data_VWB
# 
_chem_comp.id                                    VWB 
_chem_comp.name                                  "5-{2-[3-oxo-3-(pyrrolidin-1-yl)propoxy]phenoxy}naphthalene-2-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H22 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-19 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.443 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VWB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U6O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VWB O3  O1  O 0 1 N N N N N N 47.765 -14.031 21.683 -1.801 1.639  -0.891 O3  VWB 1  
VWB C24 C1  C 0 1 Y N N N N N 48.151 -12.238 26.082 -4.182 -2.183 0.873  C24 VWB 2  
VWB C23 C2  C 0 1 N N N N N N 49.438 -13.506 27.845 -5.093 -3.870 -0.632 C23 VWB 3  
VWB C21 C3  C 0 1 Y N N N N N 49.159 -14.335 25.507 -3.882 -1.927 -1.518 C21 VWB 4  
VWB O1  O2  O 0 1 N N N N N N 43.999 -18.220 19.759 4.880  0.780  0.202  O1  VWB 5  
VWB C22 C4  C 0 1 Y N N N N N 48.896 -13.348 26.432 -4.379 -2.647 -0.417 C22 VWB 6  
VWB C20 C5  C 0 1 Y N N N N N 48.683 -14.218 24.218 -3.202 -0.765 -1.340 C20 VWB 7  
VWB C19 C6  C 0 1 Y N N N N N 47.941 -13.112 23.860 -2.997 -0.262 -0.044 C19 VWB 8  
VWB C3  C7  C 0 1 N N N N N N 46.105 -16.881 23.639 5.181  -3.766 0.375  C3  VWB 9  
VWB O2  O3  O 0 1 N N N N N N 45.620 -14.323 20.045 0.902  1.362  -0.441 O2  VWB 10 
VWB C1  C8  C 0 1 N N N N N N 44.189 -17.271 20.435 4.254  -0.234 -0.023 C1  VWB 11 
VWB C4  C9  C 0 1 N N N N N N 45.820 -18.384 23.692 6.580  -3.156 0.094  C4  VWB 12 
VWB C8  C10 C 0 1 Y N N N N N 46.779 -13.738 19.538 0.328  2.594  -0.406 C8  VWB 13 
VWB C6  C11 C 0 1 N N N N N N 43.843 -15.884 19.913 2.771  -0.163 -0.279 C6  VWB 14 
VWB C5  C12 C 0 1 N N N N N N 45.129 -18.687 22.363 6.321  -1.638 0.189  C5  VWB 15 
VWB C2  C13 C 0 1 N N N N N N 45.043 -16.355 22.680 4.249  -2.730 -0.301 C2  VWB 16 
VWB C7  C14 C 0 1 N N N N N N 45.071 -15.302 19.222 2.309  1.294  -0.198 C7  VWB 17 
VWB C9  C15 C 0 1 Y N N N N N 46.841 -13.310 18.229 1.103  3.714  -0.149 C9  VWB 18 
VWB C12 C16 C 0 1 Y N N N N N 49.028 -13.006 19.906 -1.617 3.992  -0.597 C12 VWB 19 
VWB C11 C17 C 0 1 Y N N N N N 49.096 -12.577 18.596 -0.840 5.104  -0.335 C11 VWB 20 
VWB C10 C18 C 0 1 Y N N N N N 48.003 -12.730 17.760 0.518  4.966  -0.114 C10 VWB 21 
VWB C13 C19 C 0 1 Y N N N N N 47.862 -13.580 20.372 -1.038 2.734  -0.633 C13 VWB 22 
VWB C14 C20 C 0 1 Y N N N N N 47.470 -13.000 22.571 -2.294 0.943  0.165  C14 VWB 23 
VWB C15 C21 C 0 1 Y N N N N N 46.724 -11.901 22.201 -2.111 1.407  1.448  C15 VWB 24 
VWB C16 C22 C 0 1 Y N N N N N 46.459 -10.911 23.124 -2.612 0.702  2.540  C16 VWB 25 
