data_X5B
# 
_chem_comp.id                                    X5B 
_chem_comp.name                                  "(2R,3R,4R,5S)-1-{2-[4-(2-{[(5M)-3-chloro-5-(pyridazin-3-yl)phenyl]amino}ethyl)phenyl]ethyl}-2-(hydroxymethyl)piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H31 Cl N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-27 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        499.002 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X5B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ECW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X5B N1  N1  N  0 1 N N N -36.069 -30.212 -68.961 -6.343  0.039  0.097  N1  X5B 1  
X5B N3  N2  N  0 1 Y N N -46.275 -27.858 -70.770 9.964   2.280  -0.638 N3  X5B 2  
X5B C4  C1  C  0 1 N N N -34.279 -28.621 -68.560 -7.023  2.242  0.919  C4  X5B 3  
X5B C5  C2  C  0 1 N N N -36.866 -29.558 -68.331 -4.989  0.577  -0.085 C5  X5B 4  
X5B C6  C3  C  0 1 N N N -37.125 -30.193 -66.944 -3.961  -0.509 0.237  C6  X5B 5  
X5B C7  C4  C  0 1 Y N N -38.524 -29.797 -66.360 -2.571  0.043  0.051  C7  X5B 6  
X5B C8  C5  C  0 1 Y N N -38.612 -29.215 -65.091 -1.920  0.648  1.110  C8  X5B 7  
X5B C10 C6  C  0 1 Y N N -41.029 -29.092 -65.320 -0.021  1.056  -0.290 C10 X5B 8  
X5B C13 C7  C  0 1 Y N N -45.267 -26.357 -65.406 4.860   0.249  -0.098 C13 X5B 9  
X5B C15 C8  C  0 1 Y N N -46.472 -26.086 -67.490 7.245   -0.051 -0.021 C15 X5B 10 
X5B C17 C9  C  0 1 Y N N -47.376 -25.561 -69.813 9.724   -0.345 -0.044 C17 X5B 11 
X5B C20 C10 C  0 1 Y N N -47.335 -25.208 -66.876 7.061   -1.370 0.387  C20 X5B 12 
X5B C21 C11 C  0 1 Y N N -47.172 -24.899 -65.526 5.784   -1.874 0.545  C21 X5B 13 
X5B C22 C12 C  0 1 Y N N -46.130 -25.481 -64.794 4.685   -1.068 0.309  C22 X5B 14 
X5B C24 C13 C  0 1 Y N N -39.690 -30.028 -67.109 -1.945  -0.060 -1.177 C24 X5B 15 
X5B C26 C14 C  0 1 N N S -35.444 -32.568 -69.652 -7.960  -1.694 -0.525 C26 X5B 16 
X5B C1  C15 C  0 1 N N R -34.160 -32.412 -69.005 -9.052  -0.628 -0.650 C1  X5B 17 
X5B O1  O1  O  0 1 N N N -33.158 -33.263 -69.717 -10.316 -1.196 -0.305 O1  X5B 18 
X5B C2  C16 C  0 1 N N R -33.708 -31.018 -69.045 -8.734  0.531  0.298  C2  X5B 19 
X5B N2  N3  N  0 1 N N N -44.170 -26.969 -64.633 3.747   1.061  -0.335 N2  X5B 20 
X5B O2  O2  O  0 1 N N N -32.467 -30.911 -68.334 -9.719  1.556  0.146  O2  X5B 21 
X5B C3  C17 C  0 1 N N R -34.747 -30.073 -68.389 -7.353  1.097  -0.039 C3  X5B 22 
X5B O3  O3  O  0 1 N N N -34.476 -28.248 -69.893 -7.100  1.773  2.267  O3  X5B 23 
X5B N4  N4  N  0 1 Y N N -46.139 -27.524 -69.475 8.794   1.774  -0.483 N4  X5B 24 
X5B O4  O4  O  0 1 N N N -35.899 -33.923 -69.464 -8.219  -2.753 -1.447 O4  X5B 25 
X5B C9  C18 C  0 1 Y N N -39.861 -28.861 -64.569 -0.645  1.155  0.939  C9  X5B 26 
X5B C11 C19 C  0 1 N N N -42.401 -28.704 -64.745 1.368   1.609  -0.477 C11 X5B 27 
X5B C12 C20 C  0 1 N N N -42.916 -27.353 -65.305 2.397   0.523  -0.154 C12 X5B 28 
X5B C14 C21 C  0 1 Y N N -45.430 -26.668 -66.760 6.139   0.760  -0.264 C14 X5B 29 
X5B C16 C22 C  0 1 Y N N -46.655 -26.426 -68.984 8.615   0.491  -0.191 C16 X5B 30 
X5B C18 C23 C  0 1 Y N N -47.516 -25.921 -71.180 10.983  0.211  -0.213 C18 X5B 31 
X5B C19 C24 C  0 1 Y N N -46.928 -27.115 -71.620 11.064  1.562  -0.518 C19 X5B 32 
X5B C23 C25 C  0 1 Y N N -40.942 -29.673 -66.585 -0.670  0.447  -1.348 C23 X5B 33 
