Y0B C23 H233 SING N N 41 
Y0B C23 H231 SING N N 42 
Y0B C3  H31  SING N N 43 
Y0B C4  H41  SING N N 44 
Y0B N13 H131 SING N N 45 
Y0B O21 H211 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y0B SMILES           ACDLabs              12.01 "COc1cccc(CNc2nc3ccccc3n2CCC)c1O"                                                                                               
Y0B InChI            InChI                1.06  "InChI=1S/C18H21N3O2/c1-3-11-21-15-9-5-4-8-14(15)20-18(21)19-12-13-7-6-10-16(23-2)17(13)22/h4-10,22H,3,11-12H2,1-2H3,(H,19,20)" 
Y0B InChIKey         InChI                1.06  PIPSFOMKWXEBPD-UHFFFAOYSA-N                                                                                                     
Y0B SMILES_CANONICAL CACTVS               3.385 "CCCn1c(NCc2cccc(OC)c2O)nc3ccccc13"                                                                                             
Y0B SMILES           CACTVS               3.385 "CCCn1c(NCc2cccc(OC)c2O)nc3ccccc13"                                                                                             
Y0B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCn1c2ccccc2nc1NCc3cccc(c3O)OC"                                                                                               
Y0B SMILES           "OpenEye OEToolkits" 2.0.7 "CCCn1c2ccccc2nc1NCc3cccc(c3O)OC"                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y0B "SYSTEMATIC NAME" ACDLabs              12.01 "2-methoxy-6-{[(1-propyl-1H-benzimidazol-2-yl)amino]methyl}phenol" 
Y0B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-methoxy-6-[[(1-propylbenzimidazol-2-yl)amino]methyl]phenol"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y0B "Create component" 2023-06-09 RCSB 
Y0B "Initial release"  2024-05-01 RCSB 
# 