VWB C17 C23 C 0 1 Y N N N N N 46.930 -11.017 24.419 -3.269 -0.478 2.371  C17 VWB 26 
VWB C18 C24 C 0 1 Y N N N N N 47.674 -12.123 24.791 -3.487 -0.981 1.075  C18 VWB 27 
VWB N1  N1  N 0 1 N N N N N N 44.759 -17.429 21.758 4.885  -1.425 -0.043 N1  VWB 28 
VWB N2  N2  N 0 1 N N N N N N 49.845 -13.634 28.889 -5.659 -4.840 -0.802 N2  VWB 29 
VWB H1  H1  H 0 1 N N N N N N 47.944 -11.468 26.811 -4.565 -2.739 1.716  H1  VWB 30 
VWB H2  H2  H 0 1 N N N N N N 49.738 -15.201 25.792 -4.043 -2.303 -2.518 H2  VWB 31 
VWB H3  H3  H 0 1 N N N N N N 48.891 -14.990 23.492 -2.827 -0.223 -2.195 H3  VWB 32 
VWB H4  H4  H 0 1 N N N N N N 47.116 -16.685 23.253 5.081  -4.745 -0.093 H4  VWB 33 
VWB H5  H5  H 0 1 N N N N N N 45.998 -16.425 24.634 4.989  -3.825 1.446  H5  VWB 34 
VWB H6  H6  H 0 1 N N N N N N 45.160 -18.625 24.538 7.298  -3.473 0.850  H6  VWB 35 
VWB H7  H7  H 0 1 N N N N N N 46.756 -18.955 23.783 6.927  -3.430 -0.903 H7  VWB 36 
VWB H8  H8  H 0 1 N N N N N N 43.548 -15.236 20.751 2.554  -0.558 -1.271 H8  VWB 37 
VWB H9  H9  H 0 1 N N N N N N 43.013 -15.955 19.195 2.244  -0.753 0.471  H9  VWB 38 
VWB H10 H10 H 0 1 N N N N N N 44.230 -19.296 22.540 6.594  -1.276 1.180  H10 VWB 39 
VWB H11 H11 H 0 1 N N N N N N 45.817 -19.233 21.700 6.903  -1.115 -0.570 H11 VWB 40 
VWB H12 H12 H 0 1 N N N N N N 45.422 -15.477 22.136 4.188  -2.917 -1.373 H12 VWB 41 
VWB H13 H13 H 0 1 N N N N N N 44.134 -16.078 23.234 3.256  -2.764 0.146  H13 VWB 42 
VWB H14 H14 H 0 1 N N N N N N 45.810 -16.098 19.048 2.836  1.884  -0.948 H14 VWB 43 
VWB H15 H15 H 0 1 N N N N N N 44.779 -14.856 18.260 2.526  1.690  0.794  H15 VWB 44 
VWB H16 H16 H 0 1 N N N N N N 45.989 -13.427 17.576 2.164  3.608  0.024  H16 VWB 45 
VWB H17 H17 H 0 1 N N N N N N 49.879 -12.894 20.561 -2.677 4.104  -0.773 H17 VWB 46 
VWB H18 H18 H 0 1 N N N N N N 50.002 -12.122 18.223 -1.293 6.084  -0.307 H18 VWB 47 
VWB H19 H19 H 0 1 N N N N N N 48.060 -12.394 16.735 1.123  5.838  0.087  H19 VWB 48 
VWB H20 H20 H 0 1 N N N N N N 46.349 -11.816 21.192 -1.573 2.329  1.610  H20 VWB 49 
VWB H21 H21 H 0 1 N N N N N N 45.880 -10.047 22.833 -2.456 1.085  3.537  H21 VWB 50 
VWB H22 H22 H 0 1 N N N N N N 46.718 -10.240 25.138 -3.651 -1.012 3.229  H22 VWB 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VWB C10 C9  DOUB Y N 1  
VWB C10 C11 SING Y N 2  
VWB C9  C8  SING Y N 3  
VWB C11 C12 DOUB Y N 4  
VWB C7  C6  SING N N 5  
VWB C7  O2  SING N N 6  
VWB C8  O2  SING N N 7  
VWB C8  C13 DOUB Y N 8  
VWB O1  C1  DOUB N N 9  
VWB C12 C13 SING Y N 10 
VWB C6  C1  SING N N 11 
VWB C13 O3  SING N N 12 
VWB C1  N1  SING N N 13 
VWB O3  C14 SING N N 14 
VWB N1  C5  SING N N 15 
VWB N1  C2  SING N N 16 