X5B C25 C26 C  0 1 N N N -36.525 -31.595 -69.097 -6.601  -1.064 -0.838 C25 X5B 34 
X5B CL1 CL1 CL 0 0 N N N -48.290 -23.764 -64.734 5.558   -3.518 1.054  CL1 X5B 35 
X5B H2  H2  H  0 1 N N N -33.212 -28.542 -68.306 -6.015  2.605  0.718  H2  X5B 36 
X5B H3  H3  H  0 1 N N N -34.862 -27.962 -67.900 -7.736  3.054  0.776  H3  X5B 37 
X5B H4  H4  H  0 1 N N N -36.469 -28.541 -68.194 -4.862  0.903  -1.117 H4  X5B 38 
X5B H5  H5  H  0 1 N N N -37.813 -29.510 -68.888 -4.842  1.425  0.584  H5  X5B 39 
X5B H6  H6  H  0 1 N N N -37.080 -31.288 -67.042 -4.087  -0.835 1.270  H6  X5B 40 
X5B H7  H7  H  0 1 N N N -36.343 -29.855 -66.249 -4.107  -1.357 -0.432 H7  X5B 41 
X5B H8  H8  H  0 1 N N N -37.716 -29.039 -64.514 -2.408  0.725  2.070  H8  X5B 42 
X5B H9  H9  H  0 1 N N N -47.811 -24.651 -69.427 9.605   -1.392 0.194  H9  X5B 43 
X5B H10 H10 H  0 1 N N N -48.139 -24.758 -67.440 7.917   -2.001 0.576  H10 X5B 44 
X5B H11 H11 H  0 1 N N N -46.005 -25.241 -63.748 3.688   -1.463 0.442  H11 X5B 45 
X5B H12 H12 H  0 1 N N N -39.622 -30.479 -68.088 -2.451  -0.537 -2.003 H12 X5B 46 
X5B H13 H13 H  0 1 N N N -35.333 -32.369 -70.728 -7.952  -2.089 0.491  H13 X5B 47 
X5B H14 H14 H  0 1 N N N -34.231 -32.743 -67.958 -9.086  -0.260 -1.676 H14 X5B 48 
X5B H15 H15 H  0 1 N N N -32.309 -33.169 -69.301 -10.579 -1.941 -0.864 H15 X5B 49 
X5B H16 H16 H  0 1 N N N -33.569 -30.708 -70.091 -8.739  0.172  1.327  H16 X5B 50 
X5B H17 H17 H  0 1 N N N -43.924 -26.317 -63.916 3.869   1.980  -0.620 H17 X5B 51 
X5B H18 H18 H  0 1 N N N -32.166 -30.010 -68.355 -10.621 1.267  0.341  H18 X5B 52 
X5B H19 H19 H  0 1 N N N -34.786 -30.300 -67.313 -7.353  1.469  -1.064 H19 X5B 53 
X5B H20 H20 H  0 1 N N N -34.191 -27.350 -70.017 -6.902  2.448  2.930  H20 X5B 54 
X5B H21 H21 H  0 1 N N N -35.246 -34.526 -69.800 -7.564  -3.464 -1.424 H21 X5B 55 
X5B H22 H22 H  0 1 N N N -39.929 -28.410 -63.590 -0.137  1.628  1.766  H22 X5B 56 
X5B H23 H23 H  0 1 N N N -43.126 -29.491 -64.999 1.495   1.934  -1.509 H23 X5B 57 
X5B H24 H24 H  0 1 N N N -42.316 -28.624 -63.651 1.514   2.458  0.192  H24 X5B 58 
X5B H25 H25 H  0 1 N N N -42.158 -26.575 -65.132 2.251   -0.325 -0.822 H25 X5B 59 
X5B H26 H26 H  0 1 N N N -43.098 -27.453 -66.385 2.270   0.198  0.879  H26 X5B 60 
X5B H27 H27 H  0 1 N N N -44.752 -27.357 -67.242 6.276   1.783  -0.581 H27 X5B 61 
X5B H28 H28 H  0 1 N N N -48.063 -25.289 -71.864 11.875  -0.390 -0.111 H28 X5B 62 
X5B H29 H29 H  0 1 N N N -47.015 -27.417 -72.653 12.030  2.026  -0.656 H29 X5B 63 
X5B H30 H30 H  0 1 N N N -41.838 -29.850 -67.161 -0.181  0.366  -2.307 H30 X5B 64 
X5B H31 H31 H  0 1 N N N -37.387 -31.609 -69.781 -6.604  -0.682 -1.859 H31 X5B 65 
X5B H32 H32 H  0 1 N N N -36.838 -31.955 -68.106 -5.819  -1.817 -0.735 H32 X5B 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X5B C19 C18 DOUB Y N 1  
X5B C19 N3  SING Y N 2  
X5B C18 C17 SING Y N 3  
X5B N3  N4  DOUB Y N 4  
X5B O3  C4  SING N N 5  
X5B C17 C16 DOUB Y N 6  
X5B O1  C1  SING N N 7  
X5B C26 O4  SING N N 8  
X5B C26 C25 SING N N 9  
X5B C26 C1  SING N N 10 
X5B N4  C16 SING Y N 11 
X5B C25 N1  SING N N 12 
X5B C2  C1  SING N N 13 
X5B C2  C3  SING N N 14 
X5B C2  O2  SING N N 15 
X5B C16 C15 SING N N 16 
X5B N1  C3  SING N N 17 
X5B N1  C5  SING N N 18 
X5B C4  C3  SING N N 19 
X5B C5  C6  SING N N 20 
X5B C15 C20 DOUB Y N 21 
X5B C15 C14 SING Y N 22 