VWB C15 C14 DOUB Y N 17 
VWB C15 C16 SING Y N 18 
VWB C5  C4  SING N N 19 
VWB C14 C19 SING Y N 20 
VWB C2  C3  SING N N 21 
VWB C16 C17 DOUB Y N 22 
VWB C3  C4  SING N N 23 
VWB C19 C20 DOUB Y N 24 
VWB C19 C18 SING Y N 25 
VWB C20 C21 SING Y N 26 
VWB C17 C18 SING Y N 27 
VWB C18 C24 DOUB Y N 28 
VWB C21 C22 DOUB Y N 29 
VWB C24 C22 SING Y N 30 
VWB C22 C23 SING N N 31 
VWB C23 N2  TRIP N N 32 
VWB C24 H1  SING N N 33 
VWB C21 H2  SING N N 34 
VWB C20 H3  SING N N 35 
VWB C3  H4  SING N N 36 
VWB C3  H5  SING N N 37 
VWB C4  H6  SING N N 38 
VWB C4  H7  SING N N 39 
VWB C6  H8  SING N N 40 
VWB C6  H9  SING N N 41 
VWB C5  H10 SING N N 42 
VWB C5  H11 SING N N 43 
VWB C2  H12 SING N N 44 
VWB C2  H13 SING N N 45 
VWB C7  H14 SING N N 46 
VWB C7  H15 SING N N 47 
VWB C9  H16 SING N N 48 
VWB C12 H17 SING N N 49 
VWB C11 H18 SING N N 50 
VWB C10 H19 SING N N 51 
VWB C15 H20 SING N N 52 
VWB C16 H21 SING N N 53 
VWB C17 H22 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VWB SMILES           ACDLabs              12.01 "O=C(CCOc1ccccc1Oc1cccc2cc(C#N)ccc21)N1CCCC1"                                                                                              
VWB InChI            InChI                1.06  "InChI=1S/C24H22N2O3/c25-17-18-10-11-20-19(16-18)6-5-9-21(20)29-23-8-2-1-7-22(23)28-15-12-24(27)26-13-3-4-14-26/h1-2,5-11,16H,3-4,12-15H2" 
VWB InChIKey         InChI                1.06  UTKNCYCOFRHJAD-UHFFFAOYSA-N                                                                                                                
VWB SMILES_CANONICAL CACTVS               3.385 "O=C(CCOc1ccccc1Oc2cccc3cc(ccc23)C#N)N4CCCC4"                                                                                              
VWB SMILES           CACTVS               3.385 "O=C(CCOc1ccccc1Oc2cccc3cc(ccc23)C#N)N4CCCC4"                                                                                              
VWB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)N2CCCC2)Oc3cccc4c3ccc(c4)C#N"                                                                                          
VWB SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)N2CCCC2)Oc3cccc4c3ccc(c4)C#N"                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VWB "SYSTEMATIC NAME" ACDLabs              12.01 "5-{2-[3-oxo-3-(pyrrolidin-1-yl)propoxy]phenoxy}naphthalene-2-carbonitrile"          
VWB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[2-(3-oxidanylidene-3-pyrrolidin-1-yl-propoxy)phenoxy]naphthalene-2-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VWB "Create component" 2023-09-19 RCSB 
VWB "Initial release"  2023-11-08 RCSB 
# 