X5B C24 C23 DOUB Y N 23 
X5B C24 C7  SING Y N 24 
X5B C6  C7  SING N N 25 
X5B C20 C21 SING Y N 26 
X5B C14 C13 DOUB Y N 27 
X5B C23 C10 SING Y N 28 
X5B C7  C8  DOUB Y N 29 
X5B C21 C22 DOUB Y N 30 
X5B C21 CL1 SING N N 31 
X5B C13 C22 SING Y N 32 
X5B C13 N2  SING N N 33 
X5B C10 C11 SING N N 34 
X5B C10 C9  DOUB Y N 35 
X5B C12 C11 SING N N 36 
X5B C12 N2  SING N N 37 
X5B C8  C9  SING Y N 38 
X5B C4  H2  SING N N 39 
X5B C4  H3  SING N N 40 
X5B C5  H4  SING N N 41 
X5B C5  H5  SING N N 42 
X5B C6  H6  SING N N 43 
X5B C6  H7  SING N N 44 
X5B C8  H8  SING N N 45 
X5B C17 H9  SING N N 46 
X5B C20 H10 SING N N 47 
X5B C22 H11 SING N N 48 
X5B C24 H12 SING N N 49 
X5B C26 H13 SING N N 50 
X5B C1  H14 SING N N 51 
X5B O1  H15 SING N N 52 
X5B C2  H16 SING N N 53 
X5B N2  H17 SING N N 54 
X5B O2  H18 SING N N 55 
X5B C3  H19 SING N N 56 
X5B O3  H20 SING N N 57 
X5B O4  H21 SING N N 58 
X5B C9  H22 SING N N 59 
X5B C11 H23 SING N N 60 
X5B C11 H24 SING N N 61 
X5B C12 H25 SING N N 62 
X5B C12 H26 SING N N 63 
X5B C14 H27 SING N N 64 
X5B C18 H28 SING N N 65 
X5B C19 H29 SING N N 66 
X5B C23 H30 SING N N 67 
X5B C25 H31 SING N N 68 
X5B C25 H32 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X5B SMILES           ACDLabs              12.01 "Clc1cc(cc(c1)NCCc1ccc(CCN2CC(O)C(O)C(O)C2CO)cc1)c1cccnn1"                                                                                                                                                 
X5B InChI            InChI                1.06  "InChI=1S/C26H31ClN4O4/c27-20-12-19(22-2-1-9-29-30-22)13-21(14-20)28-10-7-17-3-5-18(6-4-17)8-11-31-15-24(33)26(35)25(34)23(31)16-32/h1-6,9,12-14,23-26,28,32-35H,7-8,10-11,15-16H2/t23-,24+,25-,26-/m1/s1" 
X5B InChIKey         InChI                1.06  OCKWGRBGNLPCDQ-XDZVQPMWSA-N                                                                                                                                                                                
X5B SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCc2ccc(CCNc3cc(Cl)cc(c3)c4cccnn4)cc2"                                                                                                                              
X5B SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCc2ccc(CCNc3cc(Cl)cc(c3)c4cccnn4)cc2"                                                                                                                                     
X5B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(nnc1)c2cc(cc(c2)Cl)NCCc3ccc(cc3)CCN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O"                                                                                                                             
X5B SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(nnc1)c2cc(cc(c2)Cl)NCCc3ccc(cc3)CCN4CC(C(C(C4CO)O)O)O"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X5B "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-1-{2-[4-(2-{[(5M)-3-chloro-5-(pyridazin-3-yl)phenyl]amino}ethyl)phenyl]ethyl}-2-(hydroxymethyl)piperidine-3,4,5-triol"          
X5B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[2-[4-[2-[(3-chloranyl-5-pyridazin-3-yl-phenyl)amino]ethyl]phenyl]ethyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X5B "Create component" 2022-10-27 RCSB 
X5B "Initial release"  2023-02-22 RCSB 
# 
